Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change
Rapid climate change jeopardizes tree populations by shifting current climate zones. To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of p...
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Veröffentlicht in: | Molecular ecology 2010-09, Vol.19 (17), p.3806-3823 |
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description | Rapid climate change jeopardizes tree populations by shifting current climate zones. To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of populations might influence this species' ability to survive climate change. First, to understand how genetic lineages shape spatial genetic patterns, we examine historical patterns of colonization. Second, we examine the correlation between multivariate nuclear genetic variation and climatic variation. Third, to illustrate how geographic genetic variation could interact with regional patterns of 21st Century climate change, we produce region-specific bioclimatic distributions of valley oak using Maximum Entropy (MAXENT) models based on downscaled historical (1971-2000) and future (2070-2100) climate grids. Future climatologies are based on a moderate-high (A2) carbon emission scenario and two different global climate models. Chloroplast markers indicate historical range-wide connectivity via colonization, especially in the north. Multivariate nuclear genotypes show a strong association with climate variation that provides opportunity for local adaptation to the conditions within their climatic envelope. Comparison of regional current and projected patterns of climate suitability indicates that valley oaks grow in distinctly different climate conditions in different parts of their range. Our models predict widely different regional outcomes from local displacement of a few kilometres to hundreds of kilometres. We conclude that the relative importance of migration, adaptation, and tolerance are likely to vary widely for populations among regions, and that late 21st Century conditions could lead to regional extinctions. |
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To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of populations might influence this species' ability to survive climate change. First, to understand how genetic lineages shape spatial genetic patterns, we examine historical patterns of colonization. Second, we examine the correlation between multivariate nuclear genetic variation and climatic variation. Third, to illustrate how geographic genetic variation could interact with regional patterns of 21st Century climate change, we produce region-specific bioclimatic distributions of valley oak using Maximum Entropy (MAXENT) models based on downscaled historical (1971-2000) and future (2070-2100) climate grids. Future climatologies are based on a moderate-high (A2) carbon emission scenario and two different global climate models. Chloroplast markers indicate historical range-wide connectivity via colonization, especially in the north. Multivariate nuclear genotypes show a strong association with climate variation that provides opportunity for local adaptation to the conditions within their climatic envelope. Comparison of regional current and projected patterns of climate suitability indicates that valley oaks grow in distinctly different climate conditions in different parts of their range. Our models predict widely different regional outcomes from local displacement of a few kilometres to hundreds of kilometres. We conclude that the relative importance of migration, adaptation, and tolerance are likely to vary widely for populations among regions, and that late 21st Century conditions could lead to regional extinctions.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/j.1365-294X.2010.04726.x</identifier><identifier>PMID: 20723054</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>Biogeography ; California ; chloroplast and nuclear microsatellite ; Climate Change ; climate envelope ; DNA, Chloroplast - genetics ; DNA, Plant - genetics ; Ecology - methods ; environmental gradients ; Genetic Variation ; Genetics, Population ; Genotype ; Geography ; Landscape ecology ; landscape genetics ; Microsatellite Repeats ; Models, Biological ; Population genetics ; Quercus - genetics ; Quercus lobata ; Trees</subject><ispartof>Molecular ecology, 2010-09, Vol.19 (17), p.3806-3823</ispartof><rights>2010 Blackwell Publishing Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4896-8997309fc5b5a597e3a9eb6554dc9d2328dad4a95e24c1b999d2c4e6a769f7e03</citedby><cites>FETCH-LOGICAL-c4896-8997309fc5b5a597e3a9eb6554dc9d2328dad4a95e24c1b999d2c4e6a769f7e03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-294X.2010.04726.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-294X.2010.04726.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20723054$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sork, Victoria L</creatorcontrib><creatorcontrib>Davis, Frank W</creatorcontrib><creatorcontrib>Westfall, Robert</creatorcontrib><creatorcontrib>Flint, Alan</creatorcontrib><creatorcontrib>Ikegami, Makihiko</creatorcontrib><creatorcontrib>Wang, Hongfang</creatorcontrib><creatorcontrib>Grivet, Delphine</creatorcontrib><title>Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Rapid climate change jeopardizes tree populations by shifting current climate zones. To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of populations might influence this species' ability to survive climate change. First, to understand how genetic lineages shape spatial genetic patterns, we examine historical patterns of colonization. Second, we examine the correlation between multivariate nuclear genetic variation and climatic variation. Third, to illustrate how geographic genetic variation could interact with regional patterns of 21st Century climate change, we produce region-specific bioclimatic distributions of valley oak using Maximum Entropy (MAXENT) models based on downscaled historical (1971-2000) and future (2070-2100) climate grids. Future climatologies are based on a moderate-high (A2) carbon emission scenario and two different global climate models. Chloroplast markers indicate historical range-wide connectivity via colonization, especially in the north. Multivariate nuclear genotypes show a strong association with climate variation that provides opportunity for local adaptation to the conditions within their climatic envelope. Comparison of regional current and projected patterns of climate suitability indicates that valley oaks grow in distinctly different climate conditions in different parts of their range. Our models predict widely different regional outcomes from local displacement of a few kilometres to hundreds of kilometres. We conclude that the relative importance of migration, adaptation, and tolerance are likely to vary widely for populations among regions, and that late 21st Century conditions could lead to regional extinctions.</description><subject>Biogeography</subject><subject>California</subject><subject>chloroplast and nuclear microsatellite</subject><subject>Climate Change</subject><subject>climate envelope</subject><subject>DNA, Chloroplast - genetics</subject><subject>DNA, Plant - genetics</subject><subject>Ecology - methods</subject><subject>environmental gradients</subject><subject>Genetic Variation</subject><subject>Genetics, Population</subject><subject>Genotype</subject><subject>Geography</subject><subject>Landscape ecology</subject><subject>landscape genetics</subject><subject>Microsatellite Repeats</subject><subject>Models, Biological</subject><subject>Population genetics</subject><subject>Quercus - genetics</subject><subject>Quercus lobata</subject><subject>Trees</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1uEzEURkcIREPhFcBiAywm-HdmvOgCRU0KaosQVGVn3XjuJE4n42JP2vQ1eAuegxfDQ0oWbMAbW9fn-xb3ZBlhdMzSebsaM1GonGv5dcxpmlJZ8mK8fZCN9h8PsxHVBc8ZrcRB9iTGFaVMcKUeZwecllxQJUfZ9xl2SNb-BtfY9QS6mizSpHeWQIzeOuid78it65ck4CK9oSW2dWvokSwC1C7FInEdmUDrGh86B-QG2hbviIcr8vrTBoPdRNL6OfRAzn_-wDcD3i-RNGCR-GbfZ5fQLfBp9qiBNuKz-_swu5gef5mc5KcfZ-8n705zKytd5JXWpaC6sWquQOkSBWicF0rJ2uqaC17VUEvQCrm0bK51GlqJBZSFbkqk4jB7teu9Dv7bBmNv1i5abFvo0G-iKZViMu2M_5uUmnJWyIF8-Re58puQdjZAFRO6qGSCqh1kg48xYGOuQ1pAuDOMmsGvWZlBoxk0msGv-e3XbFP0-X3_Zr7Geh_8IzQBRzvg1iUF_11szo4nwyvl813exR63-zyEK1OUolTm8nxmppcnZ6WSH8w08S92fAPewCK4aC4-p2ZBWVVxIZn4Bd1szWw</recordid><startdate>201009</startdate><enddate>201009</enddate><creator>Sork, Victoria L</creator><creator>Davis, Frank W</creator><creator>Westfall, Robert</creator><creator>Flint, Alan</creator><creator>Ikegami, Makihiko</creator><creator>Wang, Hongfang</creator><creator>Grivet, Delphine</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7ST</scope><scope>7U6</scope></search><sort><creationdate>201009</creationdate><title>Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change</title><author>Sork, Victoria L ; Davis, Frank W ; Westfall, Robert ; Flint, Alan ; Ikegami, Makihiko ; Wang, Hongfang ; Grivet, Delphine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4896-8997309fc5b5a597e3a9eb6554dc9d2328dad4a95e24c1b999d2c4e6a769f7e03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Biogeography</topic><topic>California</topic><topic>chloroplast and nuclear microsatellite</topic><topic>Climate Change</topic><topic>climate envelope</topic><topic>DNA, Chloroplast - genetics</topic><topic>DNA, Plant - genetics</topic><topic>Ecology - methods</topic><topic>environmental gradients</topic><topic>Genetic Variation</topic><topic>Genetics, Population</topic><topic>Genotype</topic><topic>Geography</topic><topic>Landscape ecology</topic><topic>landscape genetics</topic><topic>Microsatellite Repeats</topic><topic>Models, Biological</topic><topic>Population genetics</topic><topic>Quercus - genetics</topic><topic>Quercus lobata</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sork, Victoria L</creatorcontrib><creatorcontrib>Davis, Frank W</creatorcontrib><creatorcontrib>Westfall, Robert</creatorcontrib><creatorcontrib>Flint, Alan</creatorcontrib><creatorcontrib>Ikegami, Makihiko</creatorcontrib><creatorcontrib>Wang, Hongfang</creatorcontrib><creatorcontrib>Grivet, Delphine</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Environment Abstracts</collection><collection>Sustainability Science Abstracts</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sork, Victoria L</au><au>Davis, Frank W</au><au>Westfall, Robert</au><au>Flint, Alan</au><au>Ikegami, Makihiko</au><au>Wang, Hongfang</au><au>Grivet, Delphine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2010-09</date><risdate>2010</risdate><volume>19</volume><issue>17</issue><spage>3806</spage><epage>3823</epage><pages>3806-3823</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Rapid climate change jeopardizes tree populations by shifting current climate zones. To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of populations might influence this species' ability to survive climate change. First, to understand how genetic lineages shape spatial genetic patterns, we examine historical patterns of colonization. Second, we examine the correlation between multivariate nuclear genetic variation and climatic variation. Third, to illustrate how geographic genetic variation could interact with regional patterns of 21st Century climate change, we produce region-specific bioclimatic distributions of valley oak using Maximum Entropy (MAXENT) models based on downscaled historical (1971-2000) and future (2070-2100) climate grids. Future climatologies are based on a moderate-high (A2) carbon emission scenario and two different global climate models. Chloroplast markers indicate historical range-wide connectivity via colonization, especially in the north. Multivariate nuclear genotypes show a strong association with climate variation that provides opportunity for local adaptation to the conditions within their climatic envelope. Comparison of regional current and projected patterns of climate suitability indicates that valley oaks grow in distinctly different climate conditions in different parts of their range. Our models predict widely different regional outcomes from local displacement of a few kilometres to hundreds of kilometres. We conclude that the relative importance of migration, adaptation, and tolerance are likely to vary widely for populations among regions, and that late 21st Century conditions could lead to regional extinctions.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>20723054</pmid><doi>10.1111/j.1365-294X.2010.04726.x</doi><tpages>18</tpages></addata></record> |
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subjects | Biogeography California chloroplast and nuclear microsatellite Climate Change climate envelope DNA, Chloroplast - genetics DNA, Plant - genetics Ecology - methods environmental gradients Genetic Variation Genetics, Population Genotype Geography Landscape ecology landscape genetics Microsatellite Repeats Models, Biological Population genetics Quercus - genetics Quercus lobata Trees |
title | Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change |
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