Arcobacter marinus sp. nov
A slightly curved, rod-shaped marine bacterium, designated strain CL-S1(T), was isolated from near Dokdo, an island in the East Sea, Korea. Cells were Gram-negative and grew well under either aerobic or microaerobic conditions. Analyses of the 16S rRNA and gyrA gene sequences of strain CL-S1(T) reve...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2010-03, Vol.60 (Pt 3), p.531-536 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Kim, Hye Min Hwang, Chung Yeon Cho, Byung Cheol |
| description | A slightly curved, rod-shaped marine bacterium, designated strain CL-S1(T), was isolated from near Dokdo, an island in the East Sea, Korea. Cells were Gram-negative and grew well under either aerobic or microaerobic conditions. Analyses of the 16S rRNA and gyrA gene sequences of strain CL-S1(T) revealed an affiliation with the genus Arcobacter within the class Epsilonproteobacteria. Phylogenetic analyses based on 16S rRNA and gyrA gene sequences showed that strain CL-S1(T) formed a robust clade with Arcobacter halophilus LA31B(T), with sequence similarities of 96.1 and 88.2 %, respectively. DNA-DNA relatedness between strain CL-S1(T) and A. halophilus DSM 18005(T) was 44 %, indicating that they represent genomically distinct species. Strain CL-S1(T) grew optimally at 30-37 degrees C, at pH 7 and in the presence of 3-5 % NaCl. The dominant cellular fatty acids were iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c (28.4 %), C(16 : 0) (26.2 %) and C(18 : 1)omega7c (22.3 %). The DNA G+C content of strain CL-S1(T) was 28 mol%. Strain CL-S1(T) differed phenotypically from A. halophilus LA31B(T) based on its ability to grow aerobically at 10 degrees C and inability to grow under anaerobic conditions. Based on the data presented, strain CL-S1(T) is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter marinus sp. nov. is proposed. The type strain is CL-S1(T) (=KCCM 90072(T) =JCM 15502(T)). |
| doi_str_mv | 10.1099/ijs.0.007740-0 |
| format | Article |
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Cells were Gram-negative and grew well under either aerobic or microaerobic conditions. Analyses of the 16S rRNA and gyrA gene sequences of strain CL-S1(T) revealed an affiliation with the genus Arcobacter within the class Epsilonproteobacteria. Phylogenetic analyses based on 16S rRNA and gyrA gene sequences showed that strain CL-S1(T) formed a robust clade with Arcobacter halophilus LA31B(T), with sequence similarities of 96.1 and 88.2 %, respectively. DNA-DNA relatedness between strain CL-S1(T) and A. halophilus DSM 18005(T) was 44 %, indicating that they represent genomically distinct species. Strain CL-S1(T) grew optimally at 30-37 degrees C, at pH 7 and in the presence of 3-5 % NaCl. The dominant cellular fatty acids were iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c (28.4 %), C(16 : 0) (26.2 %) and C(18 : 1)omega7c (22.3 %). The DNA G+C content of strain CL-S1(T) was 28 mol%. Strain CL-S1(T) differed phenotypically from A. halophilus LA31B(T) based on its ability to grow aerobically at 10 degrees C and inability to grow under anaerobic conditions. Based on the data presented, strain CL-S1(T) is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter marinus sp. nov. is proposed. The type strain is CL-S1(T) (=KCCM 90072(T) =JCM 15502(T)).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.007740-0</identifier><identifier>PMID: 19654359</identifier><language>eng</language><publisher>Reading: Society for General Microbiology</publisher><subject>Arcobacter - classification ; Arcobacter - genetics ; Arcobacter - isolation & purification ; Arcobacter - metabolism ; Bacteriology ; Base Composition ; Biological and medical sciences ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fatty Acids - chemistry ; Fatty Acids - metabolism ; Fundamental and applied biological sciences. Psychology ; Korea ; Microbiology ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2010-03, Vol.60 (Pt 3), p.531-536</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c430t-6409ea49e2c03685f02b60369a9e8a219a353891839888a9af9f1b7a4d048c703</citedby><cites>FETCH-LOGICAL-c430t-6409ea49e2c03685f02b60369a9e8a219a353891839888a9af9f1b7a4d048c703</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22533213$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19654359$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Hye Min</creatorcontrib><creatorcontrib>Hwang, Chung Yeon</creatorcontrib><creatorcontrib>Cho, Byung Cheol</creatorcontrib><title>Arcobacter marinus sp. nov</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A slightly curved, rod-shaped marine bacterium, designated strain CL-S1(T), was isolated from near Dokdo, an island in the East Sea, Korea. Cells were Gram-negative and grew well under either aerobic or microaerobic conditions. Analyses of the 16S rRNA and gyrA gene sequences of strain CL-S1(T) revealed an affiliation with the genus Arcobacter within the class Epsilonproteobacteria. Phylogenetic analyses based on 16S rRNA and gyrA gene sequences showed that strain CL-S1(T) formed a robust clade with Arcobacter halophilus LA31B(T), with sequence similarities of 96.1 and 88.2 %, respectively. DNA-DNA relatedness between strain CL-S1(T) and A. halophilus DSM 18005(T) was 44 %, indicating that they represent genomically distinct species. Strain CL-S1(T) grew optimally at 30-37 degrees C, at pH 7 and in the presence of 3-5 % NaCl. The dominant cellular fatty acids were iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c (28.4 %), C(16 : 0) (26.2 %) and C(18 : 1)omega7c (22.3 %). The DNA G+C content of strain CL-S1(T) was 28 mol%. Strain CL-S1(T) differed phenotypically from A. halophilus LA31B(T) based on its ability to grow aerobically at 10 degrees C and inability to grow under anaerobic conditions. Based on the data presented, strain CL-S1(T) is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter marinus sp. nov. is proposed. The type strain is CL-S1(T) (=KCCM 90072(T) =JCM 15502(T)).</description><subject>Arcobacter - classification</subject><subject>Arcobacter - genetics</subject><subject>Arcobacter - isolation & purification</subject><subject>Arcobacter - metabolism</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Fatty Acids - metabolism</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Korea</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkE1Lw0AQhhdRbK1ePXiQXsRT4uxHNjvHUvyCghc9L5PtBlLSpO42gv_eLQ31NC_Dw8PMy9gth5wD4lOziTnkAGWpIIMzNuVK66wAqc5PWegJu4pxA5AWAJdswlEXShY4ZXeL4PqK3N6H-ZZC0w1xHnf5vOt_rtlFTW30N-Ocsa-X58_lW7b6eH1fLlaZUxL2mVaAnhR64UBqU9QgKp0SEnpDgiPJQhrkRqIxhpBqrHlVklqDMq4EOWOPR-8u9N-Dj3u7baLzbUud74doS5m0pSkxkfmRdKGPMfja7kKTrv61HOyhDpvqsGCPddiD-n5UD9XWr__x8f8EPIwARUdtHahzTTxxQhRSCi7lHya0ZOI</recordid><startdate>20100301</startdate><enddate>20100301</enddate><creator>Kim, Hye Min</creator><creator>Hwang, Chung Yeon</creator><creator>Cho, Byung Cheol</creator><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20100301</creationdate><title>Arcobacter marinus sp. nov</title><author>Kim, Hye Min ; Hwang, Chung Yeon ; Cho, Byung Cheol</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c430t-6409ea49e2c03685f02b60369a9e8a219a353891839888a9af9f1b7a4d048c703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Arcobacter - classification</topic><topic>Arcobacter - genetics</topic><topic>Arcobacter - isolation & purification</topic><topic>Arcobacter - metabolism</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Fatty Acids - metabolism</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Korea</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Hye Min</creatorcontrib><creatorcontrib>Hwang, Chung Yeon</creatorcontrib><creatorcontrib>Cho, Byung Cheol</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Hye Min</au><au>Hwang, Chung Yeon</au><au>Cho, Byung Cheol</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Arcobacter marinus sp. nov</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2010-03-01</date><risdate>2010</risdate><volume>60</volume><issue>Pt 3</issue><spage>531</spage><epage>536</epage><pages>531-536</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A slightly curved, rod-shaped marine bacterium, designated strain CL-S1(T), was isolated from near Dokdo, an island in the East Sea, Korea. Cells were Gram-negative and grew well under either aerobic or microaerobic conditions. Analyses of the 16S rRNA and gyrA gene sequences of strain CL-S1(T) revealed an affiliation with the genus Arcobacter within the class Epsilonproteobacteria. Phylogenetic analyses based on 16S rRNA and gyrA gene sequences showed that strain CL-S1(T) formed a robust clade with Arcobacter halophilus LA31B(T), with sequence similarities of 96.1 and 88.2 %, respectively. DNA-DNA relatedness between strain CL-S1(T) and A. halophilus DSM 18005(T) was 44 %, indicating that they represent genomically distinct species. Strain CL-S1(T) grew optimally at 30-37 degrees C, at pH 7 and in the presence of 3-5 % NaCl. The dominant cellular fatty acids were iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c (28.4 %), C(16 : 0) (26.2 %) and C(18 : 1)omega7c (22.3 %). The DNA G+C content of strain CL-S1(T) was 28 mol%. Strain CL-S1(T) differed phenotypically from A. halophilus LA31B(T) based on its ability to grow aerobically at 10 degrees C and inability to grow under anaerobic conditions. Based on the data presented, strain CL-S1(T) is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter marinus sp. nov. is proposed. The type strain is CL-S1(T) (=KCCM 90072(T) =JCM 15502(T)).</abstract><cop>Reading</cop><pub>Society for General Microbiology</pub><pmid>19654359</pmid><doi>10.1099/ijs.0.007740-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Arcobacter - classification Arcobacter - genetics Arcobacter - isolation & purification Arcobacter - metabolism Bacteriology Base Composition Biological and medical sciences DNA, Bacterial - genetics DNA, Ribosomal - genetics Fatty Acids - chemistry Fatty Acids - metabolism Fundamental and applied biological sciences. Psychology Korea Microbiology Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S - genetics Seawater - microbiology Systematics |
| title | Arcobacter marinus sp. nov |
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