Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea
1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea 2 Korean Agricultural Culture Collection (KACC), Metabolic Engineering Division, National Institute of Agricultural Biot...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2003-01, Vol.53 (1), p.21-27 |
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| creator | Kwon, Soon Wo Kim, Jong Shik Park, In Cheol Yoon, Sang Hong Park, Duck Hwan Lim, Chun Keun Go, Seung Joo |
| description | 1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
2 Korean Agricultural Culture Collection (KACC), Metabolic Engineering Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
4 Korean Agricultural Culture Collection (KACC), Molecular Physiology Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
3 College of Agriculture and Life Sciences, 192-1, Hyoja2-Dong, Chunchon 200-701, Korea
Correspondence Soon Wo Kwon swkwon{at}rda.go.kr
Among Pseudomonas strains isolated from Korean agricultural soils, four strains (Ps 9-14 group: Ps 1-2, Ps 1-10, Ps 5-5 and Ps 9-14 T ) from the Suwon, Goesan and Samchok regions, three strains (Ps 3-10 group: Ps 2-22, Ps 3-1 and Ps 3-10 T ) from Umsong Region and four strains (Pss 26 group: Pss 14, Pss 25, Pss 26 T and Pss 27) from Jinju Region were identified as three independent groups on the basis of 16S rDNA sequence analysis. While, on the basis of 16S rDNA sequence analysis, Ps 9-14 T and Ps 3-10 T form a phyletic line with Pseudomonas jessenii CIP 105274 T , Pseudomonas pavonaceae IAM 1155 and Pseudomonas graminis DSM 11363 T , Pss 26 T is grouped with Pseudomonas citronellolis ATCC 13674 T and Pseudomonas nitroreducens IAM 1439 T . According to DNADNA hybridization studies, strain Ps 9-14 T shows high DNA relatedness to strain Ps 3-10 T (52 %) and Pseudomonas migulae CIP 105470 T (49 %) and strain Ps 3-10 T reveals high relatedness to strain Ps 9-14 T (48 %) and P. jessenii CIP 105274 T (45 %). Strain Pss 26 T shows high relatedness to P. citronellolis LMG 18378 T (54 %), P. nitroreducens ATCC 33634 T (48 %) and Pseudomonas aeruginosa LMG 1242 T (48 %). On the basis of phenotypic and genotypic analyses, three novel species of the genus Pseudomonas are proposed: Pseudomonas koreensis sp. nov. (type strain Ps 9-14 T =LMG 21318 T =KACC 10848 T ) for the Ps 9-14 group, Pseudomonas umsongensis sp. nov. (type strain Ps 3-10 T =LMG 21317 T =KACC 10847 T ) for the Ps 3-10 group and Pseudomonas jinjuensis sp. nov. (type strain Pss 26 T =LMG 21316 T =KACC 10760 T ) for the Pss 26 group.
Abbreviations: PAF, Pseudomonas agar F; TSA, trypticase soy agar
The GenBank accession numbers for the 16S rDNA sequences described in this work are AF468448 AF468453 , as indicated in Fig. 2.
A 16 |
| doi_str_mv | 10.1099/ijs.0.02326-0 |
| format | Article |
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2 Korean Agricultural Culture Collection (KACC), Metabolic Engineering Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
4 Korean Agricultural Culture Collection (KACC), Molecular Physiology Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
3 College of Agriculture and Life Sciences, 192-1, Hyoja2-Dong, Chunchon 200-701, Korea
Correspondence Soon Wo Kwon swkwon{at}rda.go.kr
Among Pseudomonas strains isolated from Korean agricultural soils, four strains (Ps 9-14 group: Ps 1-2, Ps 1-10, Ps 5-5 and Ps 9-14 T ) from the Suwon, Goesan and Samchok regions, three strains (Ps 3-10 group: Ps 2-22, Ps 3-1 and Ps 3-10 T ) from Umsong Region and four strains (Pss 26 group: Pss 14, Pss 25, Pss 26 T and Pss 27) from Jinju Region were identified as three independent groups on the basis of 16S rDNA sequence analysis. While, on the basis of 16S rDNA sequence analysis, Ps 9-14 T and Ps 3-10 T form a phyletic line with Pseudomonas jessenii CIP 105274 T , Pseudomonas pavonaceae IAM 1155 and Pseudomonas graminis DSM 11363 T , Pss 26 T is grouped with Pseudomonas citronellolis ATCC 13674 T and Pseudomonas nitroreducens IAM 1439 T . According to DNADNA hybridization studies, strain Ps 9-14 T shows high DNA relatedness to strain Ps 3-10 T (52 %) and Pseudomonas migulae CIP 105470 T (49 %) and strain Ps 3-10 T reveals high relatedness to strain Ps 9-14 T (48 %) and P. jessenii CIP 105274 T (45 %). Strain Pss 26 T shows high relatedness to P. citronellolis LMG 18378 T (54 %), P. nitroreducens ATCC 33634 T (48 %) and Pseudomonas aeruginosa LMG 1242 T (48 %). On the basis of phenotypic and genotypic analyses, three novel species of the genus Pseudomonas are proposed: Pseudomonas koreensis sp. nov. (type strain Ps 9-14 T =LMG 21318 T =KACC 10848 T ) for the Ps 9-14 group, Pseudomonas umsongensis sp. nov. (type strain Ps 3-10 T =LMG 21317 T =KACC 10847 T ) for the Ps 3-10 group and Pseudomonas jinjuensis sp. nov. (type strain Pss 26 T =LMG 21316 T =KACC 10760 T ) for the Pss 26 group.
Abbreviations: PAF, Pseudomonas agar F; TSA, trypticase soy agar
The GenBank accession numbers for the 16S rDNA sequences described in this work are AF468448 AF468453 , as indicated in Fig. 2.
A 16S rDNA-based phylogenetic tree containing additional reference sequences is available as supplementary data in IJSEM Online ( http://ijs.sgmjournals.org/ ).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.02326-0</identifier><identifier>PMID: 12656147</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Agriculture ; Bacteriology ; Biological and medical sciences ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Korea ; Microbiology ; Microscopy, Electron ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Phylogeny ; Pseudomonas - classification ; Pseudomonas - genetics ; Pseudomonas - isolation & purification ; Pseudomonas - metabolism ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Soil Microbiology ; Species Specificity ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2003-01, Vol.53 (1), p.21-27</ispartof><rights>2003 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c420t-5654df0007f046186f60b1fc813f607ac45ca14fda54dead4ab41de8570993fa3</citedby><cites>FETCH-LOGICAL-c420t-5654df0007f046186f60b1fc813f607ac45ca14fda54dead4ab41de8570993fa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,3747,3748,4025,27928,27929,27930</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14528817$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12656147$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kwon, Soon Wo</creatorcontrib><creatorcontrib>Kim, Jong Shik</creatorcontrib><creatorcontrib>Park, In Cheol</creatorcontrib><creatorcontrib>Yoon, Sang Hong</creatorcontrib><creatorcontrib>Park, Duck Hwan</creatorcontrib><creatorcontrib>Lim, Chun Keun</creatorcontrib><creatorcontrib>Go, Seung Joo</creatorcontrib><title>Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
2 Korean Agricultural Culture Collection (KACC), Metabolic Engineering Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
4 Korean Agricultural Culture Collection (KACC), Molecular Physiology Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
3 College of Agriculture and Life Sciences, 192-1, Hyoja2-Dong, Chunchon 200-701, Korea
Correspondence Soon Wo Kwon swkwon{at}rda.go.kr
Among Pseudomonas strains isolated from Korean agricultural soils, four strains (Ps 9-14 group: Ps 1-2, Ps 1-10, Ps 5-5 and Ps 9-14 T ) from the Suwon, Goesan and Samchok regions, three strains (Ps 3-10 group: Ps 2-22, Ps 3-1 and Ps 3-10 T ) from Umsong Region and four strains (Pss 26 group: Pss 14, Pss 25, Pss 26 T and Pss 27) from Jinju Region were identified as three independent groups on the basis of 16S rDNA sequence analysis. While, on the basis of 16S rDNA sequence analysis, Ps 9-14 T and Ps 3-10 T form a phyletic line with Pseudomonas jessenii CIP 105274 T , Pseudomonas pavonaceae IAM 1155 and Pseudomonas graminis DSM 11363 T , Pss 26 T is grouped with Pseudomonas citronellolis ATCC 13674 T and Pseudomonas nitroreducens IAM 1439 T . According to DNADNA hybridization studies, strain Ps 9-14 T shows high DNA relatedness to strain Ps 3-10 T (52 %) and Pseudomonas migulae CIP 105470 T (49 %) and strain Ps 3-10 T reveals high relatedness to strain Ps 9-14 T (48 %) and P. jessenii CIP 105274 T (45 %). Strain Pss 26 T shows high relatedness to P. citronellolis LMG 18378 T (54 %), P. nitroreducens ATCC 33634 T (48 %) and Pseudomonas aeruginosa LMG 1242 T (48 %). On the basis of phenotypic and genotypic analyses, three novel species of the genus Pseudomonas are proposed: Pseudomonas koreensis sp. nov. (type strain Ps 9-14 T =LMG 21318 T =KACC 10848 T ) for the Ps 9-14 group, Pseudomonas umsongensis sp. nov. (type strain Ps 3-10 T =LMG 21317 T =KACC 10847 T ) for the Ps 3-10 group and Pseudomonas jinjuensis sp. nov. (type strain Pss 26 T =LMG 21316 T =KACC 10760 T ) for the Pss 26 group.
Abbreviations: PAF, Pseudomonas agar F; TSA, trypticase soy agar
The GenBank accession numbers for the 16S rDNA sequences described in this work are AF468448 AF468453 , as indicated in Fig. 2.
A 16S rDNA-based phylogenetic tree containing additional reference sequences is available as supplementary data in IJSEM Online ( http://ijs.sgmjournals.org/ ).</description><subject>Agriculture</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Korea</subject><subject>Microbiology</subject><subject>Microscopy, Electron</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogeny</subject><subject>Pseudomonas - classification</subject><subject>Pseudomonas - genetics</subject><subject>Pseudomonas - isolation & purification</subject><subject>Pseudomonas - metabolism</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Soil Microbiology</subject><subject>Species Specificity</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1P3DAQhi1UVCjtkSvyBU5NmIkdJ3usUL9UJDjQs-V1bPCS2FsPoeI_9EfXwKp8XHqxx_ajd0Z-GNtHqBEWi-OwohpqaESjKthiuyiVqloQ8s2_ulE77B3RCqBcALxlO9ioVqHsdtmfc3LzkKYUDfHrlJ2LFIjTuuYx3dYf-fP3eaIUL18S3MThBbQKcTW_TimrG8vZ2eCI-5wm7k2eOKUwEg-R_yitzXu27c1I7sNm32M_v3y-OPlWnZ59_X7y6bSysoGbqlWtHDwAdB6kwl55BUv0tkdRqs5Y2VqD0g-mcM4M0iwlDq5vu_Jhwhuxx44ec9c5_Zod3egpkHXjaKJLM-lOoFDYdf8Fse-UWCgsYPUI2pyIsvN6ncNk8p1G0PeedPGkQT940lD4g03wvJzc8ERvxBTgcAMYsmb02UQb6ImTbdP3-GzCq3B59Ttkp4ufKZQxliHdN22FRt2g-AswG6p5</recordid><startdate>20030101</startdate><enddate>20030101</enddate><creator>Kwon, Soon Wo</creator><creator>Kim, Jong Shik</creator><creator>Park, In Cheol</creator><creator>Yoon, Sang Hong</creator><creator>Park, Duck Hwan</creator><creator>Lim, Chun Keun</creator><creator>Go, Seung Joo</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20030101</creationdate><title>Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea</title><author>Kwon, Soon Wo ; Kim, Jong Shik ; Park, In Cheol ; Yoon, Sang Hong ; Park, Duck Hwan ; Lim, Chun Keun ; Go, Seung Joo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-5654df0007f046186f60b1fc813f607ac45ca14fda54dead4ab41de8570993fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Agriculture</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Korea</topic><topic>Microbiology</topic><topic>Microscopy, Electron</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Hybridization</topic><topic>Phylogeny</topic><topic>Pseudomonas - classification</topic><topic>Pseudomonas - genetics</topic><topic>Pseudomonas - isolation & purification</topic><topic>Pseudomonas - metabolism</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Soil Microbiology</topic><topic>Species Specificity</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kwon, Soon Wo</creatorcontrib><creatorcontrib>Kim, Jong Shik</creatorcontrib><creatorcontrib>Park, In Cheol</creatorcontrib><creatorcontrib>Yoon, Sang Hong</creatorcontrib><creatorcontrib>Park, Duck Hwan</creatorcontrib><creatorcontrib>Lim, Chun Keun</creatorcontrib><creatorcontrib>Go, Seung Joo</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kwon, Soon Wo</au><au>Kim, Jong Shik</au><au>Park, In Cheol</au><au>Yoon, Sang Hong</au><au>Park, Duck Hwan</au><au>Lim, Chun Keun</au><au>Go, Seung Joo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2003-01-01</date><risdate>2003</risdate><volume>53</volume><issue>1</issue><spage>21</spage><epage>27</epage><pages>21-27</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
2 Korean Agricultural Culture Collection (KACC), Metabolic Engineering Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
4 Korean Agricultural Culture Collection (KACC), Molecular Physiology Division, National Institute of Agricultural Biotechnology, 225th, Seodun-dong Gwonseon-gu, Suwon 441-707, Korea
3 College of Agriculture and Life Sciences, 192-1, Hyoja2-Dong, Chunchon 200-701, Korea
Correspondence Soon Wo Kwon swkwon{at}rda.go.kr
Among Pseudomonas strains isolated from Korean agricultural soils, four strains (Ps 9-14 group: Ps 1-2, Ps 1-10, Ps 5-5 and Ps 9-14 T ) from the Suwon, Goesan and Samchok regions, three strains (Ps 3-10 group: Ps 2-22, Ps 3-1 and Ps 3-10 T ) from Umsong Region and four strains (Pss 26 group: Pss 14, Pss 25, Pss 26 T and Pss 27) from Jinju Region were identified as three independent groups on the basis of 16S rDNA sequence analysis. While, on the basis of 16S rDNA sequence analysis, Ps 9-14 T and Ps 3-10 T form a phyletic line with Pseudomonas jessenii CIP 105274 T , Pseudomonas pavonaceae IAM 1155 and Pseudomonas graminis DSM 11363 T , Pss 26 T is grouped with Pseudomonas citronellolis ATCC 13674 T and Pseudomonas nitroreducens IAM 1439 T . According to DNADNA hybridization studies, strain Ps 9-14 T shows high DNA relatedness to strain Ps 3-10 T (52 %) and Pseudomonas migulae CIP 105470 T (49 %) and strain Ps 3-10 T reveals high relatedness to strain Ps 9-14 T (48 %) and P. jessenii CIP 105274 T (45 %). Strain Pss 26 T shows high relatedness to P. citronellolis LMG 18378 T (54 %), P. nitroreducens ATCC 33634 T (48 %) and Pseudomonas aeruginosa LMG 1242 T (48 %). On the basis of phenotypic and genotypic analyses, three novel species of the genus Pseudomonas are proposed: Pseudomonas koreensis sp. nov. (type strain Ps 9-14 T =LMG 21318 T =KACC 10848 T ) for the Ps 9-14 group, Pseudomonas umsongensis sp. nov. (type strain Ps 3-10 T =LMG 21317 T =KACC 10847 T ) for the Ps 3-10 group and Pseudomonas jinjuensis sp. nov. (type strain Pss 26 T =LMG 21316 T =KACC 10760 T ) for the Pss 26 group.
Abbreviations: PAF, Pseudomonas agar F; TSA, trypticase soy agar
The GenBank accession numbers for the 16S rDNA sequences described in this work are AF468448 AF468453 , as indicated in Fig. 2.
A 16S rDNA-based phylogenetic tree containing additional reference sequences is available as supplementary data in IJSEM Online ( http://ijs.sgmjournals.org/ ).</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>12656147</pmid><doi>10.1099/ijs.0.02326-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Agriculture Bacteriology Biological and medical sciences DNA, Bacterial - genetics DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Korea Microbiology Microscopy, Electron Molecular Sequence Data Nucleic Acid Hybridization Phylogeny Pseudomonas - classification Pseudomonas - genetics Pseudomonas - isolation & purification Pseudomonas - metabolism RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Soil Microbiology Species Specificity Systematics |
| title | Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea |
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