In silico directed chemical probing of the adenosine receptor family

Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challeng...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Bioorganic & medicinal chemistry 2010-05, Vol.18 (9), p.3043-3052
Hauptverfasser: Areias, Filipe M., Brea, Jose, Gregori-Puigjané, Elisabet, Zaki, Magdi E.A., Carvalho, M. Alice, Domínguez, Eduardo, Gutiérrez-de-Terán, Hugo, Proença, M. Fernanda, Loza, María I., Mestres, Jordi
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 3052
container_issue 9
container_start_page 3043
container_title Bioorganic & medicinal chemistry
container_volume 18
creator Areias, Filipe M.
Brea, Jose
Gregori-Puigjané, Elisabet
Zaki, Magdi E.A.
Carvalho, M. Alice
Domínguez, Eduardo
Gutiérrez-de-Terán, Hugo
Proença, M. Fernanda
Loza, María I.
Mestres, Jordi
description Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.
doi_str_mv 10.1016/j.bmc.2010.03.048
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_733933767</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S096808961000252X</els_id><sourcerecordid>733933767</sourcerecordid><originalsourceid>FETCH-LOGICAL-c382t-737bec6f67813da15920c8d60c61784599376c667a9ed4442fe7a445b40f5b983</originalsourceid><addsrcrecordid>eNp9kE1rGzEQhkVpqR0nPyCXokvJad3RSqsPeippPgyGXJKz0GpnY5n9cKV1wf8-MnbaW07DwDPvzDyEXDNYMmDyx3ZZ935ZQu6BL0HoT2TOhBQF54Z9JnMwUhegjZyRi5S2AFAKw76SWQlcl5WAOfm9GmgKXfAjbUJEP2FD_Qb74F1Hd3Gsw_BKx5ZOG6SuwWFMYUCaQdxNY6St60N3uCRfWtclvDrXBXm5v3u-fSzWTw-r21_rwud1U6G4qtHLVirNeONYZUrwupHgJVNaVMZwJb2UyhlshBBli8oJUdUC2qo2mi_IzSk3H_Znj2myfUgeu84NOO6TVflvnjNUJtmJ9HFMKWJrdzH0Lh4sA3t0Z7c2u7NHdxa4ze7yzLdz-r7usfk38S4rA9_PgEtZTxvd4EP6z5XasFIdg36eOMwu_gaMNvmAg8eTYduM4YMz3gDTnIpu</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>733933767</pqid></control><display><type>article</type><title>In silico directed chemical probing of the adenosine receptor family</title><source>MEDLINE</source><source>Access via ScienceDirect (Elsevier)</source><creator>Areias, Filipe M. ; Brea, Jose ; Gregori-Puigjané, Elisabet ; Zaki, Magdi E.A. ; Carvalho, M. Alice ; Domínguez, Eduardo ; Gutiérrez-de-Terán, Hugo ; Proença, M. Fernanda ; Loza, María I. ; Mestres, Jordi</creator><creatorcontrib>Areias, Filipe M. ; Brea, Jose ; Gregori-Puigjané, Elisabet ; Zaki, Magdi E.A. ; Carvalho, M. Alice ; Domínguez, Eduardo ; Gutiérrez-de-Terán, Hugo ; Proença, M. Fernanda ; Loza, María I. ; Mestres, Jordi</creatorcontrib><description>Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.</description><identifier>ISSN: 0968-0896</identifier><identifier>EISSN: 1464-3391</identifier><identifier>DOI: 10.1016/j.bmc.2010.03.048</identifier><identifier>PMID: 20382540</identifier><language>eng</language><publisher>Amsterdam: Elsevier Ltd</publisher><subject>Adenosine A2 Receptor Antagonists ; Adenosine A3 Receptor Antagonists ; Adenosine antagonists ; Biological and medical sciences ; Cell Line ; Chemogenomics ; Combinatorial Chemistry Techniques ; Computational chemical biology ; Computer Simulation ; Drug Delivery Systems ; Humans ; Medical sciences ; Neuropharmacology ; Neurotransmitters. Neurotransmission. Receptors ; Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems ; Pharmacology. Drug treatments ; Purinergic P1 Receptor Antagonists ; Receptor, Adenosine A2B - chemistry ; Receptor, Adenosine A3 - chemistry ; Receptors, Purinergic P1 - chemistry ; Receptors, Purinergic P1 - classification ; Small Molecule Libraries - chemistry ; Small Molecule Libraries - metabolism ; Small Molecule Libraries - pharmacology ; Target profiling</subject><ispartof>Bioorganic &amp; medicinal chemistry, 2010-05, Vol.18 (9), p.3043-3052</ispartof><rights>2010 Elsevier Ltd</rights><rights>2015 INIST-CNRS</rights><rights>(c) 2010 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c382t-737bec6f67813da15920c8d60c61784599376c667a9ed4442fe7a445b40f5b983</citedby><cites>FETCH-LOGICAL-c382t-737bec6f67813da15920c8d60c61784599376c667a9ed4442fe7a445b40f5b983</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.bmc.2010.03.048$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=22891278$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20382540$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Areias, Filipe M.</creatorcontrib><creatorcontrib>Brea, Jose</creatorcontrib><creatorcontrib>Gregori-Puigjané, Elisabet</creatorcontrib><creatorcontrib>Zaki, Magdi E.A.</creatorcontrib><creatorcontrib>Carvalho, M. Alice</creatorcontrib><creatorcontrib>Domínguez, Eduardo</creatorcontrib><creatorcontrib>Gutiérrez-de-Terán, Hugo</creatorcontrib><creatorcontrib>Proença, M. Fernanda</creatorcontrib><creatorcontrib>Loza, María I.</creatorcontrib><creatorcontrib>Mestres, Jordi</creatorcontrib><title>In silico directed chemical probing of the adenosine receptor family</title><title>Bioorganic &amp; medicinal chemistry</title><addtitle>Bioorg Med Chem</addtitle><description>Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.</description><subject>Adenosine A2 Receptor Antagonists</subject><subject>Adenosine A3 Receptor Antagonists</subject><subject>Adenosine antagonists</subject><subject>Biological and medical sciences</subject><subject>Cell Line</subject><subject>Chemogenomics</subject><subject>Combinatorial Chemistry Techniques</subject><subject>Computational chemical biology</subject><subject>Computer Simulation</subject><subject>Drug Delivery Systems</subject><subject>Humans</subject><subject>Medical sciences</subject><subject>Neuropharmacology</subject><subject>Neurotransmitters. Neurotransmission. Receptors</subject><subject>Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems</subject><subject>Pharmacology. Drug treatments</subject><subject>Purinergic P1 Receptor Antagonists</subject><subject>Receptor, Adenosine A2B - chemistry</subject><subject>Receptor, Adenosine A3 - chemistry</subject><subject>Receptors, Purinergic P1 - chemistry</subject><subject>Receptors, Purinergic P1 - classification</subject><subject>Small Molecule Libraries - chemistry</subject><subject>Small Molecule Libraries - metabolism</subject><subject>Small Molecule Libraries - pharmacology</subject><subject>Target profiling</subject><issn>0968-0896</issn><issn>1464-3391</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1rGzEQhkVpqR0nPyCXokvJad3RSqsPeippPgyGXJKz0GpnY5n9cKV1wf8-MnbaW07DwDPvzDyEXDNYMmDyx3ZZ935ZQu6BL0HoT2TOhBQF54Z9JnMwUhegjZyRi5S2AFAKw76SWQlcl5WAOfm9GmgKXfAjbUJEP2FD_Qb74F1Hd3Gsw_BKx5ZOG6SuwWFMYUCaQdxNY6St60N3uCRfWtclvDrXBXm5v3u-fSzWTw-r21_rwud1U6G4qtHLVirNeONYZUrwupHgJVNaVMZwJb2UyhlshBBli8oJUdUC2qo2mi_IzSk3H_Znj2myfUgeu84NOO6TVflvnjNUJtmJ9HFMKWJrdzH0Lh4sA3t0Z7c2u7NHdxa4ze7yzLdz-r7usfk38S4rA9_PgEtZTxvd4EP6z5XasFIdg36eOMwu_gaMNvmAg8eTYduM4YMz3gDTnIpu</recordid><startdate>20100501</startdate><enddate>20100501</enddate><creator>Areias, Filipe M.</creator><creator>Brea, Jose</creator><creator>Gregori-Puigjané, Elisabet</creator><creator>Zaki, Magdi E.A.</creator><creator>Carvalho, M. Alice</creator><creator>Domínguez, Eduardo</creator><creator>Gutiérrez-de-Terán, Hugo</creator><creator>Proença, M. Fernanda</creator><creator>Loza, María I.</creator><creator>Mestres, Jordi</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20100501</creationdate><title>In silico directed chemical probing of the adenosine receptor family</title><author>Areias, Filipe M. ; Brea, Jose ; Gregori-Puigjané, Elisabet ; Zaki, Magdi E.A. ; Carvalho, M. Alice ; Domínguez, Eduardo ; Gutiérrez-de-Terán, Hugo ; Proença, M. Fernanda ; Loza, María I. ; Mestres, Jordi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c382t-737bec6f67813da15920c8d60c61784599376c667a9ed4442fe7a445b40f5b983</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Adenosine A2 Receptor Antagonists</topic><topic>Adenosine A3 Receptor Antagonists</topic><topic>Adenosine antagonists</topic><topic>Biological and medical sciences</topic><topic>Cell Line</topic><topic>Chemogenomics</topic><topic>Combinatorial Chemistry Techniques</topic><topic>Computational chemical biology</topic><topic>Computer Simulation</topic><topic>Drug Delivery Systems</topic><topic>Humans</topic><topic>Medical sciences</topic><topic>Neuropharmacology</topic><topic>Neurotransmitters. Neurotransmission. Receptors</topic><topic>Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems</topic><topic>Pharmacology. Drug treatments</topic><topic>Purinergic P1 Receptor Antagonists</topic><topic>Receptor, Adenosine A2B - chemistry</topic><topic>Receptor, Adenosine A3 - chemistry</topic><topic>Receptors, Purinergic P1 - chemistry</topic><topic>Receptors, Purinergic P1 - classification</topic><topic>Small Molecule Libraries - chemistry</topic><topic>Small Molecule Libraries - metabolism</topic><topic>Small Molecule Libraries - pharmacology</topic><topic>Target profiling</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Areias, Filipe M.</creatorcontrib><creatorcontrib>Brea, Jose</creatorcontrib><creatorcontrib>Gregori-Puigjané, Elisabet</creatorcontrib><creatorcontrib>Zaki, Magdi E.A.</creatorcontrib><creatorcontrib>Carvalho, M. Alice</creatorcontrib><creatorcontrib>Domínguez, Eduardo</creatorcontrib><creatorcontrib>Gutiérrez-de-Terán, Hugo</creatorcontrib><creatorcontrib>Proença, M. Fernanda</creatorcontrib><creatorcontrib>Loza, María I.</creatorcontrib><creatorcontrib>Mestres, Jordi</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Bioorganic &amp; medicinal chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Areias, Filipe M.</au><au>Brea, Jose</au><au>Gregori-Puigjané, Elisabet</au><au>Zaki, Magdi E.A.</au><au>Carvalho, M. Alice</au><au>Domínguez, Eduardo</au><au>Gutiérrez-de-Terán, Hugo</au><au>Proença, M. Fernanda</au><au>Loza, María I.</au><au>Mestres, Jordi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>In silico directed chemical probing of the adenosine receptor family</atitle><jtitle>Bioorganic &amp; medicinal chemistry</jtitle><addtitle>Bioorg Med Chem</addtitle><date>2010-05-01</date><risdate>2010</risdate><volume>18</volume><issue>9</issue><spage>3043</spage><epage>3052</epage><pages>3043-3052</pages><issn>0968-0896</issn><eissn>1464-3391</eissn><abstract>Scheme of the in silico profiling of 482 molecules across 86 GPCR targets (prediction of activity in blue) and results of the in vitro screening (% displacement of specific radioligand binding at 10μM concentration) against the four members of the adenosine receptor family. One of the grand challenges in chemical biology is identifying a small-molecule modulator for each individual function of all human proteins. Instead of targeting one protein at a time, an efficient approach to address this challenge is to target entire protein families by taking advantage of the relatively high levels of chemical promiscuity observed within certain boundaries of sequence phylogeny. We recently developed a computational approach to identifying the potential protein targets of compounds based on their similarity to known bioactive molecules for almost 700 targets. Here, we describe the direct identification of novel antagonists for all four adenosine receptor subtypes by applying our virtual profiling approach to a unique synthesis-driven chemical collection composed of 482 biologically-orphan molecules. These results illustrate the potential role of in silico target profiling to guide efficiently screening campaigns directed to discover new chemical probes for all members of a protein family.</abstract><cop>Amsterdam</cop><pub>Elsevier Ltd</pub><pmid>20382540</pmid><doi>10.1016/j.bmc.2010.03.048</doi><tpages>10</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0968-0896
ispartof Bioorganic & medicinal chemistry, 2010-05, Vol.18 (9), p.3043-3052
issn 0968-0896
1464-3391
language eng
recordid cdi_proquest_miscellaneous_733933767
source MEDLINE; Access via ScienceDirect (Elsevier)
subjects Adenosine A2 Receptor Antagonists
Adenosine A3 Receptor Antagonists
Adenosine antagonists
Biological and medical sciences
Cell Line
Chemogenomics
Combinatorial Chemistry Techniques
Computational chemical biology
Computer Simulation
Drug Delivery Systems
Humans
Medical sciences
Neuropharmacology
Neurotransmitters. Neurotransmission. Receptors
Peptidergic system (neuropeptide, opioid peptide, opiates...). Adenosinergic and purinergic systems
Pharmacology. Drug treatments
Purinergic P1 Receptor Antagonists
Receptor, Adenosine A2B - chemistry
Receptor, Adenosine A3 - chemistry
Receptors, Purinergic P1 - chemistry
Receptors, Purinergic P1 - classification
Small Molecule Libraries - chemistry
Small Molecule Libraries - metabolism
Small Molecule Libraries - pharmacology
Target profiling
title In silico directed chemical probing of the adenosine receptor family
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-02T23%3A18%3A02IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=In%20silico%20directed%20chemical%20probing%20of%20the%20adenosine%20receptor%20family&rft.jtitle=Bioorganic%20&%20medicinal%20chemistry&rft.au=Areias,%20Filipe%20M.&rft.date=2010-05-01&rft.volume=18&rft.issue=9&rft.spage=3043&rft.epage=3052&rft.pages=3043-3052&rft.issn=0968-0896&rft.eissn=1464-3391&rft_id=info:doi/10.1016/j.bmc.2010.03.048&rft_dat=%3Cproquest_cross%3E733933767%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=733933767&rft_id=info:pmid/20382540&rft_els_id=S096808961000252X&rfr_iscdi=true