Molecular cloning and characterization of gilthead sea bream ( Sparus aurata) growth hormone receptor (GHR). Assessment of alternative splicing
The full-length growth hormone receptor (GHR) of gilthead sea bream ( Sparus aurata) was cloned and sequenced by RT-PCR and rapid amplification of 5′and 3′ends. The open reading frame codes for a mature 609 amino acid protein with a hydrophobic transmembrane region and all the characteristic motifs...
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Veröffentlicht in: | Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 2003-09, Vol.136 (1), p.1-13 |
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creator | Calduch-Giner, Josep A Mingarro, Mónica Vega-Rubı́n de Celis, Silvia Boujard, Daniel Pérez-Sánchez, Jaume |
description | The full-length growth hormone receptor (GHR) of gilthead sea bream (
Sparus aurata) was cloned and sequenced by RT-PCR and rapid amplification of 5′and 3′ends. The open reading frame codes for a mature 609 amino acid protein with a hydrophobic transmembrane region and all the characteristic motifs of GHRs. Sequence analysis revealed a 96 and 76% of amino acid identity with black sea bream (
Acanthopagrus schlegeli) and turbot (
Scophthalmus maximus) GHRs, respectively, but this amino acid identity decreases up to 52% for goldfish (
Carassius auratus) GHR. By means of real-time PCR assays, concurrent changes in the hepatic expression of GHRs and insulin-like growth factor-I (IGF-I) was evidenced. Moreover, their regulation occurred in conjunction with the summer spurt of growth rates and circulating levels of GH and IGF-I. Search of alternative splicing was carried out exhaustively for gilthead sea bream GHR, but Northern blot and 3′ RACE failed to demonstrate the occurrence of short alternative messengers. Besides, RT-PCR screening did not reveal deletions or insertions that could lead to alternative reading frames. In agreement with this, cross-linking assays only evidenced two protein bands that match well with the size of glycosylated and non-glycosylated forms of the full-length GHR. If so, it appears that alternative splicing at the 3′end does not occur in gilthead sea bream, although different messengers for truncated or longer GHR variants already exist in turbot and black sea bream, respectively. The physiological relevance of this finding remains unclear, but perhaps it points out large inter-species differences in the heterogeneity of the GHR population. |
doi_str_mv | 10.1016/S1096-4959(03)00150-7 |
format | Article |
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Sparus aurata) was cloned and sequenced by RT-PCR and rapid amplification of 5′and 3′ends. The open reading frame codes for a mature 609 amino acid protein with a hydrophobic transmembrane region and all the characteristic motifs of GHRs. Sequence analysis revealed a 96 and 76% of amino acid identity with black sea bream (
Acanthopagrus schlegeli) and turbot (
Scophthalmus maximus) GHRs, respectively, but this amino acid identity decreases up to 52% for goldfish (
Carassius auratus) GHR. By means of real-time PCR assays, concurrent changes in the hepatic expression of GHRs and insulin-like growth factor-I (IGF-I) was evidenced. Moreover, their regulation occurred in conjunction with the summer spurt of growth rates and circulating levels of GH and IGF-I. Search of alternative splicing was carried out exhaustively for gilthead sea bream GHR, but Northern blot and 3′ RACE failed to demonstrate the occurrence of short alternative messengers. Besides, RT-PCR screening did not reveal deletions or insertions that could lead to alternative reading frames. In agreement with this, cross-linking assays only evidenced two protein bands that match well with the size of glycosylated and non-glycosylated forms of the full-length GHR. If so, it appears that alternative splicing at the 3′end does not occur in gilthead sea bream, although different messengers for truncated or longer GHR variants already exist in turbot and black sea bream, respectively. The physiological relevance of this finding remains unclear, but perhaps it points out large inter-species differences in the heterogeneity of the GHR population.</description><identifier>ISSN: 1096-4959</identifier><identifier>EISSN: 1879-1107</identifier><identifier>DOI: 10.1016/S1096-4959(03)00150-7</identifier><identifier>PMID: 12941635</identifier><language>eng</language><publisher>England: Elsevier Inc</publisher><subject>Acanthopagrus schlegeli ; Alternative Splicing ; Animals ; Base Sequence ; Carassius auratus ; Cloning and sequence ; Cloning, Molecular ; Cross-linking ; Evolution, Molecular ; Genetic Heterogeneity ; Gilthead sea bream ; Growth hormone receptor ; Insulin like growth factor-I ; Insulin-Like Growth Factor I - genetics ; Liver - metabolism ; Molecular Sequence Data ; Northern blot ; RACE analysis ; Real-time PCR ; Receptors, Somatotropin - genetics ; Reverse Transcriptase Polymerase Chain Reaction ; RNA, Messenger - analysis ; RT-PCR screening ; Scophthalmus maximus ; Sea Bream - genetics ; Sequence Analysis, Protein ; Sequence Homology ; Sparus aurata ; Teleost</subject><ispartof>Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 2003-09, Vol.136 (1), p.1-13</ispartof><rights>2003 Elsevier Science Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c510t-dee60ce9f6426889fa6af9fb96569f046ac55f7d2071222220622cdc518bbe0e3</citedby><cites>FETCH-LOGICAL-c510t-dee60ce9f6426889fa6af9fb96569f046ac55f7d2071222220622cdc518bbe0e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1096495903001507$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12941635$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Calduch-Giner, Josep A</creatorcontrib><creatorcontrib>Mingarro, Mónica</creatorcontrib><creatorcontrib>Vega-Rubı́n de Celis, Silvia</creatorcontrib><creatorcontrib>Boujard, Daniel</creatorcontrib><creatorcontrib>Pérez-Sánchez, Jaume</creatorcontrib><title>Molecular cloning and characterization of gilthead sea bream ( Sparus aurata) growth hormone receptor (GHR). Assessment of alternative splicing</title><title>Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology</title><addtitle>Comp Biochem Physiol B Biochem Mol Biol</addtitle><description>The full-length growth hormone receptor (GHR) of gilthead sea bream (
Sparus aurata) was cloned and sequenced by RT-PCR and rapid amplification of 5′and 3′ends. The open reading frame codes for a mature 609 amino acid protein with a hydrophobic transmembrane region and all the characteristic motifs of GHRs. Sequence analysis revealed a 96 and 76% of amino acid identity with black sea bream (
Acanthopagrus schlegeli) and turbot (
Scophthalmus maximus) GHRs, respectively, but this amino acid identity decreases up to 52% for goldfish (
Carassius auratus) GHR. By means of real-time PCR assays, concurrent changes in the hepatic expression of GHRs and insulin-like growth factor-I (IGF-I) was evidenced. Moreover, their regulation occurred in conjunction with the summer spurt of growth rates and circulating levels of GH and IGF-I. Search of alternative splicing was carried out exhaustively for gilthead sea bream GHR, but Northern blot and 3′ RACE failed to demonstrate the occurrence of short alternative messengers. Besides, RT-PCR screening did not reveal deletions or insertions that could lead to alternative reading frames. In agreement with this, cross-linking assays only evidenced two protein bands that match well with the size of glycosylated and non-glycosylated forms of the full-length GHR. If so, it appears that alternative splicing at the 3′end does not occur in gilthead sea bream, although different messengers for truncated or longer GHR variants already exist in turbot and black sea bream, respectively. The physiological relevance of this finding remains unclear, but perhaps it points out large inter-species differences in the heterogeneity of the GHR population.</description><subject>Acanthopagrus schlegeli</subject><subject>Alternative Splicing</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Carassius auratus</subject><subject>Cloning and sequence</subject><subject>Cloning, Molecular</subject><subject>Cross-linking</subject><subject>Evolution, Molecular</subject><subject>Genetic Heterogeneity</subject><subject>Gilthead sea bream</subject><subject>Growth hormone receptor</subject><subject>Insulin like growth factor-I</subject><subject>Insulin-Like Growth Factor I - genetics</subject><subject>Liver - metabolism</subject><subject>Molecular Sequence Data</subject><subject>Northern blot</subject><subject>RACE analysis</subject><subject>Real-time PCR</subject><subject>Receptors, Somatotropin - genetics</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>RNA, Messenger - analysis</subject><subject>RT-PCR screening</subject><subject>Scophthalmus maximus</subject><subject>Sea Bream - genetics</subject><subject>Sequence Analysis, Protein</subject><subject>Sequence Homology</subject><subject>Sparus aurata</subject><subject>Teleost</subject><issn>1096-4959</issn><issn>1879-1107</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFv1DAQhS1ERUvhJ4B8QruHtONk7cQnVFXQIrWqROFsTZzJrlESB9tpBX-Cv0zSXcSxc5k5fO89aR5j7wScCRDq_F6AVtlGS72CYg0gJGTlC3YiqlJnQkD5cr7_IcfsdYw_AIpKFOIVOxa53ghVyBP259Z3ZKcOA7edH9yw5Tg03O4woE0U3G9Mzg_ct3zrurQjbHgk5HUg7PmK348YpshxCphwzbfBP6Yd3_nQ-4F4IEtj8oGvrq6_rs_4RYwUY09DWgyxmwOG2f-BeBw7Z-f0N-yoxS7S28M-Zd8_f_p2eZ3d3F19uby4yawUkLKGSIEl3apNrqpKt6iw1W2tlVS6hY1CK2VbNjmUIl8GVJ7bZhZXdU1AxSn7sPcdg_85UUymd9FS1-FAfoqmLFQpJeTPgqLSRSGhnEG5B23wMQZqzRhcj-GXEWCWysxTZWbpw0Bhniozi-79IWCqe2r-qw4dzcDHPUDzPx4cBROto8FS4-b_JtN490zEX8mgp6I</recordid><startdate>20030901</startdate><enddate>20030901</enddate><creator>Calduch-Giner, Josep A</creator><creator>Mingarro, Mónica</creator><creator>Vega-Rubı́n de Celis, Silvia</creator><creator>Boujard, Daniel</creator><creator>Pérez-Sánchez, Jaume</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20030901</creationdate><title>Molecular cloning and characterization of gilthead sea bream ( Sparus aurata) growth hormone receptor (GHR). Assessment of alternative splicing</title><author>Calduch-Giner, Josep A ; Mingarro, Mónica ; Vega-Rubı́n de Celis, Silvia ; Boujard, Daniel ; Pérez-Sánchez, Jaume</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-dee60ce9f6426889fa6af9fb96569f046ac55f7d2071222220622cdc518bbe0e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Acanthopagrus schlegeli</topic><topic>Alternative Splicing</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Carassius auratus</topic><topic>Cloning and sequence</topic><topic>Cloning, Molecular</topic><topic>Cross-linking</topic><topic>Evolution, Molecular</topic><topic>Genetic Heterogeneity</topic><topic>Gilthead sea bream</topic><topic>Growth hormone receptor</topic><topic>Insulin like growth factor-I</topic><topic>Insulin-Like Growth Factor I - genetics</topic><topic>Liver - metabolism</topic><topic>Molecular Sequence Data</topic><topic>Northern blot</topic><topic>RACE analysis</topic><topic>Real-time PCR</topic><topic>Receptors, Somatotropin - genetics</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>RNA, Messenger - analysis</topic><topic>RT-PCR screening</topic><topic>Scophthalmus maximus</topic><topic>Sea Bream - genetics</topic><topic>Sequence Analysis, Protein</topic><topic>Sequence Homology</topic><topic>Sparus aurata</topic><topic>Teleost</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Calduch-Giner, Josep A</creatorcontrib><creatorcontrib>Mingarro, Mónica</creatorcontrib><creatorcontrib>Vega-Rubı́n de Celis, Silvia</creatorcontrib><creatorcontrib>Boujard, Daniel</creatorcontrib><creatorcontrib>Pérez-Sánchez, Jaume</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Calduch-Giner, Josep A</au><au>Mingarro, Mónica</au><au>Vega-Rubı́n de Celis, Silvia</au><au>Boujard, Daniel</au><au>Pérez-Sánchez, Jaume</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular cloning and characterization of gilthead sea bream ( Sparus aurata) growth hormone receptor (GHR). Assessment of alternative splicing</atitle><jtitle>Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology</jtitle><addtitle>Comp Biochem Physiol B Biochem Mol Biol</addtitle><date>2003-09-01</date><risdate>2003</risdate><volume>136</volume><issue>1</issue><spage>1</spage><epage>13</epage><pages>1-13</pages><issn>1096-4959</issn><eissn>1879-1107</eissn><abstract>The full-length growth hormone receptor (GHR) of gilthead sea bream (
Sparus aurata) was cloned and sequenced by RT-PCR and rapid amplification of 5′and 3′ends. The open reading frame codes for a mature 609 amino acid protein with a hydrophobic transmembrane region and all the characteristic motifs of GHRs. Sequence analysis revealed a 96 and 76% of amino acid identity with black sea bream (
Acanthopagrus schlegeli) and turbot (
Scophthalmus maximus) GHRs, respectively, but this amino acid identity decreases up to 52% for goldfish (
Carassius auratus) GHR. By means of real-time PCR assays, concurrent changes in the hepatic expression of GHRs and insulin-like growth factor-I (IGF-I) was evidenced. Moreover, their regulation occurred in conjunction with the summer spurt of growth rates and circulating levels of GH and IGF-I. Search of alternative splicing was carried out exhaustively for gilthead sea bream GHR, but Northern blot and 3′ RACE failed to demonstrate the occurrence of short alternative messengers. Besides, RT-PCR screening did not reveal deletions or insertions that could lead to alternative reading frames. In agreement with this, cross-linking assays only evidenced two protein bands that match well with the size of glycosylated and non-glycosylated forms of the full-length GHR. If so, it appears that alternative splicing at the 3′end does not occur in gilthead sea bream, although different messengers for truncated or longer GHR variants already exist in turbot and black sea bream, respectively. The physiological relevance of this finding remains unclear, but perhaps it points out large inter-species differences in the heterogeneity of the GHR population.</abstract><cop>England</cop><pub>Elsevier Inc</pub><pmid>12941635</pmid><doi>10.1016/S1096-4959(03)00150-7</doi><tpages>13</tpages></addata></record> |
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source | MEDLINE; Elsevier ScienceDirect Journals |
subjects | Acanthopagrus schlegeli Alternative Splicing Animals Base Sequence Carassius auratus Cloning and sequence Cloning, Molecular Cross-linking Evolution, Molecular Genetic Heterogeneity Gilthead sea bream Growth hormone receptor Insulin like growth factor-I Insulin-Like Growth Factor I - genetics Liver - metabolism Molecular Sequence Data Northern blot RACE analysis Real-time PCR Receptors, Somatotropin - genetics Reverse Transcriptase Polymerase Chain Reaction RNA, Messenger - analysis RT-PCR screening Scophthalmus maximus Sea Bream - genetics Sequence Analysis, Protein Sequence Homology Sparus aurata Teleost |
title | Molecular cloning and characterization of gilthead sea bream ( Sparus aurata) growth hormone receptor (GHR). Assessment of alternative splicing |
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