emPAI Calc—for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry

emPAI Calc is an open-source web application for the estimation of protein abundance. It uses the correlation between the number of identified peptides and protein abundance in mass spectrometry-based proteomic experiments. The program is the first implementation of our previously reported emPAI alg...

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Veröffentlicht in:	Bioinformatics 2010-02, Vol.26 (4), p.576-577
Hauptverfasser:	Shinoda, Kosaku, Tomita, Masaru, Ishihama, Yasushi
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Biological and medical sciences Chromatography, Liquid - methods Databases, Protein Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Proteins - chemistry Proteomics - methods Sequence Analysis, Protein Software Tandem Mass Spectrometry - methods
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