Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics
The Cladosporium herbarum complex comprises five species for which Davidiella teleomorphs are known. Cladosporium herbarum s. str. (D. tassiana), C. macrocarpum (D. macrocarpa) and C. bruhnei (D. allicina) are distinguishable by having conidia of different width, and by teleomorph characters. Davidi...
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| Veröffentlicht in: | Studies in mycology 2007, Vol.58 (1), p.105-156 |
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| creator | Schubert, K Groenewald, J.Z Braun, U Dijksterhuis, J Starink, M Hill, C.F Zalar, P Hoog, G.S. de Crous, P.W |
| description | The Cladosporium herbarum complex comprises five species for which Davidiella teleomorphs are known. Cladosporium herbarum s. str. (D. tassiana), C. macrocarpum (D. macrocarpa) and C. bruhnei (D. allicina) are distinguishable by having conidia of different width, and by teleomorph characters. Davidiella variabile is introduced as teleomorph of C. variabile, a homothallic species occurring on Spinacia, and D. macrospora is known to be the teleomorph of C. iridis on Iris spp. The C. herbarum complex combines low molecular distance with a high degree of clonal or inbreeding diversity. Entities differ from each other by multilocus sequence data and by phenetic differences, and thus can be interpreted to represent individual taxa. Isolates of the C. herbarum complex that were formerly associated with opportunistic human infections, cluster with C. bruhnei. Several species are newly described from hypersaline water, namely C. ramotenellum, C. tenellum, C. subinflatum, and C. herbaroides. Cladosporium pseudiridis collected from Iris sp. in New Zealand, is also a member of this species complex and shown to be distinct from C. iridis that occurs on this host elsewhere in the world. A further new species from New Zealand is C. sinuosum on Fuchsia excorticata. Cladosporium antarcticum is newly described from a lichen, Caloplaca regalis, collected in Antarctica, and C. subtilissimum from grape berries in the U.S.A., while the new combination C. ossifragi, the oldest valid name of the Cladosporium known from Narthecium in Europe, is proposed. Standard protocols and media are herewith proposed to facilitate future morphological examination of Cladosporium spp. in culture, and neotypes or epitypes are proposed for all species treated.
Taxonomic novelties:Cladosporium antarcticum K. Schub., Crous & U. Braun, sp. nov., C. herbaroides K. Schub., Zalar, Crous & U. Braun, sp. nov., C. ossifragi (Rostr.) U. Braun & K. Schub., comb. nov., C. pseudiridis K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. ramotenellum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. sinuosum K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. subinflatum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. subtilissimum K. Schub., Dugan, Crous& U. Braun, sp. nov., C. tenellum K. Schub., Zalar, Crous & U. Braun sp. nov., Davidiella macrocarpa Crous, K. Schub. & U. Braun, sp. nov., D. variabile Crous, K. Schub. & U. Braun, sp. nov. |
| doi_str_mv | 10.3114/sim.2007.58.05 |
| format | Article |
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Taxonomic novelties:Cladosporium antarcticum K. Schub., Crous & U. Braun, sp. nov., C. herbaroides K. Schub., Zalar, Crous & U. Braun, sp. nov., C. ossifragi (Rostr.) U. Braun & K. Schub., comb. nov., C. pseudiridis K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. ramotenellum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. sinuosum K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. subinflatum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. subtilissimum K. Schub., Dugan, Crous& U. Braun, sp. nov., C. tenellum K. Schub., Zalar, Crous & U. Braun sp. nov., Davidiella macrocarpa Crous, K. Schub. & U. Braun, sp. nov., D. variabile Crous, K. Schub. & U. Braun, sp. nov.]]></description><identifier>ISSN: 0166-0616</identifier><identifier>EISSN: 1872-9797</identifier><identifier>DOI: 10.3114/sim.2007.58.05</identifier><identifier>PMID: 18490998</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>anamorphs ; Clonality ; Davidiella ; genera ; Homothallism ; inference ; leaf-spot ; loci ; multilocus genotype data ; mycosphaerella ; New Species ; Phylogeny ; Recombination ; sensu-lato ; sequence ; Taxonomy</subject><ispartof>Studies in mycology, 2007, Vol.58 (1), p.105-156</ispartof><rights>2007 CBS-KNAW Fungal Biodiversity Centre</rights><rights>Copyright © 2007 CBS Fungal Biodiversity Centre</rights><rights>Wageningen University & Research</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5351-b45061af6eec1c2483798c501efc00ab28e1cf8e934f25435cd75081d8fdfb523</citedby><cites>FETCH-LOGICAL-c5351-b45061af6eec1c2483798c501efc00ab28e1cf8e934f25435cd75081d8fdfb523</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2104742/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2104742/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,4024,27923,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18490998$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schubert, K</creatorcontrib><creatorcontrib>Groenewald, J.Z</creatorcontrib><creatorcontrib>Braun, U</creatorcontrib><creatorcontrib>Dijksterhuis, J</creatorcontrib><creatorcontrib>Starink, M</creatorcontrib><creatorcontrib>Hill, C.F</creatorcontrib><creatorcontrib>Zalar, P</creatorcontrib><creatorcontrib>Hoog, G.S. de</creatorcontrib><creatorcontrib>Crous, P.W</creatorcontrib><title>Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics</title><title>Studies in mycology</title><addtitle>Stud Mycol</addtitle><description><![CDATA[The Cladosporium herbarum complex comprises five species for which Davidiella teleomorphs are known. Cladosporium herbarum s. str. (D. tassiana), C. macrocarpum (D. macrocarpa) and C. bruhnei (D. allicina) are distinguishable by having conidia of different width, and by teleomorph characters. Davidiella variabile is introduced as teleomorph of C. variabile, a homothallic species occurring on Spinacia, and D. macrospora is known to be the teleomorph of C. iridis on Iris spp. The C. herbarum complex combines low molecular distance with a high degree of clonal or inbreeding diversity. Entities differ from each other by multilocus sequence data and by phenetic differences, and thus can be interpreted to represent individual taxa. Isolates of the C. herbarum complex that were formerly associated with opportunistic human infections, cluster with C. bruhnei. Several species are newly described from hypersaline water, namely C. ramotenellum, C. tenellum, C. subinflatum, and C. herbaroides. Cladosporium pseudiridis collected from Iris sp. in New Zealand, is also a member of this species complex and shown to be distinct from C. iridis that occurs on this host elsewhere in the world. A further new species from New Zealand is C. sinuosum on Fuchsia excorticata. Cladosporium antarcticum is newly described from a lichen, Caloplaca regalis, collected in Antarctica, and C. subtilissimum from grape berries in the U.S.A., while the new combination C. ossifragi, the oldest valid name of the Cladosporium known from Narthecium in Europe, is proposed. Standard protocols and media are herewith proposed to facilitate future morphological examination of Cladosporium spp. in culture, and neotypes or epitypes are proposed for all species treated.
Taxonomic novelties:Cladosporium antarcticum K. Schub., Crous & U. Braun, sp. nov., C. herbaroides K. Schub., Zalar, Crous & U. Braun, sp. nov., C. ossifragi (Rostr.) U. Braun & K. Schub., comb. nov., C. pseudiridis K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. ramotenellum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. sinuosum K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. subinflatum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. subtilissimum K. Schub., Dugan, Crous& U. Braun, sp. nov., C. tenellum K. Schub., Zalar, Crous & U. Braun sp. nov., Davidiella macrocarpa Crous, K. Schub. & U. Braun, sp. nov., D. variabile Crous, K. Schub. & U. Braun, sp. nov.]]></description><subject>anamorphs</subject><subject>Clonality</subject><subject>Davidiella</subject><subject>genera</subject><subject>Homothallism</subject><subject>inference</subject><subject>leaf-spot</subject><subject>loci</subject><subject>multilocus genotype data</subject><subject>mycosphaerella</subject><subject>New Species</subject><subject>Phylogeny</subject><subject>Recombination</subject><subject>sensu-lato</subject><subject>sequence</subject><subject>Taxonomy</subject><issn>0166-0616</issn><issn>1872-9797</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><recordid>eNp1UkuP0zAQjhCILQtXbiBfECBti53EjcMBAeUpVXCBs-U4k2ZWid213Wb7V_i1OE3Fsof1IbY832P8ZZLkKaOLjLH8jcd-kVJaLLhYUH4vmTFRpPOyKIv7yYyy5XJOl2x5ljzy_pJSnguRPUzOmMhLWpZilvz5iLbGPTiP4UDQkNACWXWqtn5rHe560oKrlIsHbfttB9fk1Se1xxqh65QGBRdkpbYmiqgO_OsLMmBoiQ_K1MrV6FVAa4htSA-htbUnjXW3DYK6tsb2BxIpJMpsjPUBtX-cPGhU5-HJaT9Pfn_5_Gv1bb7--fX76sN6rnnG2bzKeXyiapYAmuk0F1lRCs0pg0ZTqqpUANONgDLLm5TnGdd1walgtWjqpuJpdp68nXQHtQGDJn6kUU6jl1ah7LByyh3ksHPSdOO23VVeZlyUBYvkdxM5XvZQazDBqU5uHfYjaRS4XTHYyo3dy5TRvMhH95cnAWevduCD7NHrMVwDdudlkeWpWBbHPhcTUjvrvYPmnwujchwGGYdBjsMguZCUR8Lz_3u7gZ_-fgS8nwDHRwclL-3OmZi1HJoKb-TocY2i02JSuTAeRokXk0SLm3ZAB9L3quuiYyqHYYgcFtsbe3k24Rplpdq4GO6PdUpZStOcHWO4q04FL_JYF1Md4iTsEZz0GsFoqKOnDrK2eFcMfwE8Ovy2</recordid><startdate>2007</startdate><enddate>2007</enddate><creator>Schubert, K</creator><creator>Groenewald, J.Z</creator><creator>Braun, U</creator><creator>Dijksterhuis, J</creator><creator>Starink, M</creator><creator>Hill, C.F</creator><creator>Zalar, P</creator><creator>Hoog, G.S. de</creator><creator>Crous, P.W</creator><general>Elsevier B.V</general><general>CBS Fungal Biodiversity Centre</general><general>Westerdijk Fungal Biodiversity Institute</general><scope>6I.</scope><scope>AAFTH</scope><scope>FBQ</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>QVL</scope></search><sort><creationdate>2007</creationdate><title>Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics</title><author>Schubert, K ; Groenewald, J.Z ; Braun, U ; Dijksterhuis, J ; Starink, M ; Hill, C.F ; Zalar, P ; Hoog, G.S. de ; Crous, P.W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5351-b45061af6eec1c2483798c501efc00ab28e1cf8e934f25435cd75081d8fdfb523</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>anamorphs</topic><topic>Clonality</topic><topic>Davidiella</topic><topic>genera</topic><topic>Homothallism</topic><topic>inference</topic><topic>leaf-spot</topic><topic>loci</topic><topic>multilocus genotype data</topic><topic>mycosphaerella</topic><topic>New Species</topic><topic>Phylogeny</topic><topic>Recombination</topic><topic>sensu-lato</topic><topic>sequence</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schubert, K</creatorcontrib><creatorcontrib>Groenewald, J.Z</creatorcontrib><creatorcontrib>Braun, U</creatorcontrib><creatorcontrib>Dijksterhuis, J</creatorcontrib><creatorcontrib>Starink, M</creatorcontrib><creatorcontrib>Hill, C.F</creatorcontrib><creatorcontrib>Zalar, P</creatorcontrib><creatorcontrib>Hoog, G.S. de</creatorcontrib><creatorcontrib>Crous, P.W</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>AGRIS</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>NARCIS:Publications</collection><jtitle>Studies in mycology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schubert, K</au><au>Groenewald, J.Z</au><au>Braun, U</au><au>Dijksterhuis, J</au><au>Starink, M</au><au>Hill, C.F</au><au>Zalar, P</au><au>Hoog, G.S. de</au><au>Crous, P.W</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics</atitle><jtitle>Studies in mycology</jtitle><addtitle>Stud Mycol</addtitle><date>2007</date><risdate>2007</risdate><volume>58</volume><issue>1</issue><spage>105</spage><epage>156</epage><pages>105-156</pages><issn>0166-0616</issn><eissn>1872-9797</eissn><abstract><![CDATA[The Cladosporium herbarum complex comprises five species for which Davidiella teleomorphs are known. Cladosporium herbarum s. str. (D. tassiana), C. macrocarpum (D. macrocarpa) and C. bruhnei (D. allicina) are distinguishable by having conidia of different width, and by teleomorph characters. Davidiella variabile is introduced as teleomorph of C. variabile, a homothallic species occurring on Spinacia, and D. macrospora is known to be the teleomorph of C. iridis on Iris spp. The C. herbarum complex combines low molecular distance with a high degree of clonal or inbreeding diversity. Entities differ from each other by multilocus sequence data and by phenetic differences, and thus can be interpreted to represent individual taxa. Isolates of the C. herbarum complex that were formerly associated with opportunistic human infections, cluster with C. bruhnei. Several species are newly described from hypersaline water, namely C. ramotenellum, C. tenellum, C. subinflatum, and C. herbaroides. Cladosporium pseudiridis collected from Iris sp. in New Zealand, is also a member of this species complex and shown to be distinct from C. iridis that occurs on this host elsewhere in the world. A further new species from New Zealand is C. sinuosum on Fuchsia excorticata. Cladosporium antarcticum is newly described from a lichen, Caloplaca regalis, collected in Antarctica, and C. subtilissimum from grape berries in the U.S.A., while the new combination C. ossifragi, the oldest valid name of the Cladosporium known from Narthecium in Europe, is proposed. Standard protocols and media are herewith proposed to facilitate future morphological examination of Cladosporium spp. in culture, and neotypes or epitypes are proposed for all species treated.
Taxonomic novelties:Cladosporium antarcticum K. Schub., Crous & U. Braun, sp. nov., C. herbaroides K. Schub., Zalar, Crous & U. Braun, sp. nov., C. ossifragi (Rostr.) U. Braun & K. Schub., comb. nov., C. pseudiridis K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. ramotenellum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. sinuosum K. Schub., C.F. Hill, Crous& U. Braun, sp. nov., C. subinflatum K. Schub., Zalar, Crous& U. Braun, sp. nov., C. subtilissimum K. Schub., Dugan, Crous& U. Braun, sp. nov., C. tenellum K. Schub., Zalar, Crous & U. Braun sp. nov., Davidiella macrocarpa Crous, K. Schub. & U. Braun, sp. nov., D. variabile Crous, K. Schub. & U. Braun, sp. nov.]]></abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>18490998</pmid><doi>10.3114/sim.2007.58.05</doi><tpages>52</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | anamorphs Clonality Davidiella genera Homothallism inference leaf-spot loci multilocus genotype data mycosphaerella New Species Phylogeny Recombination sensu-lato sequence Taxonomy |
| title | Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics |
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