Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L
A transcription factor RCBF2 which interacts with C-repeat/DRE was isolated from Oryza sativa L. by a yeast one-hybrid method. Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids...
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| Veröffentlicht in: | Biotechnology letters 2007-01, Vol.29 (1), p.165-173 |
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| container_title | Biotechnology letters |
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| creator | Liu, Jin-Ge Zhang, Zhen Qin, Qiu-Lin Peng, Ri-He Xiong, Ai-Sheng Chen, Jian-Min Xu, Fang Zhu, Hong Yao, Quan-Hong |
| description | A transcription factor RCBF2 which interacts with C-repeat/DRE was isolated from Oryza sativa L. by a yeast one-hybrid method. Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids and a potential nuclear localization sequence. RCBF2 showed a high level of homology with other CBF family members only in AP2 domain. Phylogenetic analysis showed that RCBF2 might be different from other eight DRE-binding proteins on evolutionary relationship. The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots. |
| doi_str_mv | 10.1007/s10529-006-9214-4 |
| format | Article |
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Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids and a potential nuclear localization sequence. RCBF2 showed a high level of homology with other CBF family members only in AP2 domain. Phylogenetic analysis showed that RCBF2 might be different from other eight DRE-binding proteins on evolutionary relationship. The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots.</description><identifier>ISSN: 0141-5492</identifier><identifier>EISSN: 1573-6776</identifier><identifier>DOI: 10.1007/s10529-006-9214-4</identifier><identifier>PMID: 17136305</identifier><identifier>CODEN: BILED3</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Kluwer Academic Publishers</publisher><subject>Base Sequence ; Biological and medical sciences ; Biotechnology ; DNA, Complementary - genetics ; DNA, Complementary - isolation & purification ; DNA, Plant - genetics ; DNA, Plant - isolation & purification ; DNA-Binding Proteins - genetics ; ethylene ; Ethylene binding protein ; Fundamental and applied biological sciences. Psychology ; Molecular Sequence Data ; Oryza - genetics ; Oryza sativa ; Plant Proteins - genetics ; Promoter Regions, Genetic - genetics ; rice ; Transcription factor ; Yeast one-hybrid</subject><ispartof>Biotechnology letters, 2007-01, Vol.29 (1), p.165-173</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c416t-ffa2911f06502e131ce3571fff4e5c6d6097d09c24695b2e918811b94c7853fd3</citedby><cites>FETCH-LOGICAL-c416t-ffa2911f06502e131ce3571fff4e5c6d6097d09c24695b2e918811b94c7853fd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18420587$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17136305$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Jin-Ge</creatorcontrib><creatorcontrib>Zhang, Zhen</creatorcontrib><creatorcontrib>Qin, Qiu-Lin</creatorcontrib><creatorcontrib>Peng, Ri-He</creatorcontrib><creatorcontrib>Xiong, Ai-Sheng</creatorcontrib><creatorcontrib>Chen, Jian-Min</creatorcontrib><creatorcontrib>Xu, Fang</creatorcontrib><creatorcontrib>Zhu, Hong</creatorcontrib><creatorcontrib>Yao, Quan-Hong</creatorcontrib><title>Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L</title><title>Biotechnology letters</title><addtitle>Biotechnol Lett</addtitle><description>A transcription factor RCBF2 which interacts with C-repeat/DRE was isolated from Oryza sativa L. by a yeast one-hybrid method. Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids and a potential nuclear localization sequence. RCBF2 showed a high level of homology with other CBF family members only in AP2 domain. Phylogenetic analysis showed that RCBF2 might be different from other eight DRE-binding proteins on evolutionary relationship. The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots.</description><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>DNA, Complementary - genetics</subject><subject>DNA, Complementary - isolation & purification</subject><subject>DNA, Plant - genetics</subject><subject>DNA, Plant - isolation & purification</subject><subject>DNA-Binding Proteins - genetics</subject><subject>ethylene</subject><subject>Ethylene binding protein</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Molecular Sequence Data</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>Plant Proteins - genetics</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>rice</subject><subject>Transcription factor</subject><subject>Yeast one-hybrid</subject><issn>0141-5492</issn><issn>1573-6776</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0ctuEzEUBuARAtFQeAA24A03qaY-vo6XaUihUkSrQtcjx3PcDpp4gj2plL4Er4xLgrqDlRf-_mMf_VX1EthHYMwcZ2CKW8qYppaDpPJRNQFlBNXG6MfVhIEEqqTlB9WznH8wxqxh5ml1AAaEFkxNql9neejdiC1xsSX-xiXnR0zdnRu7IZIhEEf8p69TgtEPbRevCY432x4j0oR5PcTc3SLBHlcYR7Ls4h-zTsOIXSTv55fzk4sPx9MLTsftGv9eHJHL2ckpPyLFnKftnSO5vHfryOJ59SS4PuOL_XlYXZ3Ov8--0MX557PZdEG9BD3SEBy3AIFpxTiCAI9CGQghSFRet7ps2jLrudRWLTlaqGuApZXe1EqEVhxW73Zzy49-bjCPzarLHvveRRw2uTFSSMVKpsi3_5S6FroM_T_kjEuurCgQdtCnIeeEoVmnbuXStgHW3Bfb7IptSrHNfbGNLJlX--Gb5Qrbh8S-yQLe7IHL3vUhuei7_OBqyZmqTXGvdy64oXHXqZirb5yBYABgla3Fb0OIsq0</recordid><startdate>20070101</startdate><enddate>20070101</enddate><creator>Liu, Jin-Ge</creator><creator>Zhang, Zhen</creator><creator>Qin, Qiu-Lin</creator><creator>Peng, Ri-He</creator><creator>Xiong, Ai-Sheng</creator><creator>Chen, Jian-Min</creator><creator>Xu, Fang</creator><creator>Zhu, Hong</creator><creator>Yao, Quan-Hong</creator><general>Dordrecht : Kluwer Academic Publishers</general><general>Springer</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><scope>7TB</scope><scope>7U5</scope><scope>L7M</scope></search><sort><creationdate>20070101</creationdate><title>Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L</title><author>Liu, Jin-Ge ; Zhang, Zhen ; Qin, Qiu-Lin ; Peng, Ri-He ; Xiong, Ai-Sheng ; Chen, Jian-Min ; Xu, Fang ; Zhu, Hong ; Yao, Quan-Hong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c416t-ffa2911f06502e131ce3571fff4e5c6d6097d09c24695b2e918811b94c7853fd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>DNA, Complementary - genetics</topic><topic>DNA, Complementary - isolation & purification</topic><topic>DNA, Plant - genetics</topic><topic>DNA, Plant - isolation & purification</topic><topic>DNA-Binding Proteins - genetics</topic><topic>ethylene</topic><topic>Ethylene binding protein</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Molecular Sequence Data</topic><topic>Oryza - genetics</topic><topic>Oryza sativa</topic><topic>Plant Proteins - genetics</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>rice</topic><topic>Transcription factor</topic><topic>Yeast one-hybrid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Jin-Ge</creatorcontrib><creatorcontrib>Zhang, Zhen</creatorcontrib><creatorcontrib>Qin, Qiu-Lin</creatorcontrib><creatorcontrib>Peng, Ri-He</creatorcontrib><creatorcontrib>Xiong, Ai-Sheng</creatorcontrib><creatorcontrib>Chen, Jian-Min</creatorcontrib><creatorcontrib>Xu, Fang</creatorcontrib><creatorcontrib>Zhu, Hong</creatorcontrib><creatorcontrib>Yao, Quan-Hong</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Biotechnology letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Jin-Ge</au><au>Zhang, Zhen</au><au>Qin, Qiu-Lin</au><au>Peng, Ri-He</au><au>Xiong, Ai-Sheng</au><au>Chen, Jian-Min</au><au>Xu, Fang</au><au>Zhu, Hong</au><au>Yao, Quan-Hong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L</atitle><jtitle>Biotechnology letters</jtitle><addtitle>Biotechnol Lett</addtitle><date>2007-01-01</date><risdate>2007</risdate><volume>29</volume><issue>1</issue><spage>165</spage><epage>173</epage><pages>165-173</pages><issn>0141-5492</issn><eissn>1573-6776</eissn><coden>BILED3</coden><abstract>A transcription factor RCBF2 which interacts with C-repeat/DRE was isolated from Oryza sativa L. by a yeast one-hybrid method. Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids and a potential nuclear localization sequence. RCBF2 showed a high level of homology with other CBF family members only in AP2 domain. Phylogenetic analysis showed that RCBF2 might be different from other eight DRE-binding proteins on evolutionary relationship. The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots.</abstract><cop>Dordrecht</cop><pub>Dordrecht : Kluwer Academic Publishers</pub><pmid>17136305</pmid><doi>10.1007/s10529-006-9214-4</doi><tpages>9</tpages></addata></record> |
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| ispartof | Biotechnology letters, 2007-01, Vol.29 (1), p.165-173 |
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| subjects | Base Sequence Biological and medical sciences Biotechnology DNA, Complementary - genetics DNA, Complementary - isolation & purification DNA, Plant - genetics DNA, Plant - isolation & purification DNA-Binding Proteins - genetics ethylene Ethylene binding protein Fundamental and applied biological sciences. Psychology Molecular Sequence Data Oryza - genetics Oryza sativa Plant Proteins - genetics Promoter Regions, Genetic - genetics rice Transcription factor Yeast one-hybrid |
| title | Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L |
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