Strain-dependent variability in growth and survival of Escherichia coli in agricultural soil
This study investigated strain-dependent variability in Escherichia coli survival in soil, and strain-dependent responses to variations in some soil conditions. Collections of E. coli were isolated from swine manure slurry, and from manured soil following 6 days of incubation in the laboratory. The...
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creator | Topp, Edward Welsh, Martha Tien, Yuan-Ching Dang, Angela Lazarovits, George Conn, Kenneth Zhu, Hong |
description | This study investigated strain-dependent variability in
Escherichia coli survival in soil, and strain-dependent responses to variations in some soil conditions. Collections of
E. coli were isolated from swine manure slurry, and from manured soil following 6 days of incubation in the laboratory. The bacteria were fingerprinted by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR). During the course of the incubation the composition of the
E. coli community changed dramatically suggesting that
E. coli phylotypes, distinguishable by ERIC-PCR fingerprinting, varied significantly in their ability to survive in soil under these conditions. A representative isolate from one ERIC group which increased in abundance in soil (designated strain C279) and one which decreased (designated strain C278) were chosen for comparison. These strains persisted comparatively when inoculated into loam soil. However, when added into a loam soil or a sandy soil supplemented with 10% (v/v) swine manure slurry, strain C279 increased in abundance 10-fold, whereas strain C278 did not. At 4°C, or in a clay loam soil, manure slurry did not support the growth of strain C279. These results indicate that the community composition of
E. coli populations in manured soils can be very dynamic, and that strains able to proliferate in manured soils can have a selective advantage. |
doi_str_mv | 10.1016/S0168-6496(03)00055-2 |
format | Article |
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Escherichia coli survival in soil, and strain-dependent responses to variations in some soil conditions. Collections of
E. coli were isolated from swine manure slurry, and from manured soil following 6 days of incubation in the laboratory. The bacteria were fingerprinted by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR). During the course of the incubation the composition of the
E. coli community changed dramatically suggesting that
E. coli phylotypes, distinguishable by ERIC-PCR fingerprinting, varied significantly in their ability to survive in soil under these conditions. A representative isolate from one ERIC group which increased in abundance in soil (designated strain C279) and one which decreased (designated strain C278) were chosen for comparison. These strains persisted comparatively when inoculated into loam soil. However, when added into a loam soil or a sandy soil supplemented with 10% (v/v) swine manure slurry, strain C279 increased in abundance 10-fold, whereas strain C278 did not. At 4°C, or in a clay loam soil, manure slurry did not support the growth of strain C279. These results indicate that the community composition of
E. coli populations in manured soils can be very dynamic, and that strains able to proliferate in manured soils can have a selective advantage.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1016/S0168-6496(03)00055-2</identifier><identifier>PMID: 19719611</identifier><language>eng</language><publisher>Oxford, UK: Elsevier B.V</publisher><subject>agricultural soils ; Agronomy. Soil science and plant productions ; Animal, plant and microbial ecology ; bacteria ; Biochemistry and biology ; Biological and medical sciences ; Chemical, physicochemical, biochemical and biological properties ; clay loam soils ; community structure ; Escherichia coli ; Fundamental and applied biological sciences. Psychology ; loam soils ; Manure ; Microbial ecology ; Microbiology ; phylotype ; Physics, chemistry, biochemistry and biology of agricultural and forest soils ; pig manure ; polymerase chain reaction ; sandy loam soils ; sandy soils ; Soil persistence ; Soil science ; Various environments (extraatmospheric space, air, water)</subject><ispartof>FEMS microbiology ecology, 2003-06, Vol.44 (3), p.303-308</ispartof><rights>2003 Federation of European Microbiological Societies</rights><rights>2003 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved. 2003</rights><rights>2003 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5383-5fb8649cb652be66ddc939305209ba975209441262c90ff02089c6deb627411d3</citedby><cites>FETCH-LOGICAL-c5383-5fb8649cb652be66ddc939305209ba975209441262c90ff02089c6deb627411d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2FS0168-6496%2803%2900055-2$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1016%2FS0168-6496%2803%2900055-2$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14735176$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19719611$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Topp, Edward</creatorcontrib><creatorcontrib>Welsh, Martha</creatorcontrib><creatorcontrib>Tien, Yuan-Ching</creatorcontrib><creatorcontrib>Dang, Angela</creatorcontrib><creatorcontrib>Lazarovits, George</creatorcontrib><creatorcontrib>Conn, Kenneth</creatorcontrib><creatorcontrib>Zhu, Hong</creatorcontrib><title>Strain-dependent variability in growth and survival of Escherichia coli in agricultural soil</title><title>FEMS microbiology ecology</title><addtitle>FEMS Microbiol Ecol</addtitle><description>This study investigated strain-dependent variability in
Escherichia coli survival in soil, and strain-dependent responses to variations in some soil conditions. Collections of
E. coli were isolated from swine manure slurry, and from manured soil following 6 days of incubation in the laboratory. The bacteria were fingerprinted by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR). During the course of the incubation the composition of the
E. coli community changed dramatically suggesting that
E. coli phylotypes, distinguishable by ERIC-PCR fingerprinting, varied significantly in their ability to survive in soil under these conditions. A representative isolate from one ERIC group which increased in abundance in soil (designated strain C279) and one which decreased (designated strain C278) were chosen for comparison. These strains persisted comparatively when inoculated into loam soil. However, when added into a loam soil or a sandy soil supplemented with 10% (v/v) swine manure slurry, strain C279 increased in abundance 10-fold, whereas strain C278 did not. At 4°C, or in a clay loam soil, manure slurry did not support the growth of strain C279. These results indicate that the community composition of
E. coli populations in manured soils can be very dynamic, and that strains able to proliferate in manured soils can have a selective advantage.</description><subject>agricultural soils</subject><subject>Agronomy. Soil science and plant productions</subject><subject>Animal, plant and microbial ecology</subject><subject>bacteria</subject><subject>Biochemistry and biology</subject><subject>Biological and medical sciences</subject><subject>Chemical, physicochemical, biochemical and biological properties</subject><subject>clay loam soils</subject><subject>community structure</subject><subject>Escherichia coli</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>loam soils</subject><subject>Manure</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>phylotype</subject><subject>Physics, chemistry, biochemistry and biology of agricultural and forest soils</subject><subject>pig manure</subject><subject>polymerase chain reaction</subject><subject>sandy loam soils</subject><subject>sandy soils</subject><subject>Soil persistence</subject><subject>Soil science</subject><subject>Various environments (extraatmospheric space, air, water)</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNqNkl9vFCEUxYnR2LX6EdR5UdsHlD8DDE_GNNvapMaHtW8mhAGmi2GHLcxss99eprOxMTHqCzchv8O99xwAeInRe4ww_7AqRwN5LfkJoqcIIcYgeQQWmIkaclnjx2DxCzkCz3L-gRBmtEZPwRGWAkuO8QJ8Xw1J-x5at3W9df1Q7XTyuvXBD_vK99VNinfDutK9rfKYdn6nQxW7apnN2iVv1l5XJgY_ofqmXIxhGFNhcvThOXjS6ZDdi0M9Btfny29nn-HV14vLs09X0DDaUMi6tilTmpYz0jrOrTWSSooYQbLVUky1rjHhxEjUdYigRhpuXcuJqDG29Bi8m9_dpng7ujyojc_GhaB7F8esRNma4AaLQr79K4kbwYtJsoBsBk2KOSfXqW3yG532CiM1BaDuA1CTuwpRdR-AIkX36tBgbDfOPqgOjhfgzQHQ2ejQJd0bnx-4WlCGBS-cnLk7H9z-_7qr8-UXimjRolkbx-2flfA3JZzmfj1LOh3VFGRW1ytS0PJpcCPF5MjHmXAlyZ13SWXjXW-c9cmZQdno_-HNT-ZayOA</recordid><startdate>200306</startdate><enddate>200306</enddate><creator>Topp, Edward</creator><creator>Welsh, Martha</creator><creator>Tien, Yuan-Ching</creator><creator>Dang, Angela</creator><creator>Lazarovits, George</creator><creator>Conn, Kenneth</creator><creator>Zhu, Hong</creator><general>Elsevier B.V</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>FBQ</scope><scope>IQODW</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7SN</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>200306</creationdate><title>Strain-dependent variability in growth and survival of Escherichia coli in agricultural soil</title><author>Topp, Edward ; Welsh, Martha ; Tien, Yuan-Ching ; Dang, Angela ; Lazarovits, George ; Conn, Kenneth ; Zhu, Hong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5383-5fb8649cb652be66ddc939305209ba975209441262c90ff02089c6deb627411d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>agricultural soils</topic><topic>Agronomy. Soil science and plant productions</topic><topic>Animal, plant and microbial ecology</topic><topic>bacteria</topic><topic>Biochemistry and biology</topic><topic>Biological and medical sciences</topic><topic>Chemical, physicochemical, biochemical and biological properties</topic><topic>clay loam soils</topic><topic>community structure</topic><topic>Escherichia coli</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>loam soils</topic><topic>Manure</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>phylotype</topic><topic>Physics, chemistry, biochemistry and biology of agricultural and forest soils</topic><topic>pig manure</topic><topic>polymerase chain reaction</topic><topic>sandy loam soils</topic><topic>sandy soils</topic><topic>Soil persistence</topic><topic>Soil science</topic><topic>Various environments (extraatmospheric space, air, water)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Topp, Edward</creatorcontrib><creatorcontrib>Welsh, Martha</creatorcontrib><creatorcontrib>Tien, Yuan-Ching</creatorcontrib><creatorcontrib>Dang, Angela</creatorcontrib><creatorcontrib>Lazarovits, George</creatorcontrib><creatorcontrib>Conn, Kenneth</creatorcontrib><creatorcontrib>Zhu, Hong</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Topp, Edward</au><au>Welsh, Martha</au><au>Tien, Yuan-Ching</au><au>Dang, Angela</au><au>Lazarovits, George</au><au>Conn, Kenneth</au><au>Zhu, Hong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Strain-dependent variability in growth and survival of Escherichia coli in agricultural soil</atitle><jtitle>FEMS microbiology ecology</jtitle><addtitle>FEMS Microbiol Ecol</addtitle><date>2003-06</date><risdate>2003</risdate><volume>44</volume><issue>3</issue><spage>303</spage><epage>308</epage><pages>303-308</pages><issn>0168-6496</issn><eissn>1574-6941</eissn><abstract>This study investigated strain-dependent variability in
Escherichia coli survival in soil, and strain-dependent responses to variations in some soil conditions. Collections of
E. coli were isolated from swine manure slurry, and from manured soil following 6 days of incubation in the laboratory. The bacteria were fingerprinted by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR). During the course of the incubation the composition of the
E. coli community changed dramatically suggesting that
E. coli phylotypes, distinguishable by ERIC-PCR fingerprinting, varied significantly in their ability to survive in soil under these conditions. A representative isolate from one ERIC group which increased in abundance in soil (designated strain C279) and one which decreased (designated strain C278) were chosen for comparison. These strains persisted comparatively when inoculated into loam soil. However, when added into a loam soil or a sandy soil supplemented with 10% (v/v) swine manure slurry, strain C279 increased in abundance 10-fold, whereas strain C278 did not. At 4°C, or in a clay loam soil, manure slurry did not support the growth of strain C279. These results indicate that the community composition of
E. coli populations in manured soils can be very dynamic, and that strains able to proliferate in manured soils can have a selective advantage.</abstract><cop>Oxford, UK</cop><pub>Elsevier B.V</pub><pmid>19719611</pmid><doi>10.1016/S0168-6496(03)00055-2</doi><tpages>6</tpages></addata></record> |
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source | Wiley Online Library Journals Frontfile Complete; Oxford Journals Open Access Collection; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
subjects | agricultural soils Agronomy. Soil science and plant productions Animal, plant and microbial ecology bacteria Biochemistry and biology Biological and medical sciences Chemical, physicochemical, biochemical and biological properties clay loam soils community structure Escherichia coli Fundamental and applied biological sciences. Psychology loam soils Manure Microbial ecology Microbiology phylotype Physics, chemistry, biochemistry and biology of agricultural and forest soils pig manure polymerase chain reaction sandy loam soils sandy soils Soil persistence Soil science Various environments (extraatmospheric space, air, water) |
title | Strain-dependent variability in growth and survival of Escherichia coli in agricultural soil |
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