unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa
Beak and feather disease virus (BFDV), the causative agent of psittacine beak and feather disease (PBFD) infects psittaciformes worldwide. We provide an annotated sequence record of three full-length unique genomes of BFDV isolates from budgerigars (Melopsittacus undulatus) from a breeding farm in S...
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| Veröffentlicht in: | Archives of virology 2010-03, Vol.155 (3), p.435-439 |
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| creator | Varsani, Arvind de Villiers, Gillian K Regnard, Guy L Bragg, Robert R Kondiah, Kulsum Hitzeroth, Inga I Rybicki, Edward P |
| description | Beak and feather disease virus (BFDV), the causative agent of psittacine beak and feather disease (PBFD) infects psittaciformes worldwide. We provide an annotated sequence record of three full-length unique genomes of BFDV isolates from budgerigars (Melopsittacus undulatus) from a breeding farm in South Africa. The isolates share >99% nucleotide sequence identity with each other and ~96% nucleotide sequence identity to two recent isolates (Melopsittacus undulatus) from Thailand but only between 91.6 and 86.6% identity with all other full-length BFDV sequences. Maximum-likelihood analysis and recombination analysis suggest that the South African budgerigar BFDV isolates are unique to budgerigars, are non-recombinant in origin, and represent a new genotype of BFDV. |
| doi_str_mv | 10.1007/s00705-010-0589-0 |
| format | Article |
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We provide an annotated sequence record of three full-length unique genomes of BFDV isolates from budgerigars (Melopsittacus undulatus) from a breeding farm in South Africa. The isolates share >99% nucleotide sequence identity with each other and ~96% nucleotide sequence identity to two recent isolates (Melopsittacus undulatus) from Thailand but only between 91.6 and 86.6% identity with all other full-length BFDV sequences. Maximum-likelihood analysis and recombination analysis suggest that the South African budgerigar BFDV isolates are unique to budgerigars, are non-recombinant in origin, and represent a new genotype of BFDV.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-010-0589-0</identifier><identifier>PMID: 20127375</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Animals ; Annotated Sequence Record ; Beak and feather disease virus ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Bird Diseases - virology ; Circoviridae Infections - veterinary ; Circoviridae Infections - virology ; Circovirus - classification ; Circovirus - genetics ; Circovirus - isolation & purification ; Cluster Analysis ; DNA, Viral - chemistry ; DNA, Viral - genetics ; Fundamental and applied biological sciences. Psychology ; Genome, Viral ; Genotype ; Infectious Diseases ; Medical Microbiology ; Melopsittacus - virology ; Melopsittacus undulatus ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; Psittaciformes ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; South Africa ; Virology</subject><ispartof>Archives of virology, 2010-03, Vol.155 (3), p.435-439</ispartof><rights>Springer-Verlag 2010</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c456t-f5bf4a8227ed0a8f27dd2e90f658e2179199bc2b5f1ffe72be818a545b19b4f83</citedby><cites>FETCH-LOGICAL-c456t-f5bf4a8227ed0a8f27dd2e90f658e2179199bc2b5f1ffe72be818a545b19b4f83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-010-0589-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-010-0589-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22508649$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20127375$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Varsani, Arvind</creatorcontrib><creatorcontrib>de Villiers, Gillian K</creatorcontrib><creatorcontrib>Regnard, Guy L</creatorcontrib><creatorcontrib>Bragg, Robert R</creatorcontrib><creatorcontrib>Kondiah, Kulsum</creatorcontrib><creatorcontrib>Hitzeroth, Inga I</creatorcontrib><creatorcontrib>Rybicki, Edward P</creatorcontrib><title>unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Beak and feather disease virus (BFDV), the causative agent of psittacine beak and feather disease (PBFD) infects psittaciformes worldwide. We provide an annotated sequence record of three full-length unique genomes of BFDV isolates from budgerigars (Melopsittacus undulatus) from a breeding farm in South Africa. The isolates share >99% nucleotide sequence identity with each other and ~96% nucleotide sequence identity to two recent isolates (Melopsittacus undulatus) from Thailand but only between 91.6 and 86.6% identity with all other full-length BFDV sequences. Maximum-likelihood analysis and recombination analysis suggest that the South African budgerigar BFDV isolates are unique to budgerigars, are non-recombinant in origin, and represent a new genotype of BFDV.</description><subject>Animals</subject><subject>Annotated Sequence Record</subject><subject>Beak and feather disease virus</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Bird Diseases - virology</subject><subject>Circoviridae Infections - veterinary</subject><subject>Circoviridae Infections - virology</subject><subject>Circovirus - classification</subject><subject>Circovirus - genetics</subject><subject>Circovirus - isolation & purification</subject><subject>Cluster Analysis</subject><subject>DNA, Viral - chemistry</subject><subject>DNA, Viral - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Genotype</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Melopsittacus - virology</subject><subject>Melopsittacus undulatus</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Psittaciformes</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>South Africa</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkUtv1TAQhS0EoreFH8AGLKQKWATGr9hZVhUvqYhF6dqaJPatS258sWMk_j2uckslFoiNLXm-MzPHh5BnDN4yAP0u1wNUAwwaUKZr4AHZMCl4Y3RnHpINCJCNacEckeOcbwDqg1CPyREHxrXQakOWMocfxdGQ44SLo9HT3uF3ivNIvcPl2iU6huwwO_ozpJLvyFpOcUf7Mm5dCltMmb7-4qa4z2FZcKhgmcdSyZLf0DDTy1iWa3rmUxjwCXnkccru6eE-IVcf3n87_9RcfP34-fzsohmkapfGq95LNJxrNwIaz_U4cteBb5VxnOmOdV0_8F555r3TvHeGGVRS9azrpTfihLxa--5TrCbzYnchD26acHaxZKul6rSU8B-kEK0WwFQlX_5F3sSS5mrDcsZF_XkuKsRWaEgx5-S83aeww_TLMrC30dk1Olujs7fRWaia54fGpd-58Y_iLqsKnB4AzANOPuE8hHzPcQWmlV3l-MrlWpprOvcb_mv6i1XkMVrcptr46rKOrp4NGK2l-A3qzLpg</recordid><startdate>20100301</startdate><enddate>20100301</enddate><creator>Varsani, Arvind</creator><creator>de Villiers, Gillian K</creator><creator>Regnard, Guy L</creator><creator>Bragg, Robert R</creator><creator>Kondiah, Kulsum</creator><creator>Hitzeroth, Inga I</creator><creator>Rybicki, Edward P</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20100301</creationdate><title>unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa</title><author>Varsani, Arvind ; de Villiers, Gillian K ; Regnard, Guy L ; Bragg, Robert R ; Kondiah, Kulsum ; Hitzeroth, Inga I ; Rybicki, Edward P</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c456t-f5bf4a8227ed0a8f27dd2e90f658e2179199bc2b5f1ffe72be818a545b19b4f83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Animals</topic><topic>Annotated Sequence Record</topic><topic>Beak and feather disease virus</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Bird Diseases - virology</topic><topic>Circoviridae Infections - veterinary</topic><topic>Circoviridae Infections - virology</topic><topic>Circovirus - classification</topic><topic>Circovirus - genetics</topic><topic>Circovirus - isolation & purification</topic><topic>Cluster Analysis</topic><topic>DNA, Viral - chemistry</topic><topic>DNA, Viral - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Viral</topic><topic>Genotype</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Melopsittacus - virology</topic><topic>Melopsittacus undulatus</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Psittaciformes</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>South Africa</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Varsani, Arvind</creatorcontrib><creatorcontrib>de Villiers, Gillian K</creatorcontrib><creatorcontrib>Regnard, Guy L</creatorcontrib><creatorcontrib>Bragg, Robert R</creatorcontrib><creatorcontrib>Kondiah, Kulsum</creatorcontrib><creatorcontrib>Hitzeroth, Inga I</creatorcontrib><creatorcontrib>Rybicki, Edward P</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Varsani, Arvind</au><au>de Villiers, Gillian K</au><au>Regnard, Guy L</au><au>Bragg, Robert R</au><au>Kondiah, Kulsum</au><au>Hitzeroth, Inga I</au><au>Rybicki, Edward P</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2010-03-01</date><risdate>2010</risdate><volume>155</volume><issue>3</issue><spage>435</spage><epage>439</epage><pages>435-439</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Beak and feather disease virus (BFDV), the causative agent of psittacine beak and feather disease (PBFD) infects psittaciformes worldwide. We provide an annotated sequence record of three full-length unique genomes of BFDV isolates from budgerigars (Melopsittacus undulatus) from a breeding farm in South Africa. The isolates share >99% nucleotide sequence identity with each other and ~96% nucleotide sequence identity to two recent isolates (Melopsittacus undulatus) from Thailand but only between 91.6 and 86.6% identity with all other full-length BFDV sequences. Maximum-likelihood analysis and recombination analysis suggest that the South African budgerigar BFDV isolates are unique to budgerigars, are non-recombinant in origin, and represent a new genotype of BFDV.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>20127375</pmid><doi>10.1007/s00705-010-0589-0</doi><tpages>5</tpages></addata></record> |
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| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2010-03, Vol.155 (3), p.435-439 |
| issn | 0304-8608 1432-8798 |
| language | eng |
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| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Animals Annotated Sequence Record Beak and feather disease virus Biological and medical sciences Biomedical and Life Sciences Biomedicine Bird Diseases - virology Circoviridae Infections - veterinary Circoviridae Infections - virology Circovirus - classification Circovirus - genetics Circovirus - isolation & purification Cluster Analysis DNA, Viral - chemistry DNA, Viral - genetics Fundamental and applied biological sciences. Psychology Genome, Viral Genotype Infectious Diseases Medical Microbiology Melopsittacus - virology Melopsittacus undulatus Microbiology Miscellaneous Molecular Sequence Data Phylogeny Psittaciformes Sequence Analysis, DNA Sequence Homology, Nucleic Acid South Africa Virology |
| title | unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa |
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