Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes
The phylogenetic positions of the primary photosynthetic eukaryotes, or Archaeplastida (green plants, red algae, and glaucophytes) and the secondary photosynthetic chromalveolates, Haptophyta, vary depending on the data matrices used in the previous nuclear multigene phylogenetic studies. Here, we d...
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| Veröffentlicht in: | Molecular phylogenetics and evolution 2009-12, Vol.53 (3), p.872-880 |
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| container_title | Molecular phylogenetics and evolution |
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| creator | Nozaki, Hisayoshi Maruyama, Shinichiro Matsuzaki, Motomichi Nakada, Takashi Kato, Syou Misawa, Kazuharu |
| description | The phylogenetic positions of the primary photosynthetic eukaryotes, or Archaeplastida (green plants, red algae, and glaucophytes) and the secondary photosynthetic chromalveolates, Haptophyta, vary depending on the data matrices used in the previous nuclear multigene phylogenetic studies. Here, we deduced the phylogeny of three groups of Archaeplastida and Haptophyta on the basis of sequences of the multiple slowly evolving nuclear genes and reduced the gaps or missing data, especially in glaucophyte operational taxonomic units (OTUs). The present multigene phylogenetic analyses resolved that Haptophyta and two other groups of Chromalveolata, stramenopiles and Alveolata, form a monophyletic group that is sister to the green plants and that the glaucophytes and red algae are basal to the clade composed of green plants and Chromalveolata. The bootstrap values supporting these phylogenetic relationships increased with the exclusion of long-branched OTUs. The close relationship between green plants and Chromalveolata is further supported by the common replacement in two plastid-targeted genes. |
| doi_str_mv | 10.1016/j.ympev.2009.08.015 |
| format | Article |
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Here, we deduced the phylogeny of three groups of Archaeplastida and Haptophyta on the basis of sequences of the multiple slowly evolving nuclear genes and reduced the gaps or missing data, especially in glaucophyte operational taxonomic units (OTUs). The present multigene phylogenetic analyses resolved that Haptophyta and two other groups of Chromalveolata, stramenopiles and Alveolata, form a monophyletic group that is sister to the green plants and that the glaucophytes and red algae are basal to the clade composed of green plants and Chromalveolata. The bootstrap values supporting these phylogenetic relationships increased with the exclusion of long-branched OTUs. 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Here, we deduced the phylogeny of three groups of Archaeplastida and Haptophyta on the basis of sequences of the multiple slowly evolving nuclear genes and reduced the gaps or missing data, especially in glaucophyte operational taxonomic units (OTUs). The present multigene phylogenetic analyses resolved that Haptophyta and two other groups of Chromalveolata, stramenopiles and Alveolata, form a monophyletic group that is sister to the green plants and that the glaucophytes and red algae are basal to the clade composed of green plants and Chromalveolata. The bootstrap values supporting these phylogenetic relationships increased with the exclusion of long-branched OTUs. The close relationship between green plants and Chromalveolata is further supported by the common replacement in two plastid-targeted genes.</description><subject>Alveolata - classification</subject><subject>Alveolata - genetics</subject><subject>Archaeplastida</subject><subject>Bayes Theorem</subject><subject>Cell Nucleus - genetics</subject><subject>Chromalveolata</subject><subject>Eukaryote evolution</subject><subject>Evolution, Molecular</subject><subject>Glaucophyta</subject><subject>Green plants</subject><subject>Haptophyta</subject><subject>Likelihood Functions</subject><subject>Long branch attraction</subject><subject>Nuclear genes</subject><subject>Phylogeny</subject><subject>Plants - classification</subject><subject>Plants - genetics</subject><subject>Primary photosynthetic eukaryotes</subject><subject>Rhodophyta - classification</subject><subject>Rhodophyta - genetics</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Short branch</subject><subject>“Super” Plant Kingdom</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1u1DAQxy0EoqXwBEjIN4pEgh3HSXzgUK2gRarUHsrZcuzJrldOHGwnKK_BEzdhV-LGaWY0v_n8I_SekpwSWn055ks_wpwXhIicNDmh_AW6pETwTHDKXm4-51ktCLtAb2I8EkIpF_w1uqCiEk0tykv05_GwOL-HAZLVePTRJuuHiH2Hb52atB8PS1Kf8T4ADHh0akgRX98EfVCwRjFZoz5hNRh8p8Z0ovH17hB8r9wM3qm05SM2YCYNBndrBkfnf7sFw-zdbIc9HibtQAW87RHfoledchHene0V-vn929PuLrt_uP2xu7nPdFmUKTNtxbqWgC55YYBSXaqi4HWhG9Ux2lKgghvgou7KVjdlVzLRFRXjbUuqpiCKXaGPp75j8L8miEn2Nmpw643gpyhrVtKK14ysJDuROvgYA3RyDLZXYZGUyE0LeZR_tZCbFpI0ctVirfpw7j-1PZh_Nefnr8DXEwDrlbOFIKO2MKxfsgF0ksbb_w54Bnd7n0s</recordid><startdate>20091201</startdate><enddate>20091201</enddate><creator>Nozaki, Hisayoshi</creator><creator>Maruyama, Shinichiro</creator><creator>Matsuzaki, Motomichi</creator><creator>Nakada, Takashi</creator><creator>Kato, Syou</creator><creator>Misawa, Kazuharu</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20091201</creationdate><title>Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes</title><author>Nozaki, Hisayoshi ; Maruyama, Shinichiro ; Matsuzaki, Motomichi ; Nakada, Takashi ; Kato, Syou ; Misawa, Kazuharu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-db63fb0ec452de11c4a22572c8af31b1e195de597f4bc84f439f2635bb06820a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Alveolata - classification</topic><topic>Alveolata - genetics</topic><topic>Archaeplastida</topic><topic>Bayes Theorem</topic><topic>Cell Nucleus - genetics</topic><topic>Chromalveolata</topic><topic>Eukaryote evolution</topic><topic>Evolution, Molecular</topic><topic>Glaucophyta</topic><topic>Green plants</topic><topic>Haptophyta</topic><topic>Likelihood Functions</topic><topic>Long branch attraction</topic><topic>Nuclear genes</topic><topic>Phylogeny</topic><topic>Plants - classification</topic><topic>Plants - genetics</topic><topic>Primary photosynthetic eukaryotes</topic><topic>Rhodophyta - classification</topic><topic>Rhodophyta - genetics</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Short branch</topic><topic>“Super” Plant Kingdom</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nozaki, Hisayoshi</creatorcontrib><creatorcontrib>Maruyama, Shinichiro</creatorcontrib><creatorcontrib>Matsuzaki, Motomichi</creatorcontrib><creatorcontrib>Nakada, Takashi</creatorcontrib><creatorcontrib>Kato, Syou</creatorcontrib><creatorcontrib>Misawa, Kazuharu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nozaki, Hisayoshi</au><au>Maruyama, Shinichiro</au><au>Matsuzaki, Motomichi</au><au>Nakada, Takashi</au><au>Kato, Syou</au><au>Misawa, Kazuharu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2009-12-01</date><risdate>2009</risdate><volume>53</volume><issue>3</issue><spage>872</spage><epage>880</epage><pages>872-880</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>The phylogenetic positions of the primary photosynthetic eukaryotes, or Archaeplastida (green plants, red algae, and glaucophytes) and the secondary photosynthetic chromalveolates, Haptophyta, vary depending on the data matrices used in the previous nuclear multigene phylogenetic studies. Here, we deduced the phylogeny of three groups of Archaeplastida and Haptophyta on the basis of sequences of the multiple slowly evolving nuclear genes and reduced the gaps or missing data, especially in glaucophyte operational taxonomic units (OTUs). The present multigene phylogenetic analyses resolved that Haptophyta and two other groups of Chromalveolata, stramenopiles and Alveolata, form a monophyletic group that is sister to the green plants and that the glaucophytes and red algae are basal to the clade composed of green plants and Chromalveolata. The bootstrap values supporting these phylogenetic relationships increased with the exclusion of long-branched OTUs. The close relationship between green plants and Chromalveolata is further supported by the common replacement in two plastid-targeted genes.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>19698794</pmid><doi>10.1016/j.ympev.2009.08.015</doi><tpages>9</tpages></addata></record> |
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| subjects | Alveolata - classification Alveolata - genetics Archaeplastida Bayes Theorem Cell Nucleus - genetics Chromalveolata Eukaryote evolution Evolution, Molecular Glaucophyta Green plants Haptophyta Likelihood Functions Long branch attraction Nuclear genes Phylogeny Plants - classification Plants - genetics Primary photosynthetic eukaryotes Rhodophyta - classification Rhodophyta - genetics Sequence Alignment Sequence Analysis, DNA Short branch “Super” Plant Kingdom |
| title | Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes |
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