Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov
A thiosulfate-oxidizing facultative chemolithoautotrophic Burkholderia sp. strain ATSB13T was previously isolated from rhizosphere soil of tobacco plant. Strain ATSB13T was aerobic, Gram-staining-negative, rod shaped and motile by means of sub-terminal flagellum. Strain ATSB13T exhibited mixotrophic...
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description | A thiosulfate-oxidizing facultative chemolithoautotrophic Burkholderia sp. strain ATSB13T was previously isolated from rhizosphere soil of tobacco plant. Strain ATSB13T was aerobic, Gram-staining-negative, rod shaped and motile by means of sub-terminal flagellum. Strain ATSB13T exhibited mixotrophic growth in a medium containing thiosulfate plus acetate. A phylogenetic study based on 16S rRNA gene sequence analysis indicated that strain ATSB13T was most closely related to Burkholderia kururiensis KP23T (98.7%), Burkholderia tuberum STM678T (96.5%) and Burkholderia phymatum STM815T (96.4%). Chemotaxonomic data [G+C 64.0 mol%, major fatty acids, C₁₈:₁ ω7c (28.22%), C₁₆:₁ ω7c/15 iso 2OH (15.15%), and C₁₆:₀ (14.91%) and Q-8 as predominant respiratory ubiquinone] supported the affiliation of the strain ATSB13T within the genus Burkholderia. Though the strain ATSB13T shared high 16S rRNA gene sequence similarity with the type strain of B. kururiensis but considerably distant from the latter in terms of several phenotypic and chemotaxonomic characteristics. DNA-DNA hybridization between strain ATSB13T and B. kururiensis KP23T was 100%, and hence, it is inferred that strain ATSB13T is a member of B. kururiensis. On the basis of data obtained from this study, we propose that B. kururiensis be subdivided into B. kururiensis subsp. kururiensis subsp. nov. (type strain KP23T = JCM 10599T = DSM 13646T) and B. kururiensis subsp. thiooxydans subsp. nov. (type strain ATSB13T = KACC 12758T). |
doi_str_mv | 10.1007/s00203-009-0517-4 |
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Strain ATSB13T was aerobic, Gram-staining-negative, rod shaped and motile by means of sub-terminal flagellum. Strain ATSB13T exhibited mixotrophic growth in a medium containing thiosulfate plus acetate. A phylogenetic study based on 16S rRNA gene sequence analysis indicated that strain ATSB13T was most closely related to Burkholderia kururiensis KP23T (98.7%), Burkholderia tuberum STM678T (96.5%) and Burkholderia phymatum STM815T (96.4%). Chemotaxonomic data [G+C 64.0 mol%, major fatty acids, C₁₈:₁ ω7c (28.22%), C₁₆:₁ ω7c/15 iso 2OH (15.15%), and C₁₆:₀ (14.91%) and Q-8 as predominant respiratory ubiquinone] supported the affiliation of the strain ATSB13T within the genus Burkholderia. Though the strain ATSB13T shared high 16S rRNA gene sequence similarity with the type strain of B. kururiensis but considerably distant from the latter in terms of several phenotypic and chemotaxonomic characteristics. DNA-DNA hybridization between strain ATSB13T and B. kururiensis KP23T was 100%, and hence, it is inferred that strain ATSB13T is a member of B. kururiensis. On the basis of data obtained from this study, we propose that B. kururiensis be subdivided into B. kururiensis subsp. kururiensis subsp. nov. (type strain KP23T = JCM 10599T = DSM 13646T) and B. kururiensis subsp. thiooxydans subsp. nov. (type strain ATSB13T = KACC 12758T).</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-009-0517-4</identifier><identifier>PMID: 19841903</identifier><identifier>CODEN: AMICCW</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>acetates ; Bacteria ; Bacteriology ; Biochemistry ; Biological and medical sciences ; Biomedical and Life Sciences ; Biotechnology ; Burkholderia - classification ; Burkholderia - genetics ; Burkholderia - growth & development ; Burkholderia - metabolism ; Burkholderia kururiensis ; Cell Biology ; Chemoautotrophic Growth - physiology ; chemotaxonomy ; culture media ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; Ecology ; fatty acids ; flagellum ; Fundamental and applied biological sciences. Psychology ; Life Sciences ; Metabolism ; Microbial Ecology ; Microbiology ; Miscellaneous ; new subspecies ; Nucleic Acid Hybridization ; nucleotide sequences ; Original Paper ; Oxidation ; Oxidation-Reduction ; Phenotype ; Phylogenetics ; Phylogeny ; Rhizosphere ; ribosomal RNA ; Rural development ; sequence homology ; soil ; Soil Microbiology ; Sulfur ; thiosulfates ; Thiosulfates - metabolism ; tobacco ; ubiquinones</subject><ispartof>Archives of microbiology, 2009-12, Vol.191 (12), p.885-894</ispartof><rights>Springer-Verlag 2009</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c490t-a2d09112196e6be710955a391d8f11e6444b62a14aa88ff6869726a0629e474c3</citedby><cites>FETCH-LOGICAL-c490t-a2d09112196e6be710955a391d8f11e6444b62a14aa88ff6869726a0629e474c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-009-0517-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-009-0517-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,778,782,27911,27912,41475,42544,51306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22167435$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19841903$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Anandham, Rangasamy</creatorcontrib><creatorcontrib>Indira Gandhi, Pandiyan</creatorcontrib><creatorcontrib>Kwon, Soon Wo</creatorcontrib><creatorcontrib>Sa, Tong Min</creatorcontrib><creatorcontrib>Kim, Yong Ki</creatorcontrib><creatorcontrib>Jee, Hyeong Jin</creatorcontrib><title>Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>A thiosulfate-oxidizing facultative chemolithoautotrophic Burkholderia sp. strain ATSB13T was previously isolated from rhizosphere soil of tobacco plant. Strain ATSB13T was aerobic, Gram-staining-negative, rod shaped and motile by means of sub-terminal flagellum. Strain ATSB13T exhibited mixotrophic growth in a medium containing thiosulfate plus acetate. A phylogenetic study based on 16S rRNA gene sequence analysis indicated that strain ATSB13T was most closely related to Burkholderia kururiensis KP23T (98.7%), Burkholderia tuberum STM678T (96.5%) and Burkholderia phymatum STM815T (96.4%). Chemotaxonomic data [G+C 64.0 mol%, major fatty acids, C₁₈:₁ ω7c (28.22%), C₁₆:₁ ω7c/15 iso 2OH (15.15%), and C₁₆:₀ (14.91%) and Q-8 as predominant respiratory ubiquinone] supported the affiliation of the strain ATSB13T within the genus Burkholderia. Though the strain ATSB13T shared high 16S rRNA gene sequence similarity with the type strain of B. kururiensis but considerably distant from the latter in terms of several phenotypic and chemotaxonomic characteristics. DNA-DNA hybridization between strain ATSB13T and B. kururiensis KP23T was 100%, and hence, it is inferred that strain ATSB13T is a member of B. kururiensis. On the basis of data obtained from this study, we propose that B. kururiensis be subdivided into B. kururiensis subsp. kururiensis subsp. nov. (type strain KP23T = JCM 10599T = DSM 13646T) and B. kururiensis subsp. thiooxydans subsp. nov. (type strain ATSB13T = KACC 12758T).</description><subject>acetates</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Biochemistry</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Burkholderia - classification</subject><subject>Burkholderia - genetics</subject><subject>Burkholderia - growth & development</subject><subject>Burkholderia - metabolism</subject><subject>Burkholderia kururiensis</subject><subject>Cell Biology</subject><subject>Chemoautotrophic Growth - physiology</subject><subject>chemotaxonomy</subject><subject>culture media</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>Ecology</subject><subject>fatty acids</subject><subject>flagellum</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Life Sciences</subject><subject>Metabolism</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>new subspecies</subject><subject>Nucleic Acid Hybridization</subject><subject>nucleotide sequences</subject><subject>Original Paper</subject><subject>Oxidation</subject><subject>Oxidation-Reduction</subject><subject>Phenotype</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Rhizosphere</subject><subject>ribosomal RNA</subject><subject>Rural development</subject><subject>sequence homology</subject><subject>soil</subject><subject>Soil Microbiology</subject><subject>Sulfur</subject><subject>thiosulfates</subject><subject>Thiosulfates - metabolism</subject><subject>tobacco</subject><subject>ubiquinones</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkltv1DAQhQMC0aXwA3gBCwnxQhbfcvELElTcpCIeoBJv0SSxG7dJnHqcare_HoddLQhxebI08805M9ZJkkeMrhmlxUuklFORUqpSmrEilbeTFZOCp7Tg3-4kKyooT0slxFFyH_GCUsbLsryXHDFVSqaoWN169cluXPBu6mxDBh2gdr3FgdiRvJn9Zef6VnsL5HL2s7d6RIsE5xqnNQmddW6zbWE8lEZ3vX5BgBho5j5AsNeaNJ0eomboHMzhYLUM49wbCJq4jW3tjR3PSQ1NiHZz9EfXx15LjHcD8Z29cTh12muCzvYExpZMUcoh9MQ4T5oeEK2xTTR1I3EmOmgStlMcCB7sj9JfLwL877V_KMVrHyR3DfSoH-7f4-Ts3duvJx_S08_vP568Pk0bqWhIgbdUMcaZynVe64JRlWUgFGtLw5jOpZR1zoFJgLI0Ji9zVfAcaM6VloVsxHHyfKcbj76aNYZqsNjovodRuxmrQoicCSVlJJ_-Rl642Y9xuYopFS0zmUWI7aDGO0SvTTV5O4DfVoxWS7SqXbSqGK1qiVa1CD_eC8_1oNufE_ssReDZHgBsoDcexsbigeOc5YUUiznfcRhb47n2v2z4D_cnuyEDroJzH4XPvnDKsoXM4t-K7wD8-e8</recordid><startdate>20091201</startdate><enddate>20091201</enddate><creator>Anandham, Rangasamy</creator><creator>Indira Gandhi, Pandiyan</creator><creator>Kwon, Soon Wo</creator><creator>Sa, Tong Min</creator><creator>Kim, Yong Ki</creator><creator>Jee, Hyeong Jin</creator><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20091201</creationdate><title>Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov</title><author>Anandham, Rangasamy ; Indira Gandhi, Pandiyan ; Kwon, Soon Wo ; Sa, Tong Min ; Kim, Yong Ki ; Jee, Hyeong Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c490t-a2d09112196e6be710955a391d8f11e6444b62a14aa88ff6869726a0629e474c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>acetates</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Biochemistry</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Burkholderia - classification</topic><topic>Burkholderia - genetics</topic><topic>Burkholderia - growth & development</topic><topic>Burkholderia - metabolism</topic><topic>Burkholderia kururiensis</topic><topic>Cell Biology</topic><topic>Chemoautotrophic Growth - physiology</topic><topic>chemotaxonomy</topic><topic>culture media</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>Ecology</topic><topic>fatty acids</topic><topic>flagellum</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Life Sciences</topic><topic>Metabolism</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>new subspecies</topic><topic>Nucleic Acid Hybridization</topic><topic>nucleotide sequences</topic><topic>Original Paper</topic><topic>Oxidation</topic><topic>Oxidation-Reduction</topic><topic>Phenotype</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Rhizosphere</topic><topic>ribosomal RNA</topic><topic>Rural development</topic><topic>sequence homology</topic><topic>soil</topic><topic>Soil Microbiology</topic><topic>Sulfur</topic><topic>thiosulfates</topic><topic>Thiosulfates - metabolism</topic><topic>tobacco</topic><topic>ubiquinones</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Anandham, Rangasamy</creatorcontrib><creatorcontrib>Indira Gandhi, Pandiyan</creatorcontrib><creatorcontrib>Kwon, Soon Wo</creatorcontrib><creatorcontrib>Sa, Tong Min</creatorcontrib><creatorcontrib>Kim, Yong Ki</creatorcontrib><creatorcontrib>Jee, Hyeong Jin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Anandham, Rangasamy</au><au>Indira Gandhi, Pandiyan</au><au>Kwon, Soon Wo</au><au>Sa, Tong Min</au><au>Kim, Yong Ki</au><au>Jee, Hyeong Jin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2009-12-01</date><risdate>2009</risdate><volume>191</volume><issue>12</issue><spage>885</spage><epage>894</epage><pages>885-894</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><coden>AMICCW</coden><abstract>A thiosulfate-oxidizing facultative chemolithoautotrophic Burkholderia sp. strain ATSB13T was previously isolated from rhizosphere soil of tobacco plant. Strain ATSB13T was aerobic, Gram-staining-negative, rod shaped and motile by means of sub-terminal flagellum. Strain ATSB13T exhibited mixotrophic growth in a medium containing thiosulfate plus acetate. A phylogenetic study based on 16S rRNA gene sequence analysis indicated that strain ATSB13T was most closely related to Burkholderia kururiensis KP23T (98.7%), Burkholderia tuberum STM678T (96.5%) and Burkholderia phymatum STM815T (96.4%). Chemotaxonomic data [G+C 64.0 mol%, major fatty acids, C₁₈:₁ ω7c (28.22%), C₁₆:₁ ω7c/15 iso 2OH (15.15%), and C₁₆:₀ (14.91%) and Q-8 as predominant respiratory ubiquinone] supported the affiliation of the strain ATSB13T within the genus Burkholderia. Though the strain ATSB13T shared high 16S rRNA gene sequence similarity with the type strain of B. kururiensis but considerably distant from the latter in terms of several phenotypic and chemotaxonomic characteristics. DNA-DNA hybridization between strain ATSB13T and B. kururiensis KP23T was 100%, and hence, it is inferred that strain ATSB13T is a member of B. kururiensis. On the basis of data obtained from this study, we propose that B. kururiensis be subdivided into B. kururiensis subsp. kururiensis subsp. nov. (type strain KP23T = JCM 10599T = DSM 13646T) and B. kururiensis subsp. thiooxydans subsp. nov. (type strain ATSB13T = KACC 12758T).</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>19841903</pmid><doi>10.1007/s00203-009-0517-4</doi><tpages>10</tpages></addata></record> |
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subjects | acetates Bacteria Bacteriology Biochemistry Biological and medical sciences Biomedical and Life Sciences Biotechnology Burkholderia - classification Burkholderia - genetics Burkholderia - growth & development Burkholderia - metabolism Burkholderia kururiensis Cell Biology Chemoautotrophic Growth - physiology chemotaxonomy culture media Deoxyribonucleic acid DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics Ecology fatty acids flagellum Fundamental and applied biological sciences. Psychology Life Sciences Metabolism Microbial Ecology Microbiology Miscellaneous new subspecies Nucleic Acid Hybridization nucleotide sequences Original Paper Oxidation Oxidation-Reduction Phenotype Phylogenetics Phylogeny Rhizosphere ribosomal RNA Rural development sequence homology soil Soil Microbiology Sulfur thiosulfates Thiosulfates - metabolism tobacco ubiquinones |
title | Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov |
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