Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities

Plant β- d-mannosidases and a rice β- d-glucosidase, Os3BGlu7, with weak β- d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26,...

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Veröffentlicht in:Archives of biochemistry and biophysics 2009-11, Vol.491 (1), p.85-95
Hauptverfasser: Kuntothom, Teerachai, Luang, Sukanya, Harvey, Andrew J., Fincher, Geoffrey B., Opassiri, Rodjana, Hrmova, Maria, Ketudat Cairns, James R.
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container_issue 1
container_start_page 85
container_title Archives of biochemistry and biophysics
container_volume 491
creator Kuntothom, Teerachai
Luang, Sukanya
Harvey, Andrew J.
Fincher, Geoffrey B.
Opassiri, Rodjana
Hrmova, Maria
Ketudat Cairns, James R.
description Plant β- d-mannosidases and a rice β- d-glucosidase, Os3BGlu7, with weak β- d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β- d-glucosidases from this cluster, and a β- d-mannosidase from barley (rHvBII), were expressed in Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β- d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β- d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher k cat/ K m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the + 2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII.
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To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β- d-glucosidases from this cluster, and a β- d-mannosidase from barley (rHvBII), were expressed in Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β- d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β- d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher k cat/ K m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the + 2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>19766588</pmid><doi>10.1016/j.abb.2009.09.004</doi><tpages>11</tpages></addata></record>
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subjects Amino Acid Sequence
beta-Glucosidase - metabolism
beta-Mannosidase - metabolism
Catalytic Domain
Cloning, Molecular
Glycoside Hydrolases - chemistry
Glycoside Hydrolases - genetics
Glycoside Hydrolases - isolation & purification
Glycoside Hydrolases - metabolism
Glycosides - chemistry
Glycosides - metabolism
Hordeum - enzymology
Hordeum vulgare
Isoenzymes - chemistry
Isoenzymes - genetics
Isoenzymes - isolation & purification
Isoenzymes - metabolism
Kinetics
Models, Molecular
Molecular modelling
Molecular Sequence Data
Oligosaccharides - chemistry
Oligosaccharides - metabolism
Oryza - enzymology
Oryza sativa
Phylogenetic analysis
Phylogeny
Sequence Alignment
Sequence Analysis, DNA
Subsite mapping
Substrate Specificity
title Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities
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