Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers

Results of anharmonic frequency calculations carried out for GlysLysH+ and GlyGlyH+ are presented and compared to gas phase electrospray ionization (ESI) spectroscopy experiments. Anharmonic frequencies are obtained via correlation-corrected vibrational self-consistent field (CC-VSCF) calculations....

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Molecules, spectroscopy, kinetics, environment, & general theory, 2009-03, Vol.113 (10), p.1905-1912
Hauptverfasser: Adesokan, Adeyemi A, Gerber, R. B
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1912
container_issue 10
container_start_page 1905
container_title The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory
container_volume 113
creator Adesokan, Adeyemi A
Gerber, R. B
description Results of anharmonic frequency calculations carried out for GlysLysH+ and GlyGlyH+ are presented and compared to gas phase electrospray ionization (ESI) spectroscopy experiments. Anharmonic frequencies are obtained via correlation-corrected vibrational self-consistent field (CC-VSCF) calculations. The potential used is based on the PM3 semiempirical electronic structure method, but improved by fitting to ab initio MP2 calculations at the harmonic level. The key results are as follows: (1) Hydrogens acting as intermolecular bridges have very anharmonic stretches whose frequencies cannot be reliably predicted by the harmonic approximation. An example is the carboxylate bound NH3 + stretch. (2) The computed anharmonic vibrational frequencies are in good agreement with experiment and provides a very large improvement over harmonic frequencies especially for OH and NH stretches. For example the calculated CC-VSCF frequencies of GlysLysH+ and GlyGlyH+ have overall average deviations of 1.35% and 1.48% only, respectively, from experiment. (3) The harmonic OH bond stretching frequency deviates by 6.64% from experiments. The CC-VSCF calculations reduce this deviation by more than an order of magnitude to 0.56%. The anharmonicity of the OH stretch is intrinsic, rather than due to coupling with other modes. (4) Anharmonic coupling between the NH3 + stretch and several other normal modes is strong, and provide the main contribution for the anharmonicity of this mode. Properties of the potential energy surfaces of the proton-bound complexes are briefly discussed in light of the results.
doi_str_mv 10.1021/jp807106h
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_733141162</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>733141162</sourcerecordid><originalsourceid>FETCH-LOGICAL-a380t-daf0a5d353d06d7fb7e47a8ddc94f962954970c30c167d72949952f23c4178e73</originalsourceid><addsrcrecordid>eNptkE1LxDAURYMojo4u_AOSjYiL6kvSNM2yjp8woDDqtmSSlMnQNjVpF_Pvrc6gG1fvwjtcuAehMwLXBCi5WXc5CALZag8dEU4h4ZTw_TFDLhOeMTlBxzGuAYAwmh6iCZGQjZEfoUXRrlRofOs0_nDLoHrnW1XjRWd1H3zUvtvgmar1UP-8Iq58wK_B975Nbv3QGlw0rvW40M7gO9fYEE_QQaXqaE93d4reH-7fZk_J_OXxeVbME8Vy6BOjKlDcMM4MZEZUS2FToXJjtEwrmVHJUylAM9AkE0ZQmUrJaUWZTonIrWBTdLnt7YL_HGzsy8ZFbetatdYPsRSMkZSQjI7k1ZbU46QYbFV2wTUqbEoC5bfC8lfhyJ7vWodlY80fuXM2AhdbQOlYrv0QRl_xn6Iv2sp3Yg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>733141162</pqid></control><display><type>article</type><title>Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers</title><source>MEDLINE</source><source>ACS Publications</source><creator>Adesokan, Adeyemi A ; Gerber, R. B</creator><creatorcontrib>Adesokan, Adeyemi A ; Gerber, R. B</creatorcontrib><description>Results of anharmonic frequency calculations carried out for GlysLysH+ and GlyGlyH+ are presented and compared to gas phase electrospray ionization (ESI) spectroscopy experiments. Anharmonic frequencies are obtained via correlation-corrected vibrational self-consistent field (CC-VSCF) calculations. The potential used is based on the PM3 semiempirical electronic structure method, but improved by fitting to ab initio MP2 calculations at the harmonic level. The key results are as follows: (1) Hydrogens acting as intermolecular bridges have very anharmonic stretches whose frequencies cannot be reliably predicted by the harmonic approximation. An example is the carboxylate bound NH3 + stretch. (2) The computed anharmonic vibrational frequencies are in good agreement with experiment and provides a very large improvement over harmonic frequencies especially for OH and NH stretches. For example the calculated CC-VSCF frequencies of GlysLysH+ and GlyGlyH+ have overall average deviations of 1.35% and 1.48% only, respectively, from experiment. (3) The harmonic OH bond stretching frequency deviates by 6.64% from experiments. The CC-VSCF calculations reduce this deviation by more than an order of magnitude to 0.56%. The anharmonicity of the OH stretch is intrinsic, rather than due to coupling with other modes. (4) Anharmonic coupling between the NH3 + stretch and several other normal modes is strong, and provide the main contribution for the anharmonicity of this mode. Properties of the potential energy surfaces of the proton-bound complexes are briefly discussed in light of the results.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp807106h</identifier><identifier>PMID: 19061325</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Computational Biology ; Dipeptides - chemistry ; Energy Transfer ; Glycylglycine - chemistry ; Models, Chemical ; Models, Molecular ; Phase Transition ; Protons ; Spectrum Analysis ; Thermodynamics ; Vibration</subject><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory, 2009-03, Vol.113 (10), p.1905-1912</ispartof><rights>Copyright © 2009 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a380t-daf0a5d353d06d7fb7e47a8ddc94f962954970c30c167d72949952f23c4178e73</citedby><cites>FETCH-LOGICAL-a380t-daf0a5d353d06d7fb7e47a8ddc94f962954970c30c167d72949952f23c4178e73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jp807106h$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jp807106h$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>315,782,786,2769,27085,27933,27934,56747,56797</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19061325$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Adesokan, Adeyemi A</creatorcontrib><creatorcontrib>Gerber, R. B</creatorcontrib><title>Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>Results of anharmonic frequency calculations carried out for GlysLysH+ and GlyGlyH+ are presented and compared to gas phase electrospray ionization (ESI) spectroscopy experiments. Anharmonic frequencies are obtained via correlation-corrected vibrational self-consistent field (CC-VSCF) calculations. The potential used is based on the PM3 semiempirical electronic structure method, but improved by fitting to ab initio MP2 calculations at the harmonic level. The key results are as follows: (1) Hydrogens acting as intermolecular bridges have very anharmonic stretches whose frequencies cannot be reliably predicted by the harmonic approximation. An example is the carboxylate bound NH3 + stretch. (2) The computed anharmonic vibrational frequencies are in good agreement with experiment and provides a very large improvement over harmonic frequencies especially for OH and NH stretches. For example the calculated CC-VSCF frequencies of GlysLysH+ and GlyGlyH+ have overall average deviations of 1.35% and 1.48% only, respectively, from experiment. (3) The harmonic OH bond stretching frequency deviates by 6.64% from experiments. The CC-VSCF calculations reduce this deviation by more than an order of magnitude to 0.56%. The anharmonicity of the OH stretch is intrinsic, rather than due to coupling with other modes. (4) Anharmonic coupling between the NH3 + stretch and several other normal modes is strong, and provide the main contribution for the anharmonicity of this mode. Properties of the potential energy surfaces of the proton-bound complexes are briefly discussed in light of the results.</description><subject>Computational Biology</subject><subject>Dipeptides - chemistry</subject><subject>Energy Transfer</subject><subject>Glycylglycine - chemistry</subject><subject>Models, Chemical</subject><subject>Models, Molecular</subject><subject>Phase Transition</subject><subject>Protons</subject><subject>Spectrum Analysis</subject><subject>Thermodynamics</subject><subject>Vibration</subject><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkE1LxDAURYMojo4u_AOSjYiL6kvSNM2yjp8woDDqtmSSlMnQNjVpF_Pvrc6gG1fvwjtcuAehMwLXBCi5WXc5CALZag8dEU4h4ZTw_TFDLhOeMTlBxzGuAYAwmh6iCZGQjZEfoUXRrlRofOs0_nDLoHrnW1XjRWd1H3zUvtvgmar1UP-8Iq58wK_B975Nbv3QGlw0rvW40M7gO9fYEE_QQaXqaE93d4reH-7fZk_J_OXxeVbME8Vy6BOjKlDcMM4MZEZUS2FToXJjtEwrmVHJUylAM9AkE0ZQmUrJaUWZTonIrWBTdLnt7YL_HGzsy8ZFbetatdYPsRSMkZSQjI7k1ZbU46QYbFV2wTUqbEoC5bfC8lfhyJ7vWodlY80fuXM2AhdbQOlYrv0QRl_xn6Iv2sp3Yg</recordid><startdate>20090312</startdate><enddate>20090312</enddate><creator>Adesokan, Adeyemi A</creator><creator>Gerber, R. B</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20090312</creationdate><title>Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers</title><author>Adesokan, Adeyemi A ; Gerber, R. B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a380t-daf0a5d353d06d7fb7e47a8ddc94f962954970c30c167d72949952f23c4178e73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Computational Biology</topic><topic>Dipeptides - chemistry</topic><topic>Energy Transfer</topic><topic>Glycylglycine - chemistry</topic><topic>Models, Chemical</topic><topic>Models, Molecular</topic><topic>Phase Transition</topic><topic>Protons</topic><topic>Spectrum Analysis</topic><topic>Thermodynamics</topic><topic>Vibration</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Adesokan, Adeyemi A</creatorcontrib><creatorcontrib>Gerber, R. B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Adesokan, Adeyemi A</au><au>Gerber, R. B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers</atitle><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</jtitle><addtitle>J. Phys. Chem. A</addtitle><date>2009-03-12</date><risdate>2009</risdate><volume>113</volume><issue>10</issue><spage>1905</spage><epage>1912</epage><pages>1905-1912</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>Results of anharmonic frequency calculations carried out for GlysLysH+ and GlyGlyH+ are presented and compared to gas phase electrospray ionization (ESI) spectroscopy experiments. Anharmonic frequencies are obtained via correlation-corrected vibrational self-consistent field (CC-VSCF) calculations. The potential used is based on the PM3 semiempirical electronic structure method, but improved by fitting to ab initio MP2 calculations at the harmonic level. The key results are as follows: (1) Hydrogens acting as intermolecular bridges have very anharmonic stretches whose frequencies cannot be reliably predicted by the harmonic approximation. An example is the carboxylate bound NH3 + stretch. (2) The computed anharmonic vibrational frequencies are in good agreement with experiment and provides a very large improvement over harmonic frequencies especially for OH and NH stretches. For example the calculated CC-VSCF frequencies of GlysLysH+ and GlyGlyH+ have overall average deviations of 1.35% and 1.48% only, respectively, from experiment. (3) The harmonic OH bond stretching frequency deviates by 6.64% from experiments. The CC-VSCF calculations reduce this deviation by more than an order of magnitude to 0.56%. The anharmonicity of the OH stretch is intrinsic, rather than due to coupling with other modes. (4) Anharmonic coupling between the NH3 + stretch and several other normal modes is strong, and provide the main contribution for the anharmonicity of this mode. Properties of the potential energy surfaces of the proton-bound complexes are briefly discussed in light of the results.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>19061325</pmid><doi>10.1021/jp807106h</doi><tpages>8</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1089-5639
ispartof The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2009-03, Vol.113 (10), p.1905-1912
issn 1089-5639
1520-5215
language eng
recordid cdi_proquest_miscellaneous_733141162
source MEDLINE; ACS Publications
subjects Computational Biology
Dipeptides - chemistry
Energy Transfer
Glycylglycine - chemistry
Models, Chemical
Models, Molecular
Phase Transition
Protons
Spectrum Analysis
Thermodynamics
Vibration
title Anharmonic Vibrational Spectroscopy Calculations for Proton-Bound Amino Acid Dimers
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-02T23%3A02%3A22IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Anharmonic%20Vibrational%20Spectroscopy%20Calculations%20for%20Proton-Bound%20Amino%20Acid%20Dimers&rft.jtitle=The%20journal%20of%20physical%20chemistry.%20A,%20Molecules,%20spectroscopy,%20kinetics,%20environment,%20&%20general%20theory&rft.au=Adesokan,%20Adeyemi%20A&rft.date=2009-03-12&rft.volume=113&rft.issue=10&rft.spage=1905&rft.epage=1912&rft.pages=1905-1912&rft.issn=1089-5639&rft.eissn=1520-5215&rft_id=info:doi/10.1021/jp807106h&rft_dat=%3Cproquest_cross%3E733141162%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=733141162&rft_id=info:pmid/19061325&rfr_iscdi=true