In silico directed chemical probing of the adenosine receptor family
Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challeng...
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Veröffentlicht in: | Bioorganic & medicinal chemistry 2010-05, Vol.18 (9), p.3043-3052 |
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creator | Areias, Filipe M. Brea, Jose Gregori-Puigjané, Elisabet Zaki, Magdi E.A. Carvalho, M. Alice Domínguez, Eduardo Gutiérrez-de-Terán, Hugo Proença, M. Fernanda Loza, María I. Mestres, Jordi |
description | Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family.
One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family. |
doi_str_mv | 10.1016/j.bmc.2010.03.048 |
format | Article |
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One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.</description><subject>Adenosine A2 Receptor Antagonists</subject><subject>Adenosine A3 Receptor Antagonists</subject><subject>Adenosine antagonists</subject><subject>Biological and medical sciences</subject><subject>Cell Line</subject><subject>Chemogenomics</subject><subject>Combinatorial Chemistry Techniques</subject><subject>Computational chemical biology</subject><subject>Computer Simulation</subject><subject>Drug Delivery Systems</subject><subject>Humans</subject><subject>Medical sciences</subject><subject>Neuropharmacology</subject><subject>Neurotransmitters. Neurotransmission. Receptors</subject><subject>Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems</subject><subject>Pharmacology. Drug treatments</subject><subject>Purinergic P1 Receptor Antagonists</subject><subject>Receptor, Adenosine A2B - chemistry</subject><subject>Receptor, Adenosine A3 - chemistry</subject><subject>Receptors, Purinergic P1 - chemistry</subject><subject>Receptors, Purinergic P1 - classification</subject><subject>Small Molecule Libraries - chemistry</subject><subject>Small Molecule Libraries - metabolism</subject><subject>Small Molecule Libraries - pharmacology</subject><subject>Target profiling</subject><issn>0968-0896</issn><issn>1464-3391</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1rGzEQhkVpqR0nPyCXokvJad3RSqsPeippPgyGXJKz0GpnY5n9cKV1wf8-MnbaW07DwDPvzDyEXDNYMmDyx3ZZ935ZQu6BL0HoT2TOhBQF54Z9JnMwUhegjZyRi5S2AFAKw76SWQlcl5WAOfm9GmgKXfAjbUJEP2FD_Qb74F1Hd3Gsw_BKx5ZOG6SuwWFMYUCaQdxNY6St60N3uCRfWtclvDrXBXm5v3u-fSzWTw-r21_rwud1U6G4qtHLVirNeONYZUrwupHgJVNaVMZwJb2UyhlshBBli8oJUdUC2qo2mi_IzSk3H_Znj2myfUgeu84NOO6TVflvnjNUJtmJ9HFMKWJrdzH0Lh4sA3t0Z7c2u7NHdxa4ze7yzLdz-r7usfk38S4rA9_PgEtZTxvd4EP6z5XasFIdg36eOMwu_gaMNvmAg8eTYduM4YMz3gDTnIpu</recordid><startdate>20100501</startdate><enddate>20100501</enddate><creator>Areias, Filipe M.</creator><creator>Brea, Jose</creator><creator>Gregori-Puigjané, Elisabet</creator><creator>Zaki, Magdi E.A.</creator><creator>Carvalho, M. Alice</creator><creator>Domínguez, Eduardo</creator><creator>Gutiérrez-de-Terán, Hugo</creator><creator>Proença, M. Fernanda</creator><creator>Loza, María I.</creator><creator>Mestres, Jordi</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20100501</creationdate><title>In silico directed chemical probing of the adenosine receptor family</title><author>Areias, Filipe M. ; Brea, Jose ; Gregori-Puigjané, Elisabet ; Zaki, Magdi E.A. ; Carvalho, M. Alice ; Domínguez, Eduardo ; Gutiérrez-de-Terán, Hugo ; Proença, M. 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Drug treatments</topic><topic>Purinergic P1 Receptor Antagonists</topic><topic>Receptor, Adenosine A2B - chemistry</topic><topic>Receptor, Adenosine A3 - chemistry</topic><topic>Receptors, Purinergic P1 - chemistry</topic><topic>Receptors, Purinergic P1 - classification</topic><topic>Small Molecule Libraries - chemistry</topic><topic>Small Molecule Libraries - metabolism</topic><topic>Small Molecule Libraries - pharmacology</topic><topic>Target profiling</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Areias, Filipe M.</creatorcontrib><creatorcontrib>Brea, Jose</creatorcontrib><creatorcontrib>Gregori-Puigjané, Elisabet</creatorcontrib><creatorcontrib>Zaki, Magdi E.A.</creatorcontrib><creatorcontrib>Carvalho, M. Alice</creatorcontrib><creatorcontrib>Domínguez, Eduardo</creatorcontrib><creatorcontrib>Gutiérrez-de-Terán, Hugo</creatorcontrib><creatorcontrib>Proença, M. 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Fernanda</au><au>Loza, María I.</au><au>Mestres, Jordi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>In silico directed chemical probing of the adenosine receptor family</atitle><jtitle>Bioorganic & medicinal chemistry</jtitle><addtitle>Bioorg Med Chem</addtitle><date>2010-05-01</date><risdate>2010</risdate><volume>18</volume><issue>9</issue><spage>3043</spage><epage>3052</epage><pages>3043-3052</pages><issn>0968-0896</issn><eissn>1464-3391</eissn><abstract>Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family.
One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.</abstract><cop>Amsterdam</cop><pub>Elsevier Ltd</pub><pmid>20382540</pmid><doi>10.1016/j.bmc.2010.03.048</doi><tpages>10</tpages></addata></record> |
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subjects | Adenosine A2 Receptor Antagonists Adenosine A3 Receptor Antagonists Adenosine antagonists Biological and medical sciences Cell Line Chemogenomics Combinatorial Chemistry Techniques Computational chemical biology Computer Simulation Drug Delivery Systems Humans Medical sciences Neuropharmacology Neurotransmitters. Neurotransmission. Receptors Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems Pharmacology. Drug treatments Purinergic P1 Receptor Antagonists Receptor, Adenosine A2B - chemistry Receptor, Adenosine A3 - chemistry Receptors, Purinergic P1 - chemistry Receptors, Purinergic P1 - classification Small Molecule Libraries - chemistry Small Molecule Libraries - metabolism Small Molecule Libraries - pharmacology Target profiling |
title | In silico directed chemical probing of the adenosine receptor family |
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