Formamide modified polyacrylamide gels for DNA sequencing by capillary gel electrophoresis

Compressions are occasionally found during the separation of DNA sequencing fragments, particularly in G/C‐rich regions and in gels operated at room temperature. Addition of at least 10% formamide to urea/polyacrylamide sequencing gels improves the denaturing capacity of the gel, minimizing compress...

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Veröffentlicht in:Electrophoresis 1992, Vol.13 (1), p.484-486
Hauptverfasser: Rocheleau, Marie J., Grey, Ronda J., Chen, Da Yong, Harke, Heather R., Dovichi, Norman J.
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container_end_page 486
container_issue 1
container_start_page 484
container_title Electrophoresis
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creator Rocheleau, Marie J.
Grey, Ronda J.
Chen, Da Yong
Harke, Heather R.
Dovichi, Norman J.
description Compressions are occasionally found during the separation of DNA sequencing fragments, particularly in G/C‐rich regions and in gels operated at room temperature. Addition of at least 10% formamide to urea/polyacrylamide sequencing gels improves the denaturing capacity of the gel, minimizing compressions. Addition of 20% or more formamide decreases the separation rate, theoretical plate count, and resolution for normally migrating fragments. An optimum concentration of 10% formamide improves resolution of compressed regions without degrading the other characteristics of the gel. Operation of gels at room temperature simplifies the engineering associated with automated sequencers based on capillary gel electrophoresis.
doi_str_mv 10.1002/elps.11501301102
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subjects Analytical, structural and metabolic biochemistry
Base Sequence
Biological and medical sciences
DNA - chemistry
Electrophoresis, Polyacrylamide Gel - methods
Formamides
Fundamental and applied biological sciences. Psychology
Gels - chemistry
Nucleic Acid Denaturation
Nucleic acids
Temperature
title Formamide modified polyacrylamide gels for DNA sequencing by capillary gel electrophoresis
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