Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.]
A mosaic minisatellite region has been identified in the mitochondrial genome of Norway spruce (Picea abies). The array was composed of three tandem repeats PaTR1 (32 bp), PaTR2a (26 bp) and PaTR2b (26 bp). PaTR2a and PaTR2b differed by one base substitution. The analysis of 92 trees covering the wh...
Gespeichert in:
| Veröffentlicht in: | Theoretical and applied genetics 2003-08, Vol.107 (3), p.574-580 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 580 |
|---|---|
| container_issue | 3 |
| container_start_page | 574 |
| container_title | Theoretical and applied genetics |
| container_volume | 107 |
| creator | BASTIEN, D FAVRE, J. M COLLIGNON, A. M SPERISEN, C JEANDROZ, S |
| description | A mosaic minisatellite region has been identified in the mitochondrial genome of Norway spruce (Picea abies). The array was composed of three tandem repeats PaTR1 (32 bp), PaTR2a (26 bp) and PaTR2b (26 bp). PaTR2a and PaTR2b differed by one base substitution. The analysis of 92 trees covering the whole natural distribution area of the species allowed detection of 11 length variants ranging from 131 bp to 447 bp. This high intra-specific polymorphism relies on variation in the number of the tandem repeats. Population genetic parameters estimated among 14 populations suggested high population differentiation (Gst = 0.749). The phylogenetic analysis of the 11 sequenced length variants has been performed using a parsimony approach. The topology of the tree showed a good association of groups with geographical origin and a low level of size homoplasy. The phylogenetic reconstruction also suggests that this minisatellite locus has mainly evolved by an increase in the repeat copy number. |
| doi_str_mv | 10.1007/s00122-003-1284-2 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_73616466</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2220662101</sourcerecordid><originalsourceid>FETCH-LOGICAL-c475t-c82d1d6108c02a459ede6fd80c489142e5382ebac3081b2c31fb1571b386ac6e3</originalsourceid><addsrcrecordid>eNqF0U2LFDEQBuBGFHdc_QFeNAiKHnqsVJJO5riMnzisgu5JJFSn006Wns6YdCPrrzfDDCx48ZRDPW-F4q2qxxyWHEC_zgAcsQYQNUcja7xTLbgUWCNKvFstACTUSis8qx7kfA0AqEDcr844agVa46Ka1ltK5Cafwh-aQhxZ7BmxXcwUHNuFMWSa_DCEybMhujmzMLJp68toim4bxy4FGtiby4tD8DKm33TD8j7NzrPvX4LzxKgNPrOXm-Ur9olSnpY_Hlb3ehqyf3R6z6urd2-_rT_Um8_vP64vNrWTWk21M9jxruFgHCBJtfKdb_rOgJNmxSV6JQz6lpwAw1t0gvctV5q3wjTkGi_OqxfHvfsUf80-T3YXsivX0OjjnK0WDW9k0_wXcmNE00hV4LN_4HWc01iOsAZhhVooUxA_Ipdizsn3dp_CjtKN5WAPxdljcbYUZw_FWSyZJ6fFc7vz3W3i1FQBz0-AsqOhTzS6kG-dKl1rrYt7enQ9RUs_UzFXXxF4U76UqGEl_gLkHKfo</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>820927358</pqid></control><display><type>article</type><title>Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.]</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>BASTIEN, D ; FAVRE, J. M ; COLLIGNON, A. M ; SPERISEN, C ; JEANDROZ, S</creator><creatorcontrib>BASTIEN, D ; FAVRE, J. M ; COLLIGNON, A. M ; SPERISEN, C ; JEANDROZ, S</creatorcontrib><description>A mosaic minisatellite region has been identified in the mitochondrial genome of Norway spruce (Picea abies). The array was composed of three tandem repeats PaTR1 (32 bp), PaTR2a (26 bp) and PaTR2b (26 bp). PaTR2a and PaTR2b differed by one base substitution. The analysis of 92 trees covering the whole natural distribution area of the species allowed detection of 11 length variants ranging from 131 bp to 447 bp. This high intra-specific polymorphism relies on variation in the number of the tandem repeats. Population genetic parameters estimated among 14 populations suggested high population differentiation (Gst = 0.749). The phylogenetic analysis of the 11 sequenced length variants has been performed using a parsimony approach. The topology of the tree showed a good association of groups with geographical origin and a low level of size homoplasy. The phylogenetic reconstruction also suggests that this minisatellite locus has mainly evolved by an increase in the repeat copy number.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-003-1284-2</identifier><identifier>PMID: 12750772</identifier><identifier>CODEN: THAGA6</identifier><language>eng</language><publisher>Heidelberg: Springer-Verlag</publisher><subject>Base Sequence ; Biological and medical sciences ; DNA Primers ; DNA, Mitochondrial - genetics ; Electrophoresis, Agar Gel ; Fundamental and applied biological sciences. Psychology ; Genetics ; Genetics, Population ; Genomics ; Geography ; Minisatellite Repeats - genetics ; Mitochondrial DNA ; Molecular and cellular biology ; Molecular genetics ; Molecular Sequence Data ; Mutagenesis. Repair ; Phylogeny ; Picea - genetics ; Sequence Analysis, DNA</subject><ispartof>Theoretical and applied genetics, 2003-08, Vol.107 (3), p.574-580</ispartof><rights>2003 INIST-CNRS</rights><rights>Springer-Verlag 2003</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c475t-c82d1d6108c02a459ede6fd80c489142e5382ebac3081b2c31fb1571b386ac6e3</citedby><cites>FETCH-LOGICAL-c475t-c82d1d6108c02a459ede6fd80c489142e5382ebac3081b2c31fb1571b386ac6e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15040777$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12750772$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>BASTIEN, D</creatorcontrib><creatorcontrib>FAVRE, J. M</creatorcontrib><creatorcontrib>COLLIGNON, A. M</creatorcontrib><creatorcontrib>SPERISEN, C</creatorcontrib><creatorcontrib>JEANDROZ, S</creatorcontrib><title>Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.]</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><description>A mosaic minisatellite region has been identified in the mitochondrial genome of Norway spruce (Picea abies). The array was composed of three tandem repeats PaTR1 (32 bp), PaTR2a (26 bp) and PaTR2b (26 bp). PaTR2a and PaTR2b differed by one base substitution. The analysis of 92 trees covering the whole natural distribution area of the species allowed detection of 11 length variants ranging from 131 bp to 447 bp. This high intra-specific polymorphism relies on variation in the number of the tandem repeats. Population genetic parameters estimated among 14 populations suggested high population differentiation (Gst = 0.749). The phylogenetic analysis of the 11 sequenced length variants has been performed using a parsimony approach. The topology of the tree showed a good association of groups with geographical origin and a low level of size homoplasy. The phylogenetic reconstruction also suggests that this minisatellite locus has mainly evolved by an increase in the repeat copy number.</description><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>DNA Primers</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Electrophoresis, Agar Gel</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetics</subject><subject>Genetics, Population</subject><subject>Genomics</subject><subject>Geography</subject><subject>Minisatellite Repeats - genetics</subject><subject>Mitochondrial DNA</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis. Repair</subject><subject>Phylogeny</subject><subject>Picea - genetics</subject><subject>Sequence Analysis, DNA</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqF0U2LFDEQBuBGFHdc_QFeNAiKHnqsVJJO5riMnzisgu5JJFSn006Wns6YdCPrrzfDDCx48ZRDPW-F4q2qxxyWHEC_zgAcsQYQNUcja7xTLbgUWCNKvFstACTUSis8qx7kfA0AqEDcr844agVa46Ka1ltK5Cafwh-aQhxZ7BmxXcwUHNuFMWSa_DCEybMhujmzMLJp68toim4bxy4FGtiby4tD8DKm33TD8j7NzrPvX4LzxKgNPrOXm-Ur9olSnpY_Hlb3ehqyf3R6z6urd2-_rT_Um8_vP64vNrWTWk21M9jxruFgHCBJtfKdb_rOgJNmxSV6JQz6lpwAw1t0gvctV5q3wjTkGi_OqxfHvfsUf80-T3YXsivX0OjjnK0WDW9k0_wXcmNE00hV4LN_4HWc01iOsAZhhVooUxA_Ipdizsn3dp_CjtKN5WAPxdljcbYUZw_FWSyZJ6fFc7vz3W3i1FQBz0-AsqOhTzS6kG-dKl1rrYt7enQ9RUs_UzFXXxF4U76UqGEl_gLkHKfo</recordid><startdate>20030801</startdate><enddate>20030801</enddate><creator>BASTIEN, D</creator><creator>FAVRE, J. M</creator><creator>COLLIGNON, A. M</creator><creator>SPERISEN, C</creator><creator>JEANDROZ, S</creator><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20030801</creationdate><title>Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.]</title><author>BASTIEN, D ; FAVRE, J. M ; COLLIGNON, A. M ; SPERISEN, C ; JEANDROZ, S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c475t-c82d1d6108c02a459ede6fd80c489142e5382ebac3081b2c31fb1571b386ac6e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>DNA Primers</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Electrophoresis, Agar Gel</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetics</topic><topic>Genetics, Population</topic><topic>Genomics</topic><topic>Geography</topic><topic>Minisatellite Repeats - genetics</topic><topic>Mitochondrial DNA</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Molecular Sequence Data</topic><topic>Mutagenesis. Repair</topic><topic>Phylogeny</topic><topic>Picea - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>BASTIEN, D</creatorcontrib><creatorcontrib>FAVRE, J. M</creatorcontrib><creatorcontrib>COLLIGNON, A. M</creatorcontrib><creatorcontrib>SPERISEN, C</creatorcontrib><creatorcontrib>JEANDROZ, S</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>BASTIEN, D</au><au>FAVRE, J. M</au><au>COLLIGNON, A. M</au><au>SPERISEN, C</au><au>JEANDROZ, S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.]</atitle><jtitle>Theoretical and applied genetics</jtitle><addtitle>Theor Appl Genet</addtitle><date>2003-08-01</date><risdate>2003</risdate><volume>107</volume><issue>3</issue><spage>574</spage><epage>580</epage><pages>574-580</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><coden>THAGA6</coden><abstract>A mosaic minisatellite region has been identified in the mitochondrial genome of Norway spruce (Picea abies). The array was composed of three tandem repeats PaTR1 (32 bp), PaTR2a (26 bp) and PaTR2b (26 bp). PaTR2a and PaTR2b differed by one base substitution. The analysis of 92 trees covering the whole natural distribution area of the species allowed detection of 11 length variants ranging from 131 bp to 447 bp. This high intra-specific polymorphism relies on variation in the number of the tandem repeats. Population genetic parameters estimated among 14 populations suggested high population differentiation (Gst = 0.749). The phylogenetic analysis of the 11 sequenced length variants has been performed using a parsimony approach. The topology of the tree showed a good association of groups with geographical origin and a low level of size homoplasy. The phylogenetic reconstruction also suggests that this minisatellite locus has mainly evolved by an increase in the repeat copy number.</abstract><cop>Heidelberg</cop><cop>Berlin</cop><pub>Springer-Verlag</pub><pmid>12750772</pmid><doi>10.1007/s00122-003-1284-2</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0040-5752 |
| ispartof | Theoretical and applied genetics, 2003-08, Vol.107 (3), p.574-580 |
| issn | 0040-5752 1432-2242 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_73616466 |
| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Base Sequence Biological and medical sciences DNA Primers DNA, Mitochondrial - genetics Electrophoresis, Agar Gel Fundamental and applied biological sciences. Psychology Genetics Genetics, Population Genomics Geography Minisatellite Repeats - genetics Mitochondrial DNA Molecular and cellular biology Molecular genetics Molecular Sequence Data Mutagenesis. Repair Phylogeny Picea - genetics Sequence Analysis, DNA |
| title | Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.] |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T04%3A54%3A13IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characterization%20of%20a%20mosaic%20minisatellite%20locus%20in%20the%20mitochondrial%20DNA%20of%20Norway%20spruce%20%5BPicea%20abies%20(L.)%20Karst.%5D&rft.jtitle=Theoretical%20and%20applied%20genetics&rft.au=BASTIEN,%20D&rft.date=2003-08-01&rft.volume=107&rft.issue=3&rft.spage=574&rft.epage=580&rft.pages=574-580&rft.issn=0040-5752&rft.eissn=1432-2242&rft.coden=THAGA6&rft_id=info:doi/10.1007/s00122-003-1284-2&rft_dat=%3Cproquest_cross%3E2220662101%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=820927358&rft_id=info:pmid/12750772&rfr_iscdi=true |