Theoretical and Experimental Study of Valence-Shell Ionization Spectra of Guanine
The full valence-shell ionization spectra of the four most stable guanine tautomers were studied theoretically. The third-order algebraic-diagrammatic construction (ADC(3)) method for the one-particle Green’s function was used to calculate the energies and relative intensities of the vertical ioniza...
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Veröffentlicht in: | The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Molecules, spectroscopy, kinetics, environment, & general theory, 2009-12, Vol.113 (52), p.15142-15149 |
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creator | Zaytseva, Irina L Trofimov, Alexander B Schirmer, Jochen Plekan, Oksana Feyer, Vitaliy Richter, Robert Coreno, Marcello Prince, Kevin C |
description | The full valence-shell ionization spectra of the four most stable guanine tautomers were studied theoretically. The third-order algebraic-diagrammatic construction (ADC(3)) method for the one-particle Green’s function was used to calculate the energies and relative intensities of the vertical ionization transitions. For low-lying transitions, the influence of planar and nonplanar guanine configurations on the ionization energies, as well as the convergence of the results with respect to basis set was studied at the level of the outer-valence Green’s function (OVGF) approximation scheme. The results of the calculations were used to interpret recent synchrotron radiation valence-shell photoionization spectra of guanine in the gas phase under thermal equilibrium conditions. The photoelectron spectrum was modeled by summing individual tautomer spectra weighted by Boltzmann population ratios (BPR) of tautomers from our previous high-level ab initio thermochemical calculations. The theoretical spectra are in good agreement with the experimental results, providing assignments of most observed structures and offering insight into tautomerism of guanine in the gas phase. The first six molecular orbitals give rise to single-hole states with a binding energy of about 7−12 eV. At higher binding energy the spectral features are mainly due to satellite states. |
doi_str_mv | 10.1021/jp905299z |
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The third-order algebraic-diagrammatic construction (ADC(3)) method for the one-particle Green’s function was used to calculate the energies and relative intensities of the vertical ionization transitions. For low-lying transitions, the influence of planar and nonplanar guanine configurations on the ionization energies, as well as the convergence of the results with respect to basis set was studied at the level of the outer-valence Green’s function (OVGF) approximation scheme. The results of the calculations were used to interpret recent synchrotron radiation valence-shell photoionization spectra of guanine in the gas phase under thermal equilibrium conditions. The photoelectron spectrum was modeled by summing individual tautomer spectra weighted by Boltzmann population ratios (BPR) of tautomers from our previous high-level ab initio thermochemical calculations. The theoretical spectra are in good agreement with the experimental results, providing assignments of most observed structures and offering insight into tautomerism of guanine in the gas phase. The first six molecular orbitals give rise to single-hole states with a binding energy of about 7−12 eV. At higher binding energy the spectral features are mainly due to satellite states.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp905299z</identifier><identifier>PMID: 20028182</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Guanine - chemistry ; Isomerism ; Photoelectron Spectroscopy ; Quantum Theory ; Thermodynamics</subject><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2009-12, Vol.113 (52), p.15142-15149</ispartof><rights>Copyright © 2009 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a380t-f2743bff023fc4f053312fe22de1747f18324fbc79c4c53fd916efcc6ee163543</citedby><cites>FETCH-LOGICAL-a380t-f2743bff023fc4f053312fe22de1747f18324fbc79c4c53fd916efcc6ee163543</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jp905299z$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jp905299z$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,777,781,2752,27057,27905,27906,56719,56769</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20028182$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zaytseva, Irina L</creatorcontrib><creatorcontrib>Trofimov, Alexander B</creatorcontrib><creatorcontrib>Schirmer, Jochen</creatorcontrib><creatorcontrib>Plekan, Oksana</creatorcontrib><creatorcontrib>Feyer, Vitaliy</creatorcontrib><creatorcontrib>Richter, Robert</creatorcontrib><creatorcontrib>Coreno, Marcello</creatorcontrib><creatorcontrib>Prince, Kevin C</creatorcontrib><title>Theoretical and Experimental Study of Valence-Shell Ionization Spectra of Guanine</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>The full valence-shell ionization spectra of the four most stable guanine tautomers were studied theoretically. The third-order algebraic-diagrammatic construction (ADC(3)) method for the one-particle Green’s function was used to calculate the energies and relative intensities of the vertical ionization transitions. For low-lying transitions, the influence of planar and nonplanar guanine configurations on the ionization energies, as well as the convergence of the results with respect to basis set was studied at the level of the outer-valence Green’s function (OVGF) approximation scheme. The results of the calculations were used to interpret recent synchrotron radiation valence-shell photoionization spectra of guanine in the gas phase under thermal equilibrium conditions. The photoelectron spectrum was modeled by summing individual tautomer spectra weighted by Boltzmann population ratios (BPR) of tautomers from our previous high-level ab initio thermochemical calculations. The theoretical spectra are in good agreement with the experimental results, providing assignments of most observed structures and offering insight into tautomerism of guanine in the gas phase. The first six molecular orbitals give rise to single-hole states with a binding energy of about 7−12 eV. At higher binding energy the spectral features are mainly due to satellite states.</description><subject>Guanine - chemistry</subject><subject>Isomerism</subject><subject>Photoelectron Spectroscopy</subject><subject>Quantum Theory</subject><subject>Thermodynamics</subject><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0MtKAzEUBuAgiq3VhS8gsxFxMZrLZC5LKbUWCiJT3Q5p5oROmSZjkgHbpzeltStXOYSPn3N-hG4JfiKYkud1V2BOi2J3hoaEUxxzSvh5mHFexDxlxQBdObfGGBNGk0s0oBjTnOR0iD4WKzAWfCNFGwldR5OfDmyzAe3DR-n7ehsZFX2JFrSEuFxB20Yzo5ud8I3RUdmB9FbszbQXutFwjS6UaB3cHN8R-nydLMZv8fx9Ohu_zGPBcuxjRbOELZXClCmZKMwZI1QBpTWQLMkUycOqaimzQiaSM1UXJAUlZQpAUsYTNkIPh9zOmu8enK82jZNhPaHB9K7KWEKDzPIgHw9SWuOcBVV14UJhtxXB1b7A6lRgsHfH1H65gfok_xoL4P4AhHTV2vRWhyP_CfoF5JB3Vw</recordid><startdate>20091231</startdate><enddate>20091231</enddate><creator>Zaytseva, Irina L</creator><creator>Trofimov, Alexander B</creator><creator>Schirmer, Jochen</creator><creator>Plekan, Oksana</creator><creator>Feyer, Vitaliy</creator><creator>Richter, Robert</creator><creator>Coreno, Marcello</creator><creator>Prince, Kevin C</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20091231</creationdate><title>Theoretical and Experimental Study of Valence-Shell Ionization Spectra of Guanine</title><author>Zaytseva, Irina L ; Trofimov, Alexander B ; Schirmer, Jochen ; Plekan, Oksana ; Feyer, Vitaliy ; Richter, Robert ; Coreno, Marcello ; Prince, Kevin C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a380t-f2743bff023fc4f053312fe22de1747f18324fbc79c4c53fd916efcc6ee163543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Guanine - chemistry</topic><topic>Isomerism</topic><topic>Photoelectron Spectroscopy</topic><topic>Quantum Theory</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zaytseva, Irina L</creatorcontrib><creatorcontrib>Trofimov, Alexander B</creatorcontrib><creatorcontrib>Schirmer, Jochen</creatorcontrib><creatorcontrib>Plekan, Oksana</creatorcontrib><creatorcontrib>Feyer, Vitaliy</creatorcontrib><creatorcontrib>Richter, Robert</creatorcontrib><creatorcontrib>Coreno, Marcello</creatorcontrib><creatorcontrib>Prince, Kevin C</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zaytseva, Irina L</au><au>Trofimov, Alexander B</au><au>Schirmer, Jochen</au><au>Plekan, Oksana</au><au>Feyer, Vitaliy</au><au>Richter, Robert</au><au>Coreno, Marcello</au><au>Prince, Kevin C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Theoretical and Experimental Study of Valence-Shell Ionization Spectra of Guanine</atitle><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle><addtitle>J. Phys. Chem. A</addtitle><date>2009-12-31</date><risdate>2009</risdate><volume>113</volume><issue>52</issue><spage>15142</spage><epage>15149</epage><pages>15142-15149</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>The full valence-shell ionization spectra of the four most stable guanine tautomers were studied theoretically. The third-order algebraic-diagrammatic construction (ADC(3)) method for the one-particle Green’s function was used to calculate the energies and relative intensities of the vertical ionization transitions. For low-lying transitions, the influence of planar and nonplanar guanine configurations on the ionization energies, as well as the convergence of the results with respect to basis set was studied at the level of the outer-valence Green’s function (OVGF) approximation scheme. The results of the calculations were used to interpret recent synchrotron radiation valence-shell photoionization spectra of guanine in the gas phase under thermal equilibrium conditions. The photoelectron spectrum was modeled by summing individual tautomer spectra weighted by Boltzmann population ratios (BPR) of tautomers from our previous high-level ab initio thermochemical calculations. The theoretical spectra are in good agreement with the experimental results, providing assignments of most observed structures and offering insight into tautomerism of guanine in the gas phase. The first six molecular orbitals give rise to single-hole states with a binding energy of about 7−12 eV. At higher binding energy the spectral features are mainly due to satellite states.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>20028182</pmid><doi>10.1021/jp905299z</doi><tpages>8</tpages></addata></record> |
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subjects | Guanine - chemistry Isomerism Photoelectron Spectroscopy Quantum Theory Thermodynamics |
title | Theoretical and Experimental Study of Valence-Shell Ionization Spectra of Guanine |
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