SPEER: A new family of testis-specific genes from the mouse
Differential cloning revealed a partial mRNA sequence expressed in the mouse testis, which on further molecular characterization proved to be a member of a new family of 14 transcribed genes. Six of the genes appear to be expressed pseudogenes. The remainder indicate an open reading frame of approxi...
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Veröffentlicht in: | Biology of reproduction 2003-06, Vol.68 (6), p.2044-2054 |
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creator | SPIESS, Andrej-Nikolai WALTHER, Norbert MÜLLER, Nadine BALVERS, Marga HANSIS, Christoph IVELL, Richard |
description | Differential cloning revealed a partial mRNA sequence expressed in the mouse testis, which on further molecular characterization proved to be a member of a new family of 14 transcribed genes. Six of the genes appear to be expressed pseudogenes. The remainder indicate an open reading frame of approximately 200-220 amino acids encoding proteins with a very high proportion of alpha helical secondary structure, comprising approximately 15% glutamate residues. Because of this property, the family has been named SPErm-associated glutamate (E)-Rich protein (SPEER). Three members were chosen for more detailed characterization: SPEER-1 (pseudogene), SPEER-2, and SPEER-4D. All three are expressed tissue specifically in the testis of mice, with only very weak expression evident in the rat testis but in no other species tested. Using reverse transcription-polymerase chain reaction (RT-PCR), all three transcripts can be detected also in the epididymis, presumably due to the presence of spermatozoa. All three transcripts are expressed to high levels in haploid germ cells at the spermatocyte-spermatid transition. SPEER-1 mRNA is present in the cytoplasm as a sense transcript, SPEER-2 appears to be made mostly as an antisense transcript, whereas SPEER-4D appears to be localized within a subcellular compartment as a conventional sense transcript. Codon usage analysis suggests that all but the pseudogenes can be expressed as protein, confirmed for SPEER-2 and SPEER-4D by in vitro transcription/translation. An antibody raised against a peptide region of SPEER-4D, which probably cross-reacts with other SPEER members, immunohistochemically stains the nuclei of early round spermatids. While there are no true homologies to other proteins in the genome databases, some motifs are present that suggest a relationship to nuclear matrix proteins, implying that the SPEER family is a new group of haploid sperm-specific nuclear factors. |
doi_str_mv | 10.1043/0006-3363(2003)068(2044:SANFOT)2.0.CO;2 |
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Six of the genes appear to be expressed pseudogenes. The remainder indicate an open reading frame of approximately 200-220 amino acids encoding proteins with a very high proportion of alpha helical secondary structure, comprising approximately 15% glutamate residues. Because of this property, the family has been named SPErm-associated glutamate (E)-Rich protein (SPEER). Three members were chosen for more detailed characterization: SPEER-1 (pseudogene), SPEER-2, and SPEER-4D. All three are expressed tissue specifically in the testis of mice, with only very weak expression evident in the rat testis but in no other species tested. Using reverse transcription-polymerase chain reaction (RT-PCR), all three transcripts can be detected also in the epididymis, presumably due to the presence of spermatozoa. All three transcripts are expressed to high levels in haploid germ cells at the spermatocyte-spermatid transition. SPEER-1 mRNA is present in the cytoplasm as a sense transcript, SPEER-2 appears to be made mostly as an antisense transcript, whereas SPEER-4D appears to be localized within a subcellular compartment as a conventional sense transcript. Codon usage analysis suggests that all but the pseudogenes can be expressed as protein, confirmed for SPEER-2 and SPEER-4D by in vitro transcription/translation. An antibody raised against a peptide region of SPEER-4D, which probably cross-reacts with other SPEER members, immunohistochemically stains the nuclei of early round spermatids. While there are no true homologies to other proteins in the genome databases, some motifs are present that suggest a relationship to nuclear matrix proteins, implying that the SPEER family is a new group of haploid sperm-specific nuclear factors.</description><identifier>ISSN: 0006-3363</identifier><identifier>EISSN: 1529-7268</identifier><identifier>DOI: 10.1043/0006-3363(2003)068(2044:SANFOT)2.0.CO;2</identifier><identifier>PMID: 12606357</identifier><identifier>CODEN: BIREBV</identifier><language>eng</language><publisher>Madison, WI: Society for the Study of Reproduction</publisher><subject>Amino Acid Sequence ; Animals ; Biological and medical sciences ; Cell Nucleus - genetics ; Cloning, Molecular ; Computational Biology ; DNA Primers ; Fundamental and applied biological sciences. Psychology ; Gene Expression Regulation - genetics ; Gene Expression Regulation - physiology ; Hormone metabolism and regulation ; In Situ Hybridization ; Male ; Mammalian male genital system ; Meiosis - physiology ; Mice ; Molecular Sequence Data ; Nuclear Proteins - biosynthesis ; Nuclear Proteins - genetics ; Open Reading Frames - genetics ; Protein Biosynthesis - genetics ; Protein Structure, Secondary - physiology ; Reverse Transcriptase Polymerase Chain Reaction ; Seminal Plasma Proteins - biosynthesis ; Seminal Plasma Proteins - genetics ; Testis - physiology ; Vertebrates: reproduction</subject><ispartof>Biology of reproduction, 2003-06, Vol.68 (6), p.2044-2054</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,778,782,27907,27908</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15153071$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12606357$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>SPIESS, Andrej-Nikolai</creatorcontrib><creatorcontrib>WALTHER, Norbert</creatorcontrib><creatorcontrib>MÜLLER, Nadine</creatorcontrib><creatorcontrib>BALVERS, Marga</creatorcontrib><creatorcontrib>HANSIS, Christoph</creatorcontrib><creatorcontrib>IVELL, Richard</creatorcontrib><title>SPEER: A new family of testis-specific genes from the mouse</title><title>Biology of reproduction</title><addtitle>Biol Reprod</addtitle><description>Differential cloning revealed a partial mRNA sequence expressed in the mouse testis, which on further molecular characterization proved to be a member of a new family of 14 transcribed genes. Six of the genes appear to be expressed pseudogenes. The remainder indicate an open reading frame of approximately 200-220 amino acids encoding proteins with a very high proportion of alpha helical secondary structure, comprising approximately 15% glutamate residues. Because of this property, the family has been named SPErm-associated glutamate (E)-Rich protein (SPEER). Three members were chosen for more detailed characterization: SPEER-1 (pseudogene), SPEER-2, and SPEER-4D. All three are expressed tissue specifically in the testis of mice, with only very weak expression evident in the rat testis but in no other species tested. Using reverse transcription-polymerase chain reaction (RT-PCR), all three transcripts can be detected also in the epididymis, presumably due to the presence of spermatozoa. All three transcripts are expressed to high levels in haploid germ cells at the spermatocyte-spermatid transition. SPEER-1 mRNA is present in the cytoplasm as a sense transcript, SPEER-2 appears to be made mostly as an antisense transcript, whereas SPEER-4D appears to be localized within a subcellular compartment as a conventional sense transcript. Codon usage analysis suggests that all but the pseudogenes can be expressed as protein, confirmed for SPEER-2 and SPEER-4D by in vitro transcription/translation. An antibody raised against a peptide region of SPEER-4D, which probably cross-reacts with other SPEER members, immunohistochemically stains the nuclei of early round spermatids. While there are no true homologies to other proteins in the genome databases, some motifs are present that suggest a relationship to nuclear matrix proteins, implying that the SPEER family is a new group of haploid sperm-specific nuclear factors.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Cell Nucleus - genetics</subject><subject>Cloning, Molecular</subject><subject>Computational Biology</subject><subject>DNA Primers</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Regulation - genetics</subject><subject>Gene Expression Regulation - physiology</subject><subject>Hormone metabolism and regulation</subject><subject>In Situ Hybridization</subject><subject>Male</subject><subject>Mammalian male genital system</subject><subject>Meiosis - physiology</subject><subject>Mice</subject><subject>Molecular Sequence Data</subject><subject>Nuclear Proteins - biosynthesis</subject><subject>Nuclear Proteins - genetics</subject><subject>Open Reading Frames - genetics</subject><subject>Protein Biosynthesis - genetics</subject><subject>Protein Structure, Secondary - physiology</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Seminal Plasma Proteins - biosynthesis</subject><subject>Seminal Plasma Proteins - genetics</subject><subject>Testis - physiology</subject><subject>Vertebrates: reproduction</subject><issn>0006-3363</issn><issn>1529-7268</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1Lw0AQhhdRbK3-BdmLYg9pZ7-ySXsqpVWhWLG9h81mopF8mW2R_nsXrHr0MLwD87zDO0PImMGIgRRjAAgDIUJxxwHEEMLIN1JONrOn5Xo75CMYzddTfkL6TPE40DyMTkn_19UjF869AzApuDgnPcZDCIXSfTLdPC8WLxM6ozV-0txURXmgTU536HaFC1yLtsgLS1-xRkfzrqno7g1p1ewdXpKz3JQOr446INvlYjt_CFbr-8f5bBW0jCkdIKQ6TYFHaFUkM4NoLHCtssyXMZphhExaPxIZ5HGsbI6WhSilzlQmxYDcfq9tu-Zj73MlVeEslqWp0cdItBDAhY7_BVmk48jf7cHrI7hPK8yStisq0x2Sn7d44OYIGGdNmXemtoX74xRTAjQTX-04dPM</recordid><startdate>200306</startdate><enddate>200306</enddate><creator>SPIESS, Andrej-Nikolai</creator><creator>WALTHER, Norbert</creator><creator>MÜLLER, Nadine</creator><creator>BALVERS, Marga</creator><creator>HANSIS, Christoph</creator><creator>IVELL, Richard</creator><general>Society for the Study of Reproduction</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200306</creationdate><title>SPEER: A new family of testis-specific genes from the mouse</title><author>SPIESS, Andrej-Nikolai ; WALTHER, Norbert ; MÜLLER, Nadine ; BALVERS, Marga ; HANSIS, Christoph ; IVELL, Richard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p1157-e0b7bb028ec584daeeac0275dd75daa71e8e14c84d3d0f995cfec16e447d5d43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Cell Nucleus - genetics</topic><topic>Cloning, Molecular</topic><topic>Computational Biology</topic><topic>DNA Primers</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Regulation - genetics</topic><topic>Gene Expression Regulation - physiology</topic><topic>Hormone metabolism and regulation</topic><topic>In Situ Hybridization</topic><topic>Male</topic><topic>Mammalian male genital system</topic><topic>Meiosis - physiology</topic><topic>Mice</topic><topic>Molecular Sequence Data</topic><topic>Nuclear Proteins - biosynthesis</topic><topic>Nuclear Proteins - genetics</topic><topic>Open Reading Frames - genetics</topic><topic>Protein Biosynthesis - genetics</topic><topic>Protein Structure, Secondary - physiology</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Seminal Plasma Proteins - biosynthesis</topic><topic>Seminal Plasma Proteins - genetics</topic><topic>Testis - physiology</topic><topic>Vertebrates: reproduction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>SPIESS, Andrej-Nikolai</creatorcontrib><creatorcontrib>WALTHER, Norbert</creatorcontrib><creatorcontrib>MÜLLER, Nadine</creatorcontrib><creatorcontrib>BALVERS, Marga</creatorcontrib><creatorcontrib>HANSIS, Christoph</creatorcontrib><creatorcontrib>IVELL, Richard</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Biology of reproduction</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>SPIESS, Andrej-Nikolai</au><au>WALTHER, Norbert</au><au>MÜLLER, Nadine</au><au>BALVERS, Marga</au><au>HANSIS, Christoph</au><au>IVELL, Richard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SPEER: A new family of testis-specific genes from the mouse</atitle><jtitle>Biology of reproduction</jtitle><addtitle>Biol Reprod</addtitle><date>2003-06</date><risdate>2003</risdate><volume>68</volume><issue>6</issue><spage>2044</spage><epage>2054</epage><pages>2044-2054</pages><issn>0006-3363</issn><eissn>1529-7268</eissn><coden>BIREBV</coden><abstract>Differential cloning revealed a partial mRNA sequence expressed in the mouse testis, which on further molecular characterization proved to be a member of a new family of 14 transcribed genes. Six of the genes appear to be expressed pseudogenes. The remainder indicate an open reading frame of approximately 200-220 amino acids encoding proteins with a very high proportion of alpha helical secondary structure, comprising approximately 15% glutamate residues. Because of this property, the family has been named SPErm-associated glutamate (E)-Rich protein (SPEER). Three members were chosen for more detailed characterization: SPEER-1 (pseudogene), SPEER-2, and SPEER-4D. All three are expressed tissue specifically in the testis of mice, with only very weak expression evident in the rat testis but in no other species tested. Using reverse transcription-polymerase chain reaction (RT-PCR), all three transcripts can be detected also in the epididymis, presumably due to the presence of spermatozoa. All three transcripts are expressed to high levels in haploid germ cells at the spermatocyte-spermatid transition. SPEER-1 mRNA is present in the cytoplasm as a sense transcript, SPEER-2 appears to be made mostly as an antisense transcript, whereas SPEER-4D appears to be localized within a subcellular compartment as a conventional sense transcript. Codon usage analysis suggests that all but the pseudogenes can be expressed as protein, confirmed for SPEER-2 and SPEER-4D by in vitro transcription/translation. An antibody raised against a peptide region of SPEER-4D, which probably cross-reacts with other SPEER members, immunohistochemically stains the nuclei of early round spermatids. While there are no true homologies to other proteins in the genome databases, some motifs are present that suggest a relationship to nuclear matrix proteins, implying that the SPEER family is a new group of haploid sperm-specific nuclear factors.</abstract><cop>Madison, WI</cop><pub>Society for the Study of Reproduction</pub><pmid>12606357</pmid><doi>10.1043/0006-3363(2003)068(2044:SANFOT)2.0.CO;2</doi><tpages>11</tpages></addata></record> |
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source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; BioOne Complete; Oxford University Press Journals All Titles (1996-Current) |
subjects | Amino Acid Sequence Animals Biological and medical sciences Cell Nucleus - genetics Cloning, Molecular Computational Biology DNA Primers Fundamental and applied biological sciences. Psychology Gene Expression Regulation - genetics Gene Expression Regulation - physiology Hormone metabolism and regulation In Situ Hybridization Male Mammalian male genital system Meiosis - physiology Mice Molecular Sequence Data Nuclear Proteins - biosynthesis Nuclear Proteins - genetics Open Reading Frames - genetics Protein Biosynthesis - genetics Protein Structure, Secondary - physiology Reverse Transcriptase Polymerase Chain Reaction Seminal Plasma Proteins - biosynthesis Seminal Plasma Proteins - genetics Testis - physiology Vertebrates: reproduction |
title | SPEER: A new family of testis-specific genes from the mouse |
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