Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities
Plant β- d-mannosidases and a rice β- d-glucosidase, Os3BGlu7, with weak β- d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26,...
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Veröffentlicht in: | Archives of biochemistry and biophysics 2009-11, Vol.491 (1), p.85-95 |
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creator | Kuntothom, Teerachai Luang, Sukanya Harvey, Andrew J. Fincher, Geoffrey B. Opassiri, Rodjana Hrmova, Maria Ketudat Cairns, James R. |
description | Plant β-
d-mannosidases and a rice β-
d-glucosidase, Os3BGlu7, with weak β-
d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β-
d-glucosidases from this cluster, and a β-
d-mannosidase from barley (rHvBII), were expressed in
Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β-
d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β-
d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher
k
cat/
K
m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the
+
2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII. |
doi_str_mv | 10.1016/j.abb.2009.09.004 |
format | Article |
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d-mannosidases and a rice β-
d-glucosidase, Os3BGlu7, with weak β-
d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β-
d-glucosidases from this cluster, and a β-
d-mannosidase from barley (rHvBII), were expressed in
Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β-
d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β-
d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher
k
cat/
K
m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the
+
2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII.</description><identifier>ISSN: 0003-9861</identifier><identifier>EISSN: 1096-0384</identifier><identifier>DOI: 10.1016/j.abb.2009.09.004</identifier><identifier>PMID: 19766588</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; beta-Glucosidase - metabolism ; beta-Mannosidase - metabolism ; Catalytic Domain ; Cloning, Molecular ; Glycoside Hydrolases - chemistry ; Glycoside Hydrolases - genetics ; Glycoside Hydrolases - isolation & purification ; Glycoside Hydrolases - metabolism ; Glycosides - chemistry ; Glycosides - metabolism ; Hordeum - enzymology ; Hordeum vulgare ; Isoenzymes - chemistry ; Isoenzymes - genetics ; Isoenzymes - isolation & purification ; Isoenzymes - metabolism ; Kinetics ; Models, Molecular ; Molecular modelling ; Molecular Sequence Data ; Oligosaccharides - chemistry ; Oligosaccharides - metabolism ; Oryza - enzymology ; Oryza sativa ; Phylogenetic analysis ; Phylogeny ; Sequence Alignment ; Sequence Analysis, DNA ; Subsite mapping ; Substrate Specificity</subject><ispartof>Archives of biochemistry and biophysics, 2009-11, Vol.491 (1), p.85-95</ispartof><rights>2009 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c352t-8e39c79b5e2f8f76df09e137aa0101c720a702c99e69067a621ce05ed362011e3</citedby><cites>FETCH-LOGICAL-c352t-8e39c79b5e2f8f76df09e137aa0101c720a702c99e69067a621ce05ed362011e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.abb.2009.09.004$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19766588$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kuntothom, Teerachai</creatorcontrib><creatorcontrib>Luang, Sukanya</creatorcontrib><creatorcontrib>Harvey, Andrew J.</creatorcontrib><creatorcontrib>Fincher, Geoffrey B.</creatorcontrib><creatorcontrib>Opassiri, Rodjana</creatorcontrib><creatorcontrib>Hrmova, Maria</creatorcontrib><creatorcontrib>Ketudat Cairns, James R.</creatorcontrib><title>Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities</title><title>Archives of biochemistry and biophysics</title><addtitle>Arch Biochem Biophys</addtitle><description>Plant β-
d-mannosidases and a rice β-
d-glucosidase, Os3BGlu7, with weak β-
d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β-
d-glucosidases from this cluster, and a β-
d-mannosidase from barley (rHvBII), were expressed in
Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β-
d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β-
d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher
k
cat/
K
m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the
+
2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII.</description><subject>Amino Acid Sequence</subject><subject>beta-Glucosidase - metabolism</subject><subject>beta-Mannosidase - metabolism</subject><subject>Catalytic Domain</subject><subject>Cloning, Molecular</subject><subject>Glycoside Hydrolases - chemistry</subject><subject>Glycoside Hydrolases - genetics</subject><subject>Glycoside Hydrolases - isolation & purification</subject><subject>Glycoside Hydrolases - metabolism</subject><subject>Glycosides - chemistry</subject><subject>Glycosides - metabolism</subject><subject>Hordeum - enzymology</subject><subject>Hordeum vulgare</subject><subject>Isoenzymes - chemistry</subject><subject>Isoenzymes - genetics</subject><subject>Isoenzymes - isolation & purification</subject><subject>Isoenzymes - metabolism</subject><subject>Kinetics</subject><subject>Models, Molecular</subject><subject>Molecular modelling</subject><subject>Molecular Sequence Data</subject><subject>Oligosaccharides - chemistry</subject><subject>Oligosaccharides - metabolism</subject><subject>Oryza - enzymology</subject><subject>Oryza sativa</subject><subject>Phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Subsite mapping</subject><subject>Substrate Specificity</subject><issn>0003-9861</issn><issn>1096-0384</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UM1Kw0AYXESxtfoAXiQ3T6nfbpLdLJ6kaCsUBNGbsGx2v7Rb8lOzaSWv5YP4TKa26E0Y-GC-mYEZQi4pjClQfrMa6ywbMwA53gHiIzKkIHkIURofkyEARKFMOR2QM-9XAJTGnJ2SAZWC8yRNh-Tt2RkMcl26ogumMxosis7U3lkMlp1t6kJ79MGHa5fB12cY2HBRbH7-PR_oyh7YUlfVL2tat3WtQ39OTnJdeLw43BF5fbh_mczC-dP0cXI3D02UsDZMMZJGyCxBlqe54DYHiTQSWkNf0wgGWgAzUiKXwIXmjBqEBG3EWV8JoxG53ueum_p9g75VpfMGi0JXWG-8ElFMqaCM90q6V5qm9r7BXK0bV-qmUxTUblO1Uv2marep2gHi3nN1SN9kJdo_x2HEXnC7F2DfceuwUd44rAxa16Bpla3dP_Hfe1eHag</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Kuntothom, Teerachai</creator><creator>Luang, Sukanya</creator><creator>Harvey, Andrew J.</creator><creator>Fincher, Geoffrey B.</creator><creator>Opassiri, Rodjana</creator><creator>Hrmova, Maria</creator><creator>Ketudat Cairns, James R.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20091101</creationdate><title>Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities</title><author>Kuntothom, Teerachai ; Luang, Sukanya ; Harvey, Andrew J. ; Fincher, Geoffrey B. ; Opassiri, Rodjana ; Hrmova, Maria ; Ketudat Cairns, James R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c352t-8e39c79b5e2f8f76df09e137aa0101c720a702c99e69067a621ce05ed362011e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Amino Acid Sequence</topic><topic>beta-Glucosidase - metabolism</topic><topic>beta-Mannosidase - metabolism</topic><topic>Catalytic Domain</topic><topic>Cloning, Molecular</topic><topic>Glycoside Hydrolases - chemistry</topic><topic>Glycoside Hydrolases - genetics</topic><topic>Glycoside Hydrolases - isolation & purification</topic><topic>Glycoside Hydrolases - metabolism</topic><topic>Glycosides - chemistry</topic><topic>Glycosides - metabolism</topic><topic>Hordeum - enzymology</topic><topic>Hordeum vulgare</topic><topic>Isoenzymes - chemistry</topic><topic>Isoenzymes - genetics</topic><topic>Isoenzymes - isolation & purification</topic><topic>Isoenzymes - metabolism</topic><topic>Kinetics</topic><topic>Models, Molecular</topic><topic>Molecular modelling</topic><topic>Molecular Sequence Data</topic><topic>Oligosaccharides - chemistry</topic><topic>Oligosaccharides - metabolism</topic><topic>Oryza - enzymology</topic><topic>Oryza sativa</topic><topic>Phylogenetic analysis</topic><topic>Phylogeny</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Subsite mapping</topic><topic>Substrate Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kuntothom, Teerachai</creatorcontrib><creatorcontrib>Luang, Sukanya</creatorcontrib><creatorcontrib>Harvey, Andrew J.</creatorcontrib><creatorcontrib>Fincher, Geoffrey B.</creatorcontrib><creatorcontrib>Opassiri, Rodjana</creatorcontrib><creatorcontrib>Hrmova, Maria</creatorcontrib><creatorcontrib>Ketudat Cairns, James R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of biochemistry and biophysics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kuntothom, Teerachai</au><au>Luang, Sukanya</au><au>Harvey, Andrew J.</au><au>Fincher, Geoffrey B.</au><au>Opassiri, Rodjana</au><au>Hrmova, Maria</au><au>Ketudat Cairns, James R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities</atitle><jtitle>Archives of biochemistry and biophysics</jtitle><addtitle>Arch Biochem Biophys</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>491</volume><issue>1</issue><spage>85</spage><epage>95</epage><pages>85-95</pages><issn>0003-9861</issn><eissn>1096-0384</eissn><abstract>Plant β-
d-mannosidases and a rice β-
d-glucosidase, Os3BGlu7, with weak β-
d-mannosidase activity, cluster together in phylogenetic analysis. To investigate the relationship between substrate specificity and amino acid sequence similarity in family GH1 glycoside hydrolases, Os3BGlu8 and Os7BGlu26, putative rice β-
d-glucosidases from this cluster, and a β-
d-mannosidase from barley (rHvBII), were expressed in
Escherichia coli and characterized. Os3BGlu8, the amino acid sequence and molecular model of which are most similar to Os3BGlu7, hydrolysed 4-nitrophenyl-β-
d-glucopyranoside (4NPGlc) faster than 4-nitrophenyl-β-
d-mannopyranoside (4NPMan), while Os7BGlu26, which is most similar to rHvBII by these criteria, hydrolysed 4NPMan faster than 4NPGlc. All the enzymes hydrolyzed cellooligosaccharides with increased hydrolytic rates as the degree of polymerization increased from 3–6, but only rHvBII hydrolyzed cellobiose with a higher
k
cat/
K
m value than cellotriose. This was primarily due to strong binding of glucosyl residues at the
+
2 subsite for the rice enzymes, and unfavorable interactions at this subsite with rHvBII.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>19766588</pmid><doi>10.1016/j.abb.2009.09.004</doi><tpages>11</tpages></addata></record> |
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source | MEDLINE; Elsevier ScienceDirect Journals |
subjects | Amino Acid Sequence beta-Glucosidase - metabolism beta-Mannosidase - metabolism Catalytic Domain Cloning, Molecular Glycoside Hydrolases - chemistry Glycoside Hydrolases - genetics Glycoside Hydrolases - isolation & purification Glycoside Hydrolases - metabolism Glycosides - chemistry Glycosides - metabolism Hordeum - enzymology Hordeum vulgare Isoenzymes - chemistry Isoenzymes - genetics Isoenzymes - isolation & purification Isoenzymes - metabolism Kinetics Models, Molecular Molecular modelling Molecular Sequence Data Oligosaccharides - chemistry Oligosaccharides - metabolism Oryza - enzymology Oryza sativa Phylogenetic analysis Phylogeny Sequence Alignment Sequence Analysis, DNA Subsite mapping Substrate Specificity |
title | Rice family GH1 glycoside hydrolases with β- d-glucosidase and β- d-mannosidase activities |
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