Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock
Sequence variation in the control region (D‐loop) of the mitochondrial DNA (mtDNA) was examined to assess the genetic distinctiveness of the shortjaw cisco (Coregonus zenithicus). Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments cont...
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| Veröffentlicht in: | Molecular ecology 1998-09, Vol.7 (9), p.1091-1096 |
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| container_title | Molecular ecology |
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| creator | REED, KENT M. DORSCHNER, MICHAEL O. TODD, THOMAS N. PHILLIPS, RUTH B. |
| description | Sequence variation in the control region (D‐loop) of the mitochondrial DNA (mtDNA) was examined to assess the genetic distinctiveness of the shortjaw cisco (Coregonus zenithicus). Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments containing the entire D‐loop were amplified by PCR from specimens of C. zenithicus and the related species C. artedi, C. hoyi, C. kiyi, and C. clupeaformis. DNA sequence analysis revealed high similarity within and among species and shared polymorphism for length variants. Based on this analysis, the shortjaw cisco is not genetically distinct from other cisco species. |
| doi_str_mv | 10.1046/j.1365-294x.1998.00419.x |
| format | Article |
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Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments containing the entire D‐loop were amplified by PCR from specimens of C. zenithicus and the related species C. artedi, C. hoyi, C. kiyi, and C. clupeaformis. DNA sequence analysis revealed high similarity within and among species and shared polymorphism for length variants. Based on this analysis, the shortjaw cisco is not genetically distinct from other cisco species.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1046/j.1365-294x.1998.00419.x</identifier><identifier>PMID: 9734069</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Science Ltd</publisher><subject>Animals ; Base Sequence ; ciscoes ; Consensus Sequence ; Conservation of Natural Resources ; control region ; Coregonus ; Coregonus artedi ; Coregonus clupeaformis ; Coregonus hoyi ; Coregonus kiyi ; Coregonus zenithicus ; D-loop ; DNA Primers - chemistry ; DNA, Mitochondrial - chemistry ; Electrophoresis, Agar Gel ; Fresh Water ; Freshwater ; Genetic Variation - genetics ; Great Lakes Region ; Locus Control Region - genetics ; mitochondrial DNA (mtDNA) ; Molecular Sequence Data ; Polymerase Chain Reaction ; Salmonidae - classification ; Salmonidae - genetics ; Sequence Alignment ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid</subject><ispartof>Molecular ecology, 1998-09, Vol.7 (9), p.1091-1096</ispartof><rights>1998 Blackwell Science Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4329-fba65bf3df39b0117f0e7b157cad692d822acb1395c99d451e1324d12560dc863</citedby><cites>FETCH-LOGICAL-c4329-fba65bf3df39b0117f0e7b157cad692d822acb1395c99d451e1324d12560dc863</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1046%2Fj.1365-294x.1998.00419.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1046%2Fj.1365-294x.1998.00419.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9734069$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>REED, KENT M.</creatorcontrib><creatorcontrib>DORSCHNER, MICHAEL O.</creatorcontrib><creatorcontrib>TODD, THOMAS N.</creatorcontrib><creatorcontrib>PHILLIPS, RUTH B.</creatorcontrib><title>Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Sequence variation in the control region (D‐loop) of the mitochondrial DNA (mtDNA) was examined to assess the genetic distinctiveness of the shortjaw cisco (Coregonus zenithicus). Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments containing the entire D‐loop were amplified by PCR from specimens of C. zenithicus and the related species C. artedi, C. hoyi, C. kiyi, and C. clupeaformis. DNA sequence analysis revealed high similarity within and among species and shared polymorphism for length variants. Based on this analysis, the shortjaw cisco is not genetically distinct from other cisco species.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>ciscoes</subject><subject>Consensus Sequence</subject><subject>Conservation of Natural Resources</subject><subject>control region</subject><subject>Coregonus</subject><subject>Coregonus artedi</subject><subject>Coregonus clupeaformis</subject><subject>Coregonus hoyi</subject><subject>Coregonus kiyi</subject><subject>Coregonus zenithicus</subject><subject>D-loop</subject><subject>DNA Primers - chemistry</subject><subject>DNA, Mitochondrial - chemistry</subject><subject>Electrophoresis, Agar Gel</subject><subject>Fresh Water</subject><subject>Freshwater</subject><subject>Genetic Variation - genetics</subject><subject>Great Lakes Region</subject><subject>Locus Control Region - genetics</subject><subject>mitochondrial DNA (mtDNA)</subject><subject>Molecular Sequence Data</subject><subject>Polymerase Chain Reaction</subject><subject>Salmonidae - classification</subject><subject>Salmonidae - genetics</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkVFv0zAUhS0EGmXjJyD5CcFDgh3HTox42croJnUbCNB4sxzH3tw6cbFTkf4LfjLOWvYKT_dK53zHuj4AQIxyjEr2bpVjwmhW8HLMMed1jlCJeT4-AbO_wo-nYIY4KzKMavIcvIhxhRAmBaVH4IhXpESMz8Dvr_rnVvdKQ9lLt4s2Qm_gcK9hZwev7n3fBisd_Hh9CpXvh-AdDPrO-n7yKRuV1xG-udP9NsK5T5JP29v3cJCj731nFbTdxlklh8REaHx4SF8ELQe4lOtEx41WNk3jvFqfgGdGuqhfHuYx-P7p_Nv8IlveLC7np8tMlaTgmWkko40hrSG8QRhXBumqwbRSsmW8aOuikKrBhFPFeVtSrNPpZYsLylCrakaOwet97ib49ANxEF06Rjsne-23UVSE45oi_k8jrhCveYmTsd4bVfAxBm3EJthOhp3ASEytiZWYyhFTa2JqTTy0JsaEvjq8sW063T6Ch5qS_mGv_7JO7_47V1ydz9OS8GyP2zjo8RGXYS1YRSoqbq8X4vaCLb6Q5Zn4TP4A4XW30g</recordid><startdate>199809</startdate><enddate>199809</enddate><creator>REED, KENT M.</creator><creator>DORSCHNER, MICHAEL O.</creator><creator>TODD, THOMAS N.</creator><creator>PHILLIPS, RUTH B.</creator><general>Blackwell Science Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>199809</creationdate><title>Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock</title><author>REED, KENT M. ; DORSCHNER, MICHAEL O. ; TODD, THOMAS N. ; PHILLIPS, RUTH B.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4329-fba65bf3df39b0117f0e7b157cad692d822acb1395c99d451e1324d12560dc863</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>ciscoes</topic><topic>Consensus Sequence</topic><topic>Conservation of Natural Resources</topic><topic>control region</topic><topic>Coregonus</topic><topic>Coregonus artedi</topic><topic>Coregonus clupeaformis</topic><topic>Coregonus hoyi</topic><topic>Coregonus kiyi</topic><topic>Coregonus zenithicus</topic><topic>D-loop</topic><topic>DNA Primers - chemistry</topic><topic>DNA, Mitochondrial - chemistry</topic><topic>Electrophoresis, Agar Gel</topic><topic>Fresh Water</topic><topic>Freshwater</topic><topic>Genetic Variation - genetics</topic><topic>Great Lakes Region</topic><topic>Locus Control Region - genetics</topic><topic>mitochondrial DNA (mtDNA)</topic><topic>Molecular Sequence Data</topic><topic>Polymerase Chain Reaction</topic><topic>Salmonidae - classification</topic><topic>Salmonidae - genetics</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>REED, KENT M.</creatorcontrib><creatorcontrib>DORSCHNER, MICHAEL O.</creatorcontrib><creatorcontrib>TODD, THOMAS N.</creatorcontrib><creatorcontrib>PHILLIPS, RUTH B.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>REED, KENT M.</au><au>DORSCHNER, MICHAEL O.</au><au>TODD, THOMAS N.</au><au>PHILLIPS, RUTH B.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>1998-09</date><risdate>1998</risdate><volume>7</volume><issue>9</issue><spage>1091</spage><epage>1096</epage><pages>1091-1096</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Sequence variation in the control region (D‐loop) of the mitochondrial DNA (mtDNA) was examined to assess the genetic distinctiveness of the shortjaw cisco (Coregonus zenithicus). Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments containing the entire D‐loop were amplified by PCR from specimens of C. zenithicus and the related species C. artedi, C. hoyi, C. kiyi, and C. clupeaformis. DNA sequence analysis revealed high similarity within and among species and shared polymorphism for length variants. Based on this analysis, the shortjaw cisco is not genetically distinct from other cisco species.</abstract><cop>Oxford, UK</cop><pub>Blackwell Science Ltd</pub><pmid>9734069</pmid><doi>10.1046/j.1365-294x.1998.00419.x</doi><tpages>6</tpages></addata></record> |
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| ispartof | Molecular ecology, 1998-09, Vol.7 (9), p.1091-1096 |
| issn | 0962-1083 1365-294X |
| language | eng |
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| source | MEDLINE; Wiley Blackwell Journals |
| subjects | Animals Base Sequence ciscoes Consensus Sequence Conservation of Natural Resources control region Coregonus Coregonus artedi Coregonus clupeaformis Coregonus hoyi Coregonus kiyi Coregonus zenithicus D-loop DNA Primers - chemistry DNA, Mitochondrial - chemistry Electrophoresis, Agar Gel Fresh Water Freshwater Genetic Variation - genetics Great Lakes Region Locus Control Region - genetics mitochondrial DNA (mtDNA) Molecular Sequence Data Polymerase Chain Reaction Salmonidae - classification Salmonidae - genetics Sequence Alignment Sequence Analysis, DNA Sequence Homology, Nucleic Acid |
| title | Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock |
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