Molecular characterization of the mitochondrial cytochrome oxidase I gene of Oestridae species causing obligate myiasis
. A 688‐bp region of the mitochondrial cytochrome oxidase I gene was sequenced from larvae of 18 species of Oestridae causing obligate myiasis. Larvae belonged to the four Oestridae subfamilies (Cuterebrinae, Gasterophilinae, Hypodermatinae and Oestrinae), which are commonly found throughout the wo...
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description | . A 688‐bp region of the mitochondrial cytochrome oxidase I gene was sequenced from larvae of 18 species of Oestridae causing obligate myiasis. Larvae belonged to the four Oestridae subfamilies (Cuterebrinae, Gasterophilinae, Hypodermatinae and Oestrinae), which are commonly found throughout the world. Analysis of both nucleotide and amino acid data was performed. Nucleotide sequences included 385 conserved sites and 303 variable sites; mean nucleotide variation between all species was 18.1% and variation within each subfamily ranged from 5.3% to 13.34%. Intraspecific pairwise divergences ranged from 0.14% to 1.59%, and interspecific variation ranged from 0.7% to 27%. Of the 229 amino acids, 76 were variable (60 of which were phylogenetically informative), with some highly conserved residues identified within each subfamily. Phylogenetic analysis showed a strong divergence among the four subfamilies, concordant with classical taxonomy based on morphological and biological features. This study provides the first molecular data set for myiasis‐causing Oestridae species, providing an essential database for the molecular identification of these parasites and the assessment of phylogenetic relationships within family Oestridae. |
doi_str_mv | 10.1046/j.1365-2915.2003.00442.x |
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A 688‐bp region of the mitochondrial cytochrome oxidase I gene was sequenced from larvae of 18 species of Oestridae causing obligate myiasis. Larvae belonged to the four Oestridae subfamilies (Cuterebrinae, Gasterophilinae, Hypodermatinae and Oestrinae), which are commonly found throughout the world. Analysis of both nucleotide and amino acid data was performed. Nucleotide sequences included 385 conserved sites and 303 variable sites; mean nucleotide variation between all species was 18.1% and variation within each subfamily ranged from 5.3% to 13.34%. Intraspecific pairwise divergences ranged from 0.14% to 1.59%, and interspecific variation ranged from 0.7% to 27%. Of the 229 amino acids, 76 were variable (60 of which were phylogenetically informative), with some highly conserved residues identified within each subfamily. Phylogenetic analysis showed a strong divergence among the four subfamilies, concordant with classical taxonomy based on morphological and biological features. This study provides the first molecular data set for myiasis‐causing Oestridae species, providing an essential database for the molecular identification of these parasites and the assessment of phylogenetic relationships within family Oestridae.</description><identifier>ISSN: 0269-283X</identifier><identifier>EISSN: 1365-2915</identifier><identifier>DOI: 10.1046/j.1365-2915.2003.00442.x</identifier><identifier>PMID: 12941016</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Science Ltd</publisher><subject>amino acid sequences ; Animals ; Base Sequence ; bot flies ; Codon - genetics ; Cytochrome oxidase I ; cytochrome-c oxidase ; Diptera - classification ; Diptera - enzymology ; Diptera - genetics ; DNA - genetics ; DNA - isolation & purification ; DNA Primers ; Electron Transport Complex IV - genetics ; Genes ; genetic variation ; identification ; insect genetics ; Larva ; Mitochondria - enzymology ; Mitochondria - genetics ; mitochondrial DNA ; molecular sequence data ; molecular systematics ; myiasis ; Myiasis - veterinary ; nucleotide sequences ; Oestridae ; pest identification ; phylogenesis ; Phylogeny ; Polymerase Chain Reaction - methods ; Polymorphism, Genetic ; sequence alignment ; structural genes</subject><ispartof>Medical and veterinary entomology, 2003-09, Vol.17 (3), p.307-315</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5522-22728a340e8b07fe934869f62f886d4e6b2e24aaf0054bae1d55b9e9755fe7343</citedby><cites>FETCH-LOGICAL-c5522-22728a340e8b07fe934869f62f886d4e6b2e24aaf0054bae1d55b9e9755fe7343</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1046%2Fj.1365-2915.2003.00442.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1046%2Fj.1365-2915.2003.00442.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12941016$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Otranto, D</creatorcontrib><creatorcontrib>Traversa, D</creatorcontrib><creatorcontrib>Guida, B</creatorcontrib><creatorcontrib>Tarsitano, E</creatorcontrib><creatorcontrib>Fiorente, P</creatorcontrib><creatorcontrib>Stevens, J.R</creatorcontrib><title>Molecular characterization of the mitochondrial cytochrome oxidase I gene of Oestridae species causing obligate myiasis</title><title>Medical and veterinary entomology</title><addtitle>Med Vet Entomol</addtitle><description>. A 688‐bp region of the mitochondrial cytochrome oxidase I gene was sequenced from larvae of 18 species of Oestridae causing obligate myiasis. Larvae belonged to the four Oestridae subfamilies (Cuterebrinae, Gasterophilinae, Hypodermatinae and Oestrinae), which are commonly found throughout the world. Analysis of both nucleotide and amino acid data was performed. Nucleotide sequences included 385 conserved sites and 303 variable sites; mean nucleotide variation between all species was 18.1% and variation within each subfamily ranged from 5.3% to 13.34%. Intraspecific pairwise divergences ranged from 0.14% to 1.59%, and interspecific variation ranged from 0.7% to 27%. Of the 229 amino acids, 76 were variable (60 of which were phylogenetically informative), with some highly conserved residues identified within each subfamily. Phylogenetic analysis showed a strong divergence among the four subfamilies, concordant with classical taxonomy based on morphological and biological features. This study provides the first molecular data set for myiasis‐causing Oestridae species, providing an essential database for the molecular identification of these parasites and the assessment of phylogenetic relationships within family Oestridae.</description><subject>amino acid sequences</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>bot flies</subject><subject>Codon - genetics</subject><subject>Cytochrome oxidase I</subject><subject>cytochrome-c oxidase</subject><subject>Diptera - classification</subject><subject>Diptera - enzymology</subject><subject>Diptera - genetics</subject><subject>DNA - genetics</subject><subject>DNA - isolation & purification</subject><subject>DNA Primers</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Genes</subject><subject>genetic variation</subject><subject>identification</subject><subject>insect genetics</subject><subject>Larva</subject><subject>Mitochondria - enzymology</subject><subject>Mitochondria - genetics</subject><subject>mitochondrial DNA</subject><subject>molecular sequence data</subject><subject>molecular systematics</subject><subject>myiasis</subject><subject>Myiasis - veterinary</subject><subject>nucleotide sequences</subject><subject>Oestridae</subject><subject>pest identification</subject><subject>phylogenesis</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Polymorphism, Genetic</subject><subject>sequence alignment</subject><subject>structural genes</subject><issn>0269-283X</issn><issn>1365-2915</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1u1DAURiMEokPhFcArdgnXduzYEhs0KqVSSxelLTvLSW5mPCTjwU7UGZ6ehIzKsl3573zftXSShFDIKOTy0yajXIqUaSoyBsAzgDxn2f5Fsnh8eJksgEmdMsV_niRvYtwA0EIz9jo5oUznFKhcJA9XvsVqaG0g1doGW_UY3B_bO78lviH9Gknnel-t_bYOzrakOkyn4Dskfu9qG5FckBVuccKvMfZhvEQSd1g5jKSyQ3TbFfFl61a2H9sOzkYX3yavGttGfHdcT5Pbr2c_lt_Sy-vzi-WXy7QSgrGUsYIpy3NAVULRoOa5krqRrFFK1jnKkiHLrW0ARF5apLUQpUZdCNFgwXN-mnyce3fB_x7G75nOxQrb1m7RD9EUXAJXUj0JUqUFCMlHUM1gFXyMARuzC66z4WAomMmO2ZhJgpkkmMmO-WfH7Mfo--OMoeyw_h886hiBzzPw4Fo8PLvYXN2djZsxns5xF3vcP8Zt-GVkwQth7r-fm3vGxN3yZmn0yH-Y-cZ6Y1fBRXN7w4ByoMBBKc3_Aq2Lt4w</recordid><startdate>200309</startdate><enddate>200309</enddate><creator>Otranto, D</creator><creator>Traversa, D</creator><creator>Guida, B</creator><creator>Tarsitano, E</creator><creator>Fiorente, P</creator><creator>Stevens, J.R</creator><general>Blackwell Science Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SS</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200309</creationdate><title>Molecular characterization of the mitochondrial cytochrome oxidase I gene of Oestridae species causing obligate myiasis</title><author>Otranto, D ; Traversa, D ; Guida, B ; Tarsitano, E ; Fiorente, P ; Stevens, J.R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5522-22728a340e8b07fe934869f62f886d4e6b2e24aaf0054bae1d55b9e9755fe7343</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>amino acid sequences</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>bot flies</topic><topic>Codon - genetics</topic><topic>Cytochrome oxidase I</topic><topic>cytochrome-c oxidase</topic><topic>Diptera - classification</topic><topic>Diptera - enzymology</topic><topic>Diptera - genetics</topic><topic>DNA - genetics</topic><topic>DNA - isolation & purification</topic><topic>DNA Primers</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Genes</topic><topic>genetic variation</topic><topic>identification</topic><topic>insect genetics</topic><topic>Larva</topic><topic>Mitochondria - enzymology</topic><topic>Mitochondria - genetics</topic><topic>mitochondrial DNA</topic><topic>molecular sequence data</topic><topic>molecular systematics</topic><topic>myiasis</topic><topic>Myiasis - veterinary</topic><topic>nucleotide sequences</topic><topic>Oestridae</topic><topic>pest identification</topic><topic>phylogenesis</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Polymorphism, Genetic</topic><topic>sequence alignment</topic><topic>structural genes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Otranto, D</creatorcontrib><creatorcontrib>Traversa, D</creatorcontrib><creatorcontrib>Guida, B</creatorcontrib><creatorcontrib>Tarsitano, E</creatorcontrib><creatorcontrib>Fiorente, P</creatorcontrib><creatorcontrib>Stevens, J.R</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Medical and veterinary entomology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Otranto, D</au><au>Traversa, D</au><au>Guida, B</au><au>Tarsitano, E</au><au>Fiorente, P</au><au>Stevens, J.R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular characterization of the mitochondrial cytochrome oxidase I gene of Oestridae species causing obligate myiasis</atitle><jtitle>Medical and veterinary entomology</jtitle><addtitle>Med Vet Entomol</addtitle><date>2003-09</date><risdate>2003</risdate><volume>17</volume><issue>3</issue><spage>307</spage><epage>315</epage><pages>307-315</pages><issn>0269-283X</issn><eissn>1365-2915</eissn><abstract>. A 688‐bp region of the mitochondrial cytochrome oxidase I gene was sequenced from larvae of 18 species of Oestridae causing obligate myiasis. Larvae belonged to the four Oestridae subfamilies (Cuterebrinae, Gasterophilinae, Hypodermatinae and Oestrinae), which are commonly found throughout the world. Analysis of both nucleotide and amino acid data was performed. Nucleotide sequences included 385 conserved sites and 303 variable sites; mean nucleotide variation between all species was 18.1% and variation within each subfamily ranged from 5.3% to 13.34%. Intraspecific pairwise divergences ranged from 0.14% to 1.59%, and interspecific variation ranged from 0.7% to 27%. Of the 229 amino acids, 76 were variable (60 of which were phylogenetically informative), with some highly conserved residues identified within each subfamily. Phylogenetic analysis showed a strong divergence among the four subfamilies, concordant with classical taxonomy based on morphological and biological features. This study provides the first molecular data set for myiasis‐causing Oestridae species, providing an essential database for the molecular identification of these parasites and the assessment of phylogenetic relationships within family Oestridae.</abstract><cop>Oxford, UK</cop><pub>Blackwell Science Ltd</pub><pmid>12941016</pmid><doi>10.1046/j.1365-2915.2003.00442.x</doi><tpages>9</tpages></addata></record> |
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subjects | amino acid sequences Animals Base Sequence bot flies Codon - genetics Cytochrome oxidase I cytochrome-c oxidase Diptera - classification Diptera - enzymology Diptera - genetics DNA - genetics DNA - isolation & purification DNA Primers Electron Transport Complex IV - genetics Genes genetic variation identification insect genetics Larva Mitochondria - enzymology Mitochondria - genetics mitochondrial DNA molecular sequence data molecular systematics myiasis Myiasis - veterinary nucleotide sequences Oestridae pest identification phylogenesis Phylogeny Polymerase Chain Reaction - methods Polymorphism, Genetic sequence alignment structural genes |
title | Molecular characterization of the mitochondrial cytochrome oxidase I gene of Oestridae species causing obligate myiasis |
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