Advanced imaging techniques for assessment of structure, composition and function in biofilm systems
Scientific imaging represents an important and accepted research tool for the analysis and understanding of complex natural systems. Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy...
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| Veröffentlicht in: | FEMS microbiology ecology 2010-04, Vol.72 (1), p.1-21 |
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| creator | Neu, Thomas R Manz, Bertram Volke, Frank Dynes, James J Hitchcock, Adam P Lawrence, John R |
| description | Scientific imaging represents an important and accepted research tool for the analysis and understanding of complex natural systems. Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy (LSM), magnetic resonance imaging (MRI) and scanning transmission X-ray microscopy (STXM). These new techniques allow in situ analysis of the structure, composition, processes and dynamics of microbial communities. The three techniques open up quantitative analytical imaging possibilities that were, until a few years ago, impossible. The microscopic techniques represent powerful tools for examination of mixed environmental microbial communities usually encountered in the form of aggregates and films. As a consequence, LSM, MRI and STXM are being used in order to study complex microbial biofilm systems. This mini review provides a short outline of the more recent applications with the intention to stimulate new research and imaging approaches in microbiology. |
| doi_str_mv | 10.1111/j.1574-6941.2010.00837.x |
| format | Article |
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Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy (LSM), magnetic resonance imaging (MRI) and scanning transmission X-ray microscopy (STXM). These new techniques allow in situ analysis of the structure, composition, processes and dynamics of microbial communities. The three techniques open up quantitative analytical imaging possibilities that were, until a few years ago, impossible. The microscopic techniques represent powerful tools for examination of mixed environmental microbial communities usually encountered in the form of aggregates and films. As a consequence, LSM, MRI and STXM are being used in order to study complex microbial biofilm systems. This mini review provides a short outline of the more recent applications with the intention to stimulate new research and imaging approaches in microbiology.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1111/j.1574-6941.2010.00837.x</identifier><identifier>PMID: 20180852</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>Animal, plant and microbial ecology ; Bacteria - chemistry ; Bacteria - ultrastructure ; Bacterial Physiological Phenomena ; biofilm ; Biofilms ; Biological and medical sciences ; Communities ; Composition ; Confocal microscopy ; Dynamic structural analysis ; Ecology ; Electron microscopy ; Fluorescent Antibody Technique ; Fundamental and applied biological sciences. Psychology ; image analysis ; imaging ; Imaging techniques ; laser scanning microscopy (LSM) ; Magnetic resonance imaging ; magnetic resonance imaging (MRI) ; Magnetic Resonance Imaging - methods ; Microbial activity ; Microbial ecology ; Microbiology ; Microorganisms ; Microscopy ; Microscopy - methods ; Microscopy, Confocal - methods ; Microscopy, Electron ; NMR ; Nuclear magnetic resonance ; Scanning microscopy ; scanning transmission X-ray microscopy (STXM) ; Structure-function relationships ; X ray microscopy ; X-Rays</subject><ispartof>FEMS microbiology ecology, 2010-04, Vol.72 (1), p.1-21</ispartof><rights>2010 Federation of European Microbiological Societies 2010</rights><rights>2010 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. 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Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy (LSM), magnetic resonance imaging (MRI) and scanning transmission X-ray microscopy (STXM). These new techniques allow in situ analysis of the structure, composition, processes and dynamics of microbial communities. The three techniques open up quantitative analytical imaging possibilities that were, until a few years ago, impossible. The microscopic techniques represent powerful tools for examination of mixed environmental microbial communities usually encountered in the form of aggregates and films. As a consequence, LSM, MRI and STXM are being used in order to study complex microbial biofilm systems. This mini review provides a short outline of the more recent applications with the intention to stimulate new research and imaging approaches in microbiology.</description><subject>Animal, plant and microbial ecology</subject><subject>Bacteria - chemistry</subject><subject>Bacteria - ultrastructure</subject><subject>Bacterial Physiological Phenomena</subject><subject>biofilm</subject><subject>Biofilms</subject><subject>Biological and medical sciences</subject><subject>Communities</subject><subject>Composition</subject><subject>Confocal microscopy</subject><subject>Dynamic structural analysis</subject><subject>Ecology</subject><subject>Electron microscopy</subject><subject>Fluorescent Antibody Technique</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>image analysis</subject><subject>imaging</subject><subject>Imaging techniques</subject><subject>laser scanning microscopy (LSM)</subject><subject>Magnetic resonance imaging</subject><subject>magnetic resonance imaging (MRI)</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Microbial activity</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Microscopy</subject><subject>Microscopy - methods</subject><subject>Microscopy, Confocal - methods</subject><subject>Microscopy, Electron</subject><subject>NMR</subject><subject>Nuclear magnetic resonance</subject><subject>Scanning microscopy</subject><subject>scanning transmission X-ray microscopy (STXM)</subject><subject>Structure-function relationships</subject><subject>X ray microscopy</subject><subject>X-Rays</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkVtrFDEYhgdR7Fr9CxoQ8cZZcz6AN6W0KlS80F6HbCZZs8wkazKj3X9vprNWEEVz8-XwvMn75W0agOAa1fF6t0ZM0JYritYY1l0IJRHrm3vN6u7gfrOCiMuWU8VPmkel7CBEjFD4sDmpGgklw6umO-u-mWhdB8JgtiFuwejslxi-Tq4AnzIwpbhSBhdHkDwoY57sOGX3Ctg07FMJY0gRmNgBP0V7uwgRbELyoR9AOZTRDeVx88Cbvrgnx3raXF9efD5_1159fPv-_OyqtUww0WIhmSG-M9JuHLbKMWy5gmSjmFXCUmG49Q47JImBHlvLJOPSUS-VIsQbctq8XO7d5zQ3MOohFOv63kSXpqIF5VgJLPC_SUIYVIrySj7_jdylKcfahsYEcoJpLZWSC2VzKiU7r_e5fmg-aAT1HJne6TkZPSej58j0bWT6pkqfHh-YNoPr7oQ_M6rAiyNgijW9zzWvUH5xmCqEsKzcm4X7Hnp3-G8D-vLiQ51UOVnkadr_Rdz-yf2zReVN0mabq7HrT5Ug1T3CgjPyA3YEygQ</recordid><startdate>201004</startdate><enddate>201004</enddate><creator>Neu, Thomas R</creator><creator>Manz, Bertram</creator><creator>Volke, Frank</creator><creator>Dynes, James J</creator><creator>Hitchcock, Adam P</creator><creator>Lawrence, John R</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Oxford University Press</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201004</creationdate><title>Advanced imaging techniques for assessment of structure, composition and function in biofilm systems</title><author>Neu, Thomas R ; Manz, Bertram ; Volke, Frank ; Dynes, James J ; Hitchcock, Adam P ; Lawrence, John R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5757-2785a3fda8cbe2c9e52c6903b95c97c47a6cfe2e183a0f2cc58568e4f89933fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Bacteria - chemistry</topic><topic>Bacteria - ultrastructure</topic><topic>Bacterial Physiological Phenomena</topic><topic>biofilm</topic><topic>Biofilms</topic><topic>Biological and medical sciences</topic><topic>Communities</topic><topic>Composition</topic><topic>Confocal microscopy</topic><topic>Dynamic structural analysis</topic><topic>Ecology</topic><topic>Electron microscopy</topic><topic>Fluorescent Antibody Technique</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>image analysis</topic><topic>imaging</topic><topic>Imaging techniques</topic><topic>laser scanning microscopy (LSM)</topic><topic>Magnetic resonance imaging</topic><topic>magnetic resonance imaging (MRI)</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Microbial activity</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Microscopy</topic><topic>Microscopy - methods</topic><topic>Microscopy, Confocal - methods</topic><topic>Microscopy, Electron</topic><topic>NMR</topic><topic>Nuclear magnetic resonance</topic><topic>Scanning microscopy</topic><topic>scanning transmission X-ray microscopy (STXM)</topic><topic>Structure-function relationships</topic><topic>X ray microscopy</topic><topic>X-Rays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Neu, Thomas R</creatorcontrib><creatorcontrib>Manz, Bertram</creatorcontrib><creatorcontrib>Volke, Frank</creatorcontrib><creatorcontrib>Dynes, James J</creatorcontrib><creatorcontrib>Hitchcock, Adam P</creatorcontrib><creatorcontrib>Lawrence, John R</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Neu, Thomas R</au><au>Manz, Bertram</au><au>Volke, Frank</au><au>Dynes, James J</au><au>Hitchcock, Adam P</au><au>Lawrence, John R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Advanced imaging techniques for assessment of structure, composition and function in biofilm systems</atitle><jtitle>FEMS microbiology ecology</jtitle><addtitle>FEMS Microbiol Ecol</addtitle><date>2010-04</date><risdate>2010</risdate><volume>72</volume><issue>1</issue><spage>1</spage><epage>21</epage><pages>1-21</pages><issn>0168-6496</issn><eissn>1574-6941</eissn><abstract>Scientific imaging represents an important and accepted research tool for the analysis and understanding of complex natural systems. 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| source | MEDLINE; Oxford Journals Open Access Collection; EZB-FREE-00999 freely available EZB journals; Wiley Online Library All Journals |
| subjects | Animal, plant and microbial ecology Bacteria - chemistry Bacteria - ultrastructure Bacterial Physiological Phenomena biofilm Biofilms Biological and medical sciences Communities Composition Confocal microscopy Dynamic structural analysis Ecology Electron microscopy Fluorescent Antibody Technique Fundamental and applied biological sciences. Psychology image analysis imaging Imaging techniques laser scanning microscopy (LSM) Magnetic resonance imaging magnetic resonance imaging (MRI) Magnetic Resonance Imaging - methods Microbial activity Microbial ecology Microbiology Microorganisms Microscopy Microscopy - methods Microscopy, Confocal - methods Microscopy, Electron NMR Nuclear magnetic resonance Scanning microscopy scanning transmission X-ray microscopy (STXM) Structure-function relationships X ray microscopy X-Rays |
| title | Advanced imaging techniques for assessment of structure, composition and function in biofilm systems |
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