Gene Expression Analysis of Collembola in Cadmium Containing Soil
Increasing concern about pollution of our environment calls for advanced and rapid methods to estimate ecological toxicity. The use of gene expression microarrays in environmental studies can potentially meet this challenge. We present a novel method to examine soil toxicity. We exposed the collembo...
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Veröffentlicht in: | Environmental science & technology 2008-11, Vol.42 (21), p.8152-8157 |
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creator | Nota, Benjamin Timmermans, Martijn J.T.N Franken, Oscar Montagne-Wajer, Kora Mariën, Janine Boer, Muriel E. de Boer, Tjalf E. de Ylstra, Bauke Straalen, Nico M. van Roelofs, Dick |
description | Increasing concern about pollution of our environment calls for advanced and rapid methods to estimate ecological toxicity. The use of gene expression microarrays in environmental studies can potentially meet this challenge. We present a novel method to examine soil toxicity. We exposed the collembolan Folsomia candida to soil containing an ecologically relevant cadmium concentration, and found a cumulative total of 1586 differentially expressed transcripts across three exposure durations, including transcripts involved in stress response, detoxification, and hypoxia. Additional enrichment analysis of gene ontology (GO) terms revealed that antibiotic biosynthesis is important at all time points examined. Interestingly, genes involved in the “penicillin and cephalosporin biosynthesis pathway” have never been identified in animals before, but are expressed in F. candida’s tissue. The synthesis of antibiotics can possibly be a response to increased cadmium-induced susceptibility to invading pathogens, which might be caused by repression of genes involved in the immune-system (C-type lectins and Toll receptor). This study presents a first global view on the environmental stress response of an arthropod species exposed to contaminated soil, and provides a mechanistic basis for the development of a gene expression soil quality test. |
doi_str_mv | 10.1021/es801472r |
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The use of gene expression microarrays in environmental studies can potentially meet this challenge. We present a novel method to examine soil toxicity. We exposed the collembolan Folsomia candida to soil containing an ecologically relevant cadmium concentration, and found a cumulative total of 1586 differentially expressed transcripts across three exposure durations, including transcripts involved in stress response, detoxification, and hypoxia. Additional enrichment analysis of gene ontology (GO) terms revealed that antibiotic biosynthesis is important at all time points examined. Interestingly, genes involved in the “penicillin and cephalosporin biosynthesis pathway” have never been identified in animals before, but are expressed in F. candida’s tissue. The synthesis of antibiotics can possibly be a response to increased cadmium-induced susceptibility to invading pathogens, which might be caused by repression of genes involved in the immune-system (C-type lectins and Toll receptor). This study presents a first global view on the environmental stress response of an arthropod species exposed to contaminated soil, and provides a mechanistic basis for the development of a gene expression soil quality test.</description><identifier>ISSN: 0013-936X</identifier><identifier>EISSN: 1520-5851</identifier><identifier>DOI: 10.1021/es801472r</identifier><identifier>PMID: 19031917</identifier><identifier>CODEN: ESTHAG</identifier><language>eng</language><publisher>Washington, DC: American Chemical Society</publisher><subject>Animals ; Antibiotics ; Applied sciences ; Arthropoda ; Arthropods ; Arthropods - drug effects ; Arthropods - genetics ; Biosynthesis ; Cadmium ; Cadmium - toxicity ; Chemical synthesis ; Collembola ; Ecotoxicology and Human Environmental Health ; Exact sciences and technology ; Folsomia candida ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation - drug effects ; Heat-Shock Response - drug effects ; Hypoxia ; Immune System - drug effects ; Pollution ; Reproduction ; Soil ; Soil contamination ; Toxicity</subject><ispartof>Environmental science & technology, 2008-11, Vol.42 (21), p.8152-8157</ispartof><rights>Copyright © 2008 American Chemical Society</rights><rights>2009 INIST-CNRS</rights><rights>Copyright American Chemical Society Nov 1, 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a440t-ebc3356dc5a60161f5f706131f215bd3b15593452f66012e5c2f2ebd483fae273</citedby><cites>FETCH-LOGICAL-a440t-ebc3356dc5a60161f5f706131f215bd3b15593452f66012e5c2f2ebd483fae273</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/es801472r$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/es801472r$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20824690$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19031917$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nota, Benjamin</creatorcontrib><creatorcontrib>Timmermans, Martijn J.T.N</creatorcontrib><creatorcontrib>Franken, Oscar</creatorcontrib><creatorcontrib>Montagne-Wajer, Kora</creatorcontrib><creatorcontrib>Mariën, Janine</creatorcontrib><creatorcontrib>Boer, Muriel E. de</creatorcontrib><creatorcontrib>Boer, Tjalf E. de</creatorcontrib><creatorcontrib>Ylstra, Bauke</creatorcontrib><creatorcontrib>Straalen, Nico M. van</creatorcontrib><creatorcontrib>Roelofs, Dick</creatorcontrib><title>Gene Expression Analysis of Collembola in Cadmium Containing Soil</title><title>Environmental science & technology</title><addtitle>Environ. Sci. Technol</addtitle><description>Increasing concern about pollution of our environment calls for advanced and rapid methods to estimate ecological toxicity. The use of gene expression microarrays in environmental studies can potentially meet this challenge. We present a novel method to examine soil toxicity. We exposed the collembolan Folsomia candida to soil containing an ecologically relevant cadmium concentration, and found a cumulative total of 1586 differentially expressed transcripts across three exposure durations, including transcripts involved in stress response, detoxification, and hypoxia. Additional enrichment analysis of gene ontology (GO) terms revealed that antibiotic biosynthesis is important at all time points examined. Interestingly, genes involved in the “penicillin and cephalosporin biosynthesis pathway” have never been identified in animals before, but are expressed in F. candida’s tissue. The synthesis of antibiotics can possibly be a response to increased cadmium-induced susceptibility to invading pathogens, which might be caused by repression of genes involved in the immune-system (C-type lectins and Toll receptor). This study presents a first global view on the environmental stress response of an arthropod species exposed to contaminated soil, and provides a mechanistic basis for the development of a gene expression soil quality test.</description><subject>Animals</subject><subject>Antibiotics</subject><subject>Applied sciences</subject><subject>Arthropoda</subject><subject>Arthropods</subject><subject>Arthropods - drug effects</subject><subject>Arthropods - genetics</subject><subject>Biosynthesis</subject><subject>Cadmium</subject><subject>Cadmium - toxicity</subject><subject>Chemical synthesis</subject><subject>Collembola</subject><subject>Ecotoxicology and Human Environmental Health</subject><subject>Exact sciences and technology</subject><subject>Folsomia candida</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation - drug effects</subject><subject>Heat-Shock Response - drug effects</subject><subject>Hypoxia</subject><subject>Immune System - drug effects</subject><subject>Pollution</subject><subject>Reproduction</subject><subject>Soil</subject><subject>Soil contamination</subject><subject>Toxicity</subject><issn>0013-936X</issn><issn>1520-5851</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNplkE1rGzEQhkVoSVw3h_yBshRK6WFTjT7242hMEhcCbZqU5Ca0u1JRqpUcjReSf18FGxva08DMw8O8LyFnQM-BMvhqsKEgapaOyAwko6VsJLwhM0qBly2vHk7IO8RHSinjtDkmJ9BSDi3UM7K4MsEUF8_rZBBdDMUiaP-CDotoi2X03oxd9LpwoVjqYXTTmLdho11w4XdxG51_T95a7dGc7uac_Lq8uFuuyuvvV9-Wi-tSC0E3pel6zmU19FJXFCqw0ta0Ag6WgewG3oGULReS2SrfmZE9s8x0g2i41YbVfE4-b73rFJ8mgxs1OuyN9zqYOKGqpZACmiyZk4__kI9xSjkXqpwfMti-6r5soT5FxGSsWic36vSigKrXVtW-1cx-2AmnbjTDgdzVmIFPO0Bjr71NOvQO9xyjDRNVhuek3HION-Z5f9fpj6pqXkt19-NWccFXP28u79Xq4NU9HkL8_-BfksyXuQ</recordid><startdate>20081101</startdate><enddate>20081101</enddate><creator>Nota, Benjamin</creator><creator>Timmermans, Martijn J.T.N</creator><creator>Franken, Oscar</creator><creator>Montagne-Wajer, Kora</creator><creator>Mariën, Janine</creator><creator>Boer, Muriel E. de</creator><creator>Boer, Tjalf E. de</creator><creator>Ylstra, Bauke</creator><creator>Straalen, Nico M. van</creator><creator>Roelofs, Dick</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7ST</scope><scope>7T7</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>SOI</scope><scope>7SS</scope><scope>7TV</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>20081101</creationdate><title>Gene Expression Analysis of Collembola in Cadmium Containing Soil</title><author>Nota, Benjamin ; 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Interestingly, genes involved in the “penicillin and cephalosporin biosynthesis pathway” have never been identified in animals before, but are expressed in F. candida’s tissue. The synthesis of antibiotics can possibly be a response to increased cadmium-induced susceptibility to invading pathogens, which might be caused by repression of genes involved in the immune-system (C-type lectins and Toll receptor). This study presents a first global view on the environmental stress response of an arthropod species exposed to contaminated soil, and provides a mechanistic basis for the development of a gene expression soil quality test.</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>19031917</pmid><doi>10.1021/es801472r</doi><tpages>6</tpages></addata></record> |
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subjects | Animals Antibiotics Applied sciences Arthropoda Arthropods Arthropods - drug effects Arthropods - genetics Biosynthesis Cadmium Cadmium - toxicity Chemical synthesis Collembola Ecotoxicology and Human Environmental Health Exact sciences and technology Folsomia candida Gene expression Gene Expression Profiling Gene Expression Regulation - drug effects Heat-Shock Response - drug effects Hypoxia Immune System - drug effects Pollution Reproduction Soil Soil contamination Toxicity |
title | Gene Expression Analysis of Collembola in Cadmium Containing Soil |
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