Roseovarius halotolerans sp. nov., isolated from deep seawater
1 Department of Microbiology and Biotechnology Research Institute, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea 2 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea 3...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2009-11, Vol.59 (11), p.2718-2723 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Oh, Yong-Sik Lim, Hayung-Joon Cha, In-Tae Im, Wan-Taek Yoo, Jae-Soo Kang, Ui Gum Rhee, Sung-Keun Roh, Dong-Hyun |
| description | 1 Department of Microbiology and Biotechnology Research Institute, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
2 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
3 School of Electrical and Computer Engineering, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
4 Yeongnam Agricultural Research Institute (NICS, RDA), Milyang 627-803, Republic of Korea
Correspondence Dong-Hyun Roh dhroh{at}chungbuk.ac.kr
A Gram-reaction-negative, non-motile, aerobic bacterium, designated HJ50 T , was isolated from deep seawater of the East Sea, South Korea. Cells were ovoid to rod-shaped (0.5–0.8 x 1.3–3.0 µm), often with unequal ends, suggesting a budding mode of reproduction. The strain had an absolute requirement for sea salts and tolerated up to 20 % (w/v) sea salts. Propionate, DL -lactate, 2-ketogluconate, 3-hydroxybutyrate and rhamnose were used as growth substrates, but not mannitol, salicin, 4-hydroxybenzoate or acetate. The major fatty acid was summed feature 7 (C 18 : 1 7 c / 9 t / 12 t ) and the DNA G+C content was 59.0±0.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that this strain was affiliated with the genus Roseovarius . Similarities between the 16S rRNA gene sequence of strain HJ50 T (1430 nt) and those of type strains of members of the genus Roseovarius were 94.1–96.3 %. DNA–DNA relatedness values between strain HJ50 T and the type strains of members of the genus Roseovarius were low (1.3–24.6 %). Physiological and biochemical differences support assignment of strain HJ50 T to the genus Roseovarius as a representative of a novel species. The name Roseovarius halotolerans sp. nov. is proposed, with HJ50 T (=KCTC 22224 T =LMG 24468 T ) as the type strain.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain HJ50 T is EU431217 .
A TLC showing the polar lipids of strain HJ50 T is available as supplementary material with the online version of this paper. |
| doi_str_mv | 10.1099/ijs.0.002576-0 |
| format | Article |
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2 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
3 School of Electrical and Computer Engineering, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
4 Yeongnam Agricultural Research Institute (NICS, RDA), Milyang 627-803, Republic of Korea
Correspondence Dong-Hyun Roh dhroh{at}chungbuk.ac.kr
A Gram-reaction-negative, non-motile, aerobic bacterium, designated HJ50 T , was isolated from deep seawater of the East Sea, South Korea. Cells were ovoid to rod-shaped (0.5–0.8 x 1.3–3.0 µm), often with unequal ends, suggesting a budding mode of reproduction. The strain had an absolute requirement for sea salts and tolerated up to 20 % (w/v) sea salts. Propionate, DL -lactate, 2-ketogluconate, 3-hydroxybutyrate and rhamnose were used as growth substrates, but not mannitol, salicin, 4-hydroxybenzoate or acetate. The major fatty acid was summed feature 7 (C 18 : 1 7 c / 9 t / 12 t ) and the DNA G+C content was 59.0±0.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that this strain was affiliated with the genus Roseovarius . Similarities between the 16S rRNA gene sequence of strain HJ50 T (1430 nt) and those of type strains of members of the genus Roseovarius were 94.1–96.3 %. DNA–DNA relatedness values between strain HJ50 T and the type strains of members of the genus Roseovarius were low (1.3–24.6 %). Physiological and biochemical differences support assignment of strain HJ50 T to the genus Roseovarius as a representative of a novel species. The name Roseovarius halotolerans sp. nov. is proposed, with HJ50 T (=KCTC 22224 T =LMG 24468 T ) as the type strain.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain HJ50 T is EU431217 .
A TLC showing the polar lipids of strain HJ50 T is available as supplementary material with the online version of this paper.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.002576-0</identifier><identifier>PMID: 19625435</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacteriology ; Biological and medical sciences ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fatty Acids - chemistry ; Fatty Acids - metabolism ; Fundamental and applied biological sciences. Psychology ; Marine ; Microbiology ; Molecular Sequence Data ; Phylogeny ; Rhodobacteraceae - classification ; Rhodobacteraceae - genetics ; Rhodobacteraceae - isolation & purification ; Rhodobacteraceae - metabolism ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2009-11, Vol.59 (11), p.2718-2723</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-7d0df202cc1b4357715067e37d15e5164a368e0151560345bd91e4ac98c91b0c3</citedby><cites>FETCH-LOGICAL-c429t-7d0df202cc1b4357715067e37d15e5164a368e0151560345bd91e4ac98c91b0c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22149787$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19625435$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Oh, Yong-Sik</creatorcontrib><creatorcontrib>Lim, Hayung-Joon</creatorcontrib><creatorcontrib>Cha, In-Tae</creatorcontrib><creatorcontrib>Im, Wan-Taek</creatorcontrib><creatorcontrib>Yoo, Jae-Soo</creatorcontrib><creatorcontrib>Kang, Ui Gum</creatorcontrib><creatorcontrib>Rhee, Sung-Keun</creatorcontrib><creatorcontrib>Roh, Dong-Hyun</creatorcontrib><title>Roseovarius halotolerans sp. nov., isolated from deep seawater</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Department of Microbiology and Biotechnology Research Institute, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
2 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
3 School of Electrical and Computer Engineering, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
4 Yeongnam Agricultural Research Institute (NICS, RDA), Milyang 627-803, Republic of Korea
Correspondence Dong-Hyun Roh dhroh{at}chungbuk.ac.kr
A Gram-reaction-negative, non-motile, aerobic bacterium, designated HJ50 T , was isolated from deep seawater of the East Sea, South Korea. Cells were ovoid to rod-shaped (0.5–0.8 x 1.3–3.0 µm), often with unequal ends, suggesting a budding mode of reproduction. The strain had an absolute requirement for sea salts and tolerated up to 20 % (w/v) sea salts. Propionate, DL -lactate, 2-ketogluconate, 3-hydroxybutyrate and rhamnose were used as growth substrates, but not mannitol, salicin, 4-hydroxybenzoate or acetate. The major fatty acid was summed feature 7 (C 18 : 1 7 c / 9 t / 12 t ) and the DNA G+C content was 59.0±0.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that this strain was affiliated with the genus Roseovarius . Similarities between the 16S rRNA gene sequence of strain HJ50 T (1430 nt) and those of type strains of members of the genus Roseovarius were 94.1–96.3 %. DNA–DNA relatedness values between strain HJ50 T and the type strains of members of the genus Roseovarius were low (1.3–24.6 %). Physiological and biochemical differences support assignment of strain HJ50 T to the genus Roseovarius as a representative of a novel species. The name Roseovarius halotolerans sp. nov. is proposed, with HJ50 T (=KCTC 22224 T =LMG 24468 T ) as the type strain.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain HJ50 T is EU431217 .
A TLC showing the polar lipids of strain HJ50 T is available as supplementary material with the online version of this paper.</description><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Fatty Acids - metabolism</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Marine</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Rhodobacteraceae - classification</subject><subject>Rhodobacteraceae - genetics</subject><subject>Rhodobacteraceae - isolation & purification</subject><subject>Rhodobacteraceae - metabolism</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp90M9rFDEUB_BQFPvLa48yFy0FZ3wvPzeXgpRWhYIg9RwymTfdlJnNmuy2-N83ZZd685Tw-LwffBk7Q-gQrP0SH0oHHQBXRrdwwI5Qat0qEPLN65_rQ3ZcygNALQC8Y4doNVdSqCN2-SsVSo8-x21pln5KmzRR9qvSlHXXrNJj97mJJU1-Q0Mz5jQ3A9G6KeSfaimfsrejnwq9378n7PfN9d3V9_b257cfV19v2yC53bRmgGHkwEPAvq41BhVoQ8IMqEihll7oBQEqVLqervrBIkkf7CJY7CGIE3a-m7vO6c-WysbNsQSaJr-itC3OCImcg9JVfvqv5CgECJAVdjsYciol0-jWOc4-_3UI7iVbV7N14HbZOqgNH_aTt_1Mwz--D7OCj3vgS_DTWGMMsbw6zlFaszDVXezcMt4vn2Imd0-rOdY7-phetirrEB03uBDPuU2OGw</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Oh, Yong-Sik</creator><creator>Lim, Hayung-Joon</creator><creator>Cha, In-Tae</creator><creator>Im, Wan-Taek</creator><creator>Yoo, Jae-Soo</creator><creator>Kang, Ui Gum</creator><creator>Rhee, Sung-Keun</creator><creator>Roh, Dong-Hyun</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>7X8</scope></search><sort><creationdate>20091101</creationdate><title>Roseovarius halotolerans sp. nov., isolated from deep seawater</title><author>Oh, Yong-Sik ; Lim, Hayung-Joon ; Cha, In-Tae ; Im, Wan-Taek ; Yoo, Jae-Soo ; Kang, Ui Gum ; Rhee, Sung-Keun ; Roh, Dong-Hyun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-7d0df202cc1b4357715067e37d15e5164a368e0151560345bd91e4ac98c91b0c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Fatty Acids - metabolism</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Marine</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Rhodobacteraceae - classification</topic><topic>Rhodobacteraceae - genetics</topic><topic>Rhodobacteraceae - isolation & purification</topic><topic>Rhodobacteraceae - metabolism</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Oh, Yong-Sik</creatorcontrib><creatorcontrib>Lim, Hayung-Joon</creatorcontrib><creatorcontrib>Cha, In-Tae</creatorcontrib><creatorcontrib>Im, Wan-Taek</creatorcontrib><creatorcontrib>Yoo, Jae-Soo</creatorcontrib><creatorcontrib>Kang, Ui Gum</creatorcontrib><creatorcontrib>Rhee, Sung-Keun</creatorcontrib><creatorcontrib>Roh, Dong-Hyun</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Oh, Yong-Sik</au><au>Lim, Hayung-Joon</au><au>Cha, In-Tae</au><au>Im, Wan-Taek</au><au>Yoo, Jae-Soo</au><au>Kang, Ui Gum</au><au>Rhee, Sung-Keun</au><au>Roh, Dong-Hyun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Roseovarius halotolerans sp. nov., isolated from deep seawater</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>59</volume><issue>11</issue><spage>2718</spage><epage>2723</epage><pages>2718-2723</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Department of Microbiology and Biotechnology Research Institute, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
2 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
3 School of Electrical and Computer Engineering, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea
4 Yeongnam Agricultural Research Institute (NICS, RDA), Milyang 627-803, Republic of Korea
Correspondence Dong-Hyun Roh dhroh{at}chungbuk.ac.kr
A Gram-reaction-negative, non-motile, aerobic bacterium, designated HJ50 T , was isolated from deep seawater of the East Sea, South Korea. Cells were ovoid to rod-shaped (0.5–0.8 x 1.3–3.0 µm), often with unequal ends, suggesting a budding mode of reproduction. The strain had an absolute requirement for sea salts and tolerated up to 20 % (w/v) sea salts. Propionate, DL -lactate, 2-ketogluconate, 3-hydroxybutyrate and rhamnose were used as growth substrates, but not mannitol, salicin, 4-hydroxybenzoate or acetate. The major fatty acid was summed feature 7 (C 18 : 1 7 c / 9 t / 12 t ) and the DNA G+C content was 59.0±0.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that this strain was affiliated with the genus Roseovarius . Similarities between the 16S rRNA gene sequence of strain HJ50 T (1430 nt) and those of type strains of members of the genus Roseovarius were 94.1–96.3 %. DNA–DNA relatedness values between strain HJ50 T and the type strains of members of the genus Roseovarius were low (1.3–24.6 %). Physiological and biochemical differences support assignment of strain HJ50 T to the genus Roseovarius as a representative of a novel species. The name Roseovarius halotolerans sp. nov. is proposed, with HJ50 T (=KCTC 22224 T =LMG 24468 T ) as the type strain.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain HJ50 T is EU431217 .
A TLC showing the polar lipids of strain HJ50 T is available as supplementary material with the online version of this paper.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>19625435</pmid><doi>10.1099/ijs.0.002576-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Bacteriology Biological and medical sciences DNA, Bacterial - genetics DNA, Ribosomal - genetics Fatty Acids - chemistry Fatty Acids - metabolism Fundamental and applied biological sciences. Psychology Marine Microbiology Molecular Sequence Data Phylogeny Rhodobacteraceae - classification Rhodobacteraceae - genetics Rhodobacteraceae - isolation & purification Rhodobacteraceae - metabolism RNA, Ribosomal, 16S - genetics Seawater - microbiology Systematics |
| title | Roseovarius halotolerans sp. nov., isolated from deep seawater |
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