highly sensitive and specific multiplex PCR assay for simultaneous detection of Vibrio cholerae, Vibrio parahaemolyticus and Vibrio vulnificus
To develop an effective multiplex PCR for simultaneous and rapid detection of Vibrio cholerae, Vibrio vulnificus and Vibrio parahaemolyticus, the three most important Vibrio species that can cause devastating health hazards among human. Species-specific PCR primers were designed based on toxR gene f...
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creator | Neogi, S.B Chowdhury, N Asakura, M Hinenoya, A Haldar, S Saidi, S.M Kogure, K Lara, R.J Yamasaki, S |
description | To develop an effective multiplex PCR for simultaneous and rapid detection of Vibrio cholerae, Vibrio vulnificus and Vibrio parahaemolyticus, the three most important Vibrio species that can cause devastating health hazards among human. Species-specific PCR primers were designed based on toxR gene for V. cholerae and V. parahaemolyticus, and vvhA gene for V. vulnificus. The multiplex PCR was validated with 488 Vibrio strains including 322 V. cholerae, 12 V. vulnificus, and 82 V. parahaemolyticus, 20 other Vibrio species and 17 other bacterial species associated with human diseases. It could detect the three target bacteria without any ambiguity even among closely related species. It showed good efficiency in detection of co-existing target species in the same sample. The detection limit of all the target species was ten cells per PCR tube. Specificity and sensitivity of the multiplex PCR is 100% each and sufficient for simultaneous detection of these potentially pathogenic Vibrio species in clinical and environmental samples. This simple, rapid and cost-effective method can be applicable in a prediction system to prevent disease outbreak by these Vibrio species and can be considered as an effective tool for both epidemiologist and ecologist. |
doi_str_mv | 10.1111/j.1472-765x.2010.02895.x |
format | Article |
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Species-specific PCR primers were designed based on toxR gene for V. cholerae and V. parahaemolyticus, and vvhA gene for V. vulnificus. The multiplex PCR was validated with 488 Vibrio strains including 322 V. cholerae, 12 V. vulnificus, and 82 V. parahaemolyticus, 20 other Vibrio species and 17 other bacterial species associated with human diseases. It could detect the three target bacteria without any ambiguity even among closely related species. It showed good efficiency in detection of co-existing target species in the same sample. The detection limit of all the target species was ten cells per PCR tube. Specificity and sensitivity of the multiplex PCR is 100% each and sufficient for simultaneous detection of these potentially pathogenic Vibrio species in clinical and environmental samples. This simple, rapid and cost-effective method can be applicable in a prediction system to prevent disease outbreak by these Vibrio species and can be considered as an effective tool for both epidemiologist and ecologist.</description><identifier>ISSN: 0266-8254</identifier><identifier>EISSN: 1472-765X</identifier><identifier>DOI: 10.1111/j.1472-765x.2010.02895.x</identifier><identifier>PMID: 20666989</identifier><identifier>CODEN: LAMIE7</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>Bacterial Proteins - genetics ; Bacteriological Techniques - methods ; Biological and medical sciences ; DNA-Binding Proteins - genetics ; Fundamental and applied biological sciences. Psychology ; Humans ; Microbiology ; multiplex PCR ; Polymerase Chain Reaction - methods ; Sensitivity and Specificity ; toxR ; Transcription Factors - genetics ; V. cholerae ; V. parahaemolyticus ; V. vulnificus ; V. cholerae ; V. parahaemolyticus ; V. vulnificus ; Vibrio cholerae ; Vibrio cholerae - genetics ; Vibrio cholerae - isolation & purification ; Vibrio Infections - diagnosis ; Vibrio parahaemolyticus ; Vibrio parahaemolyticus - genetics ; Vibrio parahaemolyticus - isolation & purification ; Vibrio vulnificus ; Vibrio vulnificus - genetics ; Vibrio vulnificus - isolation & purification ; vvhA</subject><ispartof>Letters in applied microbiology, 2010-09, Vol.51 (3), p.293-300</ispartof><rights>2010 The Authors. 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Species-specific PCR primers were designed based on toxR gene for V. cholerae and V. parahaemolyticus, and vvhA gene for V. vulnificus. The multiplex PCR was validated with 488 Vibrio strains including 322 V. cholerae, 12 V. vulnificus, and 82 V. parahaemolyticus, 20 other Vibrio species and 17 other bacterial species associated with human diseases. It could detect the three target bacteria without any ambiguity even among closely related species. It showed good efficiency in detection of co-existing target species in the same sample. The detection limit of all the target species was ten cells per PCR tube. Specificity and sensitivity of the multiplex PCR is 100% each and sufficient for simultaneous detection of these potentially pathogenic Vibrio species in clinical and environmental samples. This simple, rapid and cost-effective method can be applicable in a prediction system to prevent disease outbreak by these Vibrio species and can be considered as an effective tool for both epidemiologist and ecologist.</description><subject>Bacterial Proteins - genetics</subject><subject>Bacteriological Techniques - methods</subject><subject>Biological and medical sciences</subject><subject>DNA-Binding Proteins - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Humans</subject><subject>Microbiology</subject><subject>multiplex PCR</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Sensitivity and Specificity</subject><subject>toxR</subject><subject>Transcription Factors - genetics</subject><subject>V. cholerae</subject><subject>V. parahaemolyticus</subject><subject>V. vulnificus</subject><subject>V. cholerae</subject><subject>V. parahaemolyticus</subject><subject>V. vulnificus</subject><subject>Vibrio cholerae</subject><subject>Vibrio cholerae - genetics</subject><subject>Vibrio cholerae - isolation & purification</subject><subject>Vibrio Infections - diagnosis</subject><subject>Vibrio parahaemolyticus</subject><subject>Vibrio parahaemolyticus - genetics</subject><subject>Vibrio parahaemolyticus - isolation & purification</subject><subject>Vibrio vulnificus</subject><subject>Vibrio vulnificus - genetics</subject><subject>Vibrio vulnificus - isolation & purification</subject><subject>vvhA</subject><issn>0266-8254</issn><issn>1472-765X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkcuO0zAUhiMEYsrAK4A3iA0pjuNLvGAxqrhJRSBgEDvr1D2eunIuEydD8xI8Mw5tYYk3ts7_nfPr-M8yUtBlkc6r_bLgiuVKisOS0VSlrNJiebiXLc7Cj_vZgjIp84oJfpE9inFPKa0Kph9mF4xKKXWlF9mvnb_ZhYlEbKIf_B0SaLYkdmi985bUYxh8F_BAPq--EIgRJuLankQ_K9BgO0ayxQHt4NuGtI5895vet8Tu2oA94MtzoYMedoB1G6bB29Q1-5y0uzE0s90YH2cPHISIT073ZXb99s231ft8_endh9XVOrdcFSKHtC7npSi2G0s1ogTUAoBvnKycFpoLyZA7ZxkIISRHJoGXJVNUW-2kKy-zF8e5Xd_ejhgHU_toMYTjSkYJXmnFKf0_mUCpSy0S-fREjpsat6brfQ39ZM6fnYDnJwCiheB6aKyP_7iS6kJSlrjXR-6nDzj91Qtq5vDN3swZmzljM4dv_oRvDmZ99XF-pf5nx34HrYGbPnlcf01kSYtKaaVU-RtaTa5O</recordid><startdate>201009</startdate><enddate>201009</enddate><creator>Neogi, S.B</creator><creator>Chowdhury, N</creator><creator>Asakura, M</creator><creator>Hinenoya, A</creator><creator>Haldar, S</creator><creator>Saidi, S.M</creator><creator>Kogure, K</creator><creator>Lara, R.J</creator><creator>Yamasaki, S</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H97</scope><scope>L.G</scope><scope>P64</scope></search><sort><creationdate>201009</creationdate><title>highly sensitive and specific multiplex PCR assay for simultaneous detection of Vibrio cholerae, Vibrio parahaemolyticus and Vibrio vulnificus</title><author>Neogi, S.B ; Chowdhury, N ; Asakura, M ; Hinenoya, A ; Haldar, S ; Saidi, S.M ; Kogure, K ; Lara, R.J ; Yamasaki, S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4715-a28944351dbc09ee6ae95aa4bf68f9594562e4ffc2a55564e26a4332709c9f6f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Bacterial Proteins - genetics</topic><topic>Bacteriological Techniques - methods</topic><topic>Biological and medical sciences</topic><topic>DNA-Binding Proteins - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Humans</topic><topic>Microbiology</topic><topic>multiplex PCR</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Sensitivity and Specificity</topic><topic>toxR</topic><topic>Transcription Factors - genetics</topic><topic>V. cholerae</topic><topic>V. parahaemolyticus</topic><topic>V. vulnificus</topic><topic>V. cholerae</topic><topic>V. parahaemolyticus</topic><topic>V. vulnificus</topic><topic>Vibrio cholerae</topic><topic>Vibrio cholerae - genetics</topic><topic>Vibrio cholerae - isolation & purification</topic><topic>Vibrio Infections - diagnosis</topic><topic>Vibrio parahaemolyticus</topic><topic>Vibrio parahaemolyticus - genetics</topic><topic>Vibrio parahaemolyticus - isolation & purification</topic><topic>Vibrio vulnificus</topic><topic>Vibrio vulnificus - genetics</topic><topic>Vibrio vulnificus - isolation & purification</topic><topic>vvhA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Neogi, S.B</creatorcontrib><creatorcontrib>Chowdhury, N</creatorcontrib><creatorcontrib>Asakura, M</creatorcontrib><creatorcontrib>Hinenoya, A</creatorcontrib><creatorcontrib>Haldar, S</creatorcontrib><creatorcontrib>Saidi, S.M</creatorcontrib><creatorcontrib>Kogure, K</creatorcontrib><creatorcontrib>Lara, R.J</creatorcontrib><creatorcontrib>Yamasaki, S</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Letters in applied microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Neogi, S.B</au><au>Chowdhury, N</au><au>Asakura, M</au><au>Hinenoya, A</au><au>Haldar, S</au><au>Saidi, S.M</au><au>Kogure, K</au><au>Lara, R.J</au><au>Yamasaki, S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>highly sensitive and specific multiplex PCR assay for simultaneous detection of Vibrio cholerae, Vibrio parahaemolyticus and Vibrio vulnificus</atitle><jtitle>Letters in applied microbiology</jtitle><addtitle>Lett Appl Microbiol</addtitle><date>2010-09</date><risdate>2010</risdate><volume>51</volume><issue>3</issue><spage>293</spage><epage>300</epage><pages>293-300</pages><issn>0266-8254</issn><eissn>1472-765X</eissn><coden>LAMIE7</coden><abstract>To develop an effective multiplex PCR for simultaneous and rapid detection of Vibrio cholerae, Vibrio vulnificus and Vibrio parahaemolyticus, the three most important Vibrio species that can cause devastating health hazards among human. Species-specific PCR primers were designed based on toxR gene for V. cholerae and V. parahaemolyticus, and vvhA gene for V. vulnificus. The multiplex PCR was validated with 488 Vibrio strains including 322 V. cholerae, 12 V. vulnificus, and 82 V. parahaemolyticus, 20 other Vibrio species and 17 other bacterial species associated with human diseases. It could detect the three target bacteria without any ambiguity even among closely related species. It showed good efficiency in detection of co-existing target species in the same sample. The detection limit of all the target species was ten cells per PCR tube. Specificity and sensitivity of the multiplex PCR is 100% each and sufficient for simultaneous detection of these potentially pathogenic Vibrio species in clinical and environmental samples. This simple, rapid and cost-effective method can be applicable in a prediction system to prevent disease outbreak by these Vibrio species and can be considered as an effective tool for both epidemiologist and ecologist.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>20666989</pmid><doi>10.1111/j.1472-765x.2010.02895.x</doi><tpages>8</tpages></addata></record> |
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source | Oxford University Press Journals All Titles (1996-Current); MEDLINE; Wiley Online Library Journals Frontfile Complete; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
subjects | Bacterial Proteins - genetics Bacteriological Techniques - methods Biological and medical sciences DNA-Binding Proteins - genetics Fundamental and applied biological sciences. Psychology Humans Microbiology multiplex PCR Polymerase Chain Reaction - methods Sensitivity and Specificity toxR Transcription Factors - genetics V. cholerae V. parahaemolyticus V. vulnificus V. cholerae V. parahaemolyticus V. vulnificus Vibrio cholerae Vibrio cholerae - genetics Vibrio cholerae - isolation & purification Vibrio Infections - diagnosis Vibrio parahaemolyticus Vibrio parahaemolyticus - genetics Vibrio parahaemolyticus - isolation & purification Vibrio vulnificus Vibrio vulnificus - genetics Vibrio vulnificus - isolation & purification vvhA |
title | highly sensitive and specific multiplex PCR assay for simultaneous detection of Vibrio cholerae, Vibrio parahaemolyticus and Vibrio vulnificus |
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