'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change
Approximately 20 000 years ago the last glacial maximum (LGM) radically altered the distributions of many Northern Hemisphere terrestrial organisms. Fewer studies describing the biogeographic responses of marine species to the LGM have been conducted, but existing genetic data from coastal marine sp...
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description | Approximately 20 000 years ago the last glacial maximum (LGM) radically altered the distributions of many Northern Hemisphere terrestrial organisms. Fewer studies describing the biogeographic responses of marine species to the LGM have been conducted, but existing genetic data from coastal marine species indicate that fewer taxa show clear signatures of post-LGM recolonization. We have assembled a mitochondrial DNA (mtDNA) data set for 14 co-distributed northeastern Pacific rocky-shore species from four phyla by combining new sequences from ten species with previously published sequences from eight species. Nuclear sequences from four species were retrieved from GenBank, plus we gathered new elongation factor 1-α sequences from the barnacle Balanus glandula. Results from demographic analyses of mtDNA for five (36%) species (Evasterias troschelii, Pisaster ochraceus, Littorina sitkana, L. scutulata, Xiphister mucosus) were consistent with large population expansions occurring near the LGM, a pattern expected if these species recently recolonized the region. However, seven (50%) species (Mytilus trossulus, M. californianus, B. glandula, S. cariosus, Patiria miniata, Katharina tunicata, X. atropurpureus) exhibited histories consistent with long-term stability in effective population size, a pattern indicative of regional persistence during the LGM. Two species of Nucella with significant mtDNA genetic structure showed spatially variable demographic histories. Multilocus analyses for five species were largely consistent with mtDNA: the majority of multilocus interpopulation divergence times significantly exceeded the LGM. Our results indicate that the LGM did not extirpate the majority of species in the northeastern Pacific; instead, regional persistence during the LGM appears a common biogeographic history for rocky-shore organisms in this region. |
doi_str_mv | 10.1111/j.1365-294X.2009.04417.x |
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Nicole</creator><creatorcontrib>Marko, Peter B ; Hoffman, Jessica M ; Emme, Sandra A ; McGovern, Tamara M ; Keever, Carson C ; Cox, L. Nicole</creatorcontrib><description>Approximately 20 000 years ago the last glacial maximum (LGM) radically altered the distributions of many Northern Hemisphere terrestrial organisms. Fewer studies describing the biogeographic responses of marine species to the LGM have been conducted, but existing genetic data from coastal marine species indicate that fewer taxa show clear signatures of post-LGM recolonization. We have assembled a mitochondrial DNA (mtDNA) data set for 14 co-distributed northeastern Pacific rocky-shore species from four phyla by combining new sequences from ten species with previously published sequences from eight species. Nuclear sequences from four species were retrieved from GenBank, plus we gathered new elongation factor 1-α sequences from the barnacle Balanus glandula. Results from demographic analyses of mtDNA for five (36%) species (Evasterias troschelii, Pisaster ochraceus, Littorina sitkana, L. scutulata, Xiphister mucosus) were consistent with large population expansions occurring near the LGM, a pattern expected if these species recently recolonized the region. However, seven (50%) species (Mytilus trossulus, M. californianus, B. glandula, S. cariosus, Patiria miniata, Katharina tunicata, X. atropurpureus) exhibited histories consistent with long-term stability in effective population size, a pattern indicative of regional persistence during the LGM. Two species of Nucella with significant mtDNA genetic structure showed spatially variable demographic histories. Multilocus analyses for five species were largely consistent with mtDNA: the majority of multilocus interpopulation divergence times significantly exceeded the LGM. Our results indicate that the LGM did not extirpate the majority of species in the northeastern Pacific; instead, regional persistence during the LGM appears a common biogeographic history for rocky-shore organisms in this region.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/j.1365-294X.2009.04417.x</identifier><identifier>PMID: 20092033</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>Animal populations ; Animals ; Aquatic life ; Balanus glandula ; Bayes Theorem ; Bayesian demographic reconstruction ; Biogeography ; Cell Nucleus - genetics ; climate change ; Comparative Genomic Hybridization ; divergence times ; DNA, Mitochondrial - genetics ; Evasterias troschelii ; Evolution, Molecular ; Genetic structure ; Genetics ; Genetics, Population ; Geography ; Haplotypes ; Katharina tunicata ; Littorina sitkana ; marine invertebrates ; mismatch analysis ; mitochondria ; Mitochondrial DNA ; Models, Genetic ; Mytilus trossulus ; Nucella ; Patiria miniata ; Peptide Elongation Factor 1 - genetics ; Pisaster ochraceus ; Pleistocene ; population growth ; Population number ; post-glacial expansion ; Recolonization ; Sequence Analysis, DNA ; skyline plot ; Thoracica - genetics ; Xiphister mucosus</subject><ispartof>Molecular ecology, 2010, Vol.19 (1), p.146-169</ispartof><rights>2009 Blackwell Publishing Ltd</rights><rights>2010 Blackwell Publishing Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6917-77c3014e8b495befe79a3883dad1734103a5f94a36114936fdd045d1cd34efb53</citedby><cites>FETCH-LOGICAL-c6917-77c3014e8b495befe79a3883dad1734103a5f94a36114936fdd045d1cd34efb53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-294X.2009.04417.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-294X.2009.04417.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,4010,27900,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20092033$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Marko, Peter B</creatorcontrib><creatorcontrib>Hoffman, Jessica M</creatorcontrib><creatorcontrib>Emme, Sandra A</creatorcontrib><creatorcontrib>McGovern, Tamara M</creatorcontrib><creatorcontrib>Keever, Carson C</creatorcontrib><creatorcontrib>Cox, L. Nicole</creatorcontrib><title>'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Approximately 20 000 years ago the last glacial maximum (LGM) radically altered the distributions of many Northern Hemisphere terrestrial organisms. Fewer studies describing the biogeographic responses of marine species to the LGM have been conducted, but existing genetic data from coastal marine species indicate that fewer taxa show clear signatures of post-LGM recolonization. We have assembled a mitochondrial DNA (mtDNA) data set for 14 co-distributed northeastern Pacific rocky-shore species from four phyla by combining new sequences from ten species with previously published sequences from eight species. Nuclear sequences from four species were retrieved from GenBank, plus we gathered new elongation factor 1-α sequences from the barnacle Balanus glandula. Results from demographic analyses of mtDNA for five (36%) species (Evasterias troschelii, Pisaster ochraceus, Littorina sitkana, L. scutulata, Xiphister mucosus) were consistent with large population expansions occurring near the LGM, a pattern expected if these species recently recolonized the region. However, seven (50%) species (Mytilus trossulus, M. californianus, B. glandula, S. cariosus, Patiria miniata, Katharina tunicata, X. atropurpureus) exhibited histories consistent with long-term stability in effective population size, a pattern indicative of regional persistence during the LGM. Two species of Nucella with significant mtDNA genetic structure showed spatially variable demographic histories. Multilocus analyses for five species were largely consistent with mtDNA: the majority of multilocus interpopulation divergence times significantly exceeded the LGM. Our results indicate that the LGM did not extirpate the majority of species in the northeastern Pacific; instead, regional persistence during the LGM appears a common biogeographic history for rocky-shore organisms in this region.</description><subject>Animal populations</subject><subject>Animals</subject><subject>Aquatic life</subject><subject>Balanus glandula</subject><subject>Bayes Theorem</subject><subject>Bayesian demographic reconstruction</subject><subject>Biogeography</subject><subject>Cell Nucleus - genetics</subject><subject>climate change</subject><subject>Comparative Genomic Hybridization</subject><subject>divergence times</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Evasterias troschelii</subject><subject>Evolution, Molecular</subject><subject>Genetic structure</subject><subject>Genetics</subject><subject>Genetics, Population</subject><subject>Geography</subject><subject>Haplotypes</subject><subject>Katharina tunicata</subject><subject>Littorina sitkana</subject><subject>marine invertebrates</subject><subject>mismatch analysis</subject><subject>mitochondria</subject><subject>Mitochondrial DNA</subject><subject>Models, Genetic</subject><subject>Mytilus trossulus</subject><subject>Nucella</subject><subject>Patiria miniata</subject><subject>Peptide Elongation Factor 1 - genetics</subject><subject>Pisaster ochraceus</subject><subject>Pleistocene</subject><subject>population growth</subject><subject>Population number</subject><subject>post-glacial expansion</subject><subject>Recolonization</subject><subject>Sequence Analysis, DNA</subject><subject>skyline plot</subject><subject>Thoracica - genetics</subject><subject>Xiphister mucosus</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkk9v0zAYhyMEYmXwFcDiQE8JdvwvRuKAorIhBgyxiUkcLCd53aZL42I3ov32OGT0wAHwxa_k5_eTXj1OEkRwRuJ5uc4IFTzNFbvJcoxVhhkjMtvfS2bHh_vJDCuRpwQX9CR5FMIaY0Jzzh8mJ2Mmx5TOkm_zxX5r-tC6Pi1dv_Om3sV5jjaugQ45iy47aMPO1dADqlq3BLf0Zrs6vELe1bcHFFbOQ0BhsBY8MiiAQfXK9Et4nDywpgvw5O4-Ta7fLq7K8_Ti09m78s1FWgtFZCplTTFhUFRM8QosSGVoUdDGNERSRjA13CpmqCCEKSps02DGG1I3lIGtOD1N5lPv1rvvA4Sd3rShhq4zPbgh6FiSM0o5i-SLv5I5yQWhaqx8_ge4doPv4xaRwUIWkhX_hDhRIkLFBNXeheDB6q1vN8YfNMF6lKnXenSmR2d6FKN_ydT7GH161z9UG2iOwd_2IvB6An60HRz-u1h_WJTjFPPplI-CYX_MG3-rhaSS668fz_TnK3n5_kad6zLyzybeGqfN0rdBX3_J46_CROaMc0F_Au1dxCI</recordid><startdate>2010</startdate><enddate>2010</enddate><creator>Marko, Peter B</creator><creator>Hoffman, Jessica M</creator><creator>Emme, Sandra A</creator><creator>McGovern, Tamara M</creator><creator>Keever, Carson C</creator><creator>Cox, L. Nicole</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7ST</scope><scope>7TN</scope><scope>7U6</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>7X8</scope></search><sort><creationdate>2010</creationdate><title>'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change</title><author>Marko, Peter B ; Hoffman, Jessica M ; Emme, Sandra A ; McGovern, Tamara M ; Keever, Carson C ; Cox, L. Nicole</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6917-77c3014e8b495befe79a3883dad1734103a5f94a36114936fdd045d1cd34efb53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Animal populations</topic><topic>Animals</topic><topic>Aquatic life</topic><topic>Balanus glandula</topic><topic>Bayes Theorem</topic><topic>Bayesian demographic reconstruction</topic><topic>Biogeography</topic><topic>Cell Nucleus - genetics</topic><topic>climate change</topic><topic>Comparative Genomic Hybridization</topic><topic>divergence times</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Evasterias troschelii</topic><topic>Evolution, Molecular</topic><topic>Genetic structure</topic><topic>Genetics</topic><topic>Genetics, Population</topic><topic>Geography</topic><topic>Haplotypes</topic><topic>Katharina tunicata</topic><topic>Littorina sitkana</topic><topic>marine invertebrates</topic><topic>mismatch analysis</topic><topic>mitochondria</topic><topic>Mitochondrial DNA</topic><topic>Models, Genetic</topic><topic>Mytilus trossulus</topic><topic>Nucella</topic><topic>Patiria miniata</topic><topic>Peptide Elongation Factor 1 - genetics</topic><topic>Pisaster ochraceus</topic><topic>Pleistocene</topic><topic>population growth</topic><topic>Population number</topic><topic>post-glacial expansion</topic><topic>Recolonization</topic><topic>Sequence Analysis, DNA</topic><topic>skyline plot</topic><topic>Thoracica - genetics</topic><topic>Xiphister mucosus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Marko, Peter B</creatorcontrib><creatorcontrib>Hoffman, Jessica M</creatorcontrib><creatorcontrib>Emme, Sandra A</creatorcontrib><creatorcontrib>McGovern, Tamara M</creatorcontrib><creatorcontrib>Keever, Carson C</creatorcontrib><creatorcontrib>Cox, L. 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Nicole</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2010</date><risdate>2010</risdate><volume>19</volume><issue>1</issue><spage>146</spage><epage>169</epage><pages>146-169</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Approximately 20 000 years ago the last glacial maximum (LGM) radically altered the distributions of many Northern Hemisphere terrestrial organisms. Fewer studies describing the biogeographic responses of marine species to the LGM have been conducted, but existing genetic data from coastal marine species indicate that fewer taxa show clear signatures of post-LGM recolonization. We have assembled a mitochondrial DNA (mtDNA) data set for 14 co-distributed northeastern Pacific rocky-shore species from four phyla by combining new sequences from ten species with previously published sequences from eight species. Nuclear sequences from four species were retrieved from GenBank, plus we gathered new elongation factor 1-α sequences from the barnacle Balanus glandula. Results from demographic analyses of mtDNA for five (36%) species (Evasterias troschelii, Pisaster ochraceus, Littorina sitkana, L. scutulata, Xiphister mucosus) were consistent with large population expansions occurring near the LGM, a pattern expected if these species recently recolonized the region. However, seven (50%) species (Mytilus trossulus, M. californianus, B. glandula, S. cariosus, Patiria miniata, Katharina tunicata, X. atropurpureus) exhibited histories consistent with long-term stability in effective population size, a pattern indicative of regional persistence during the LGM. Two species of Nucella with significant mtDNA genetic structure showed spatially variable demographic histories. Multilocus analyses for five species were largely consistent with mtDNA: the majority of multilocus interpopulation divergence times significantly exceeded the LGM. Our results indicate that the LGM did not extirpate the majority of species in the northeastern Pacific; instead, regional persistence during the LGM appears a common biogeographic history for rocky-shore organisms in this region.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>20092033</pmid><doi>10.1111/j.1365-294X.2009.04417.x</doi><tpages>24</tpages></addata></record> |
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subjects | Animal populations Animals Aquatic life Balanus glandula Bayes Theorem Bayesian demographic reconstruction Biogeography Cell Nucleus - genetics climate change Comparative Genomic Hybridization divergence times DNA, Mitochondrial - genetics Evasterias troschelii Evolution, Molecular Genetic structure Genetics Genetics, Population Geography Haplotypes Katharina tunicata Littorina sitkana marine invertebrates mismatch analysis mitochondria Mitochondrial DNA Models, Genetic Mytilus trossulus Nucella Patiria miniata Peptide Elongation Factor 1 - genetics Pisaster ochraceus Pleistocene population growth Population number post-glacial expansion Recolonization Sequence Analysis, DNA skyline plot Thoracica - genetics Xiphister mucosus |
title | 'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change |
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