Predictive crystallization of ribonuclease A via rapid screening of osmotic second virial coefficients
Important progress has been made in recent years toward developing a molecular‐level understanding of protein phase behavior in terms of the osmotic second virial coefficient, a thermodynamic parameter that characterizes pairwise protein interactions. Yet there has been little practical application...
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Veröffentlicht in: | Proteins, structure, function, and bioinformatics structure, function, and bioinformatics, 2003-02, Vol.50 (2), p.303-311 |
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description | Important progress has been made in recent years toward developing a molecular‐level understanding of protein phase behavior in terms of the osmotic second virial coefficient, a thermodynamic parameter that characterizes pairwise protein interactions. Yet there has been little practical application of this knowledge to the field of protein crystallization, largely because of the difficult and time‐consuming nature of traditional techniques for characterizing protein interactions. Self‐interaction chromatography has recently been proposed as a highly efficient method for measuring the osmotic second virial coefficient. The utility of the technique is examined in this work by characterizing virial coefficients for ribonuclease A under 59 solution conditions using several crystallization additives, including PEG, sodium chloride, ammonium sulfate, and propanol. The virial coefficient measurements show some counterintuitive trends and shed light on the previous difficulties in crystallizing ribonuclease A. Crystallization experiments at the corresponding solution conditions were conducted by using ultracentrifugal crystallization. Using this methodology, ribonuclease A crystals were obtained under conditions for which the virial coefficients fell within the “crystallization slot.” Crystallographic characterization showed that the crystals diffract to high resolution. Metastable crystals were also obtained for conditions outside, but near, the “crystallization slot,” and they could also be frozen and used to collect structural information. Proteins 2003;50:303–311. © 2002 Wiley‐Liss, Inc. |
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Yet there has been little practical application of this knowledge to the field of protein crystallization, largely because of the difficult and time‐consuming nature of traditional techniques for characterizing protein interactions. Self‐interaction chromatography has recently been proposed as a highly efficient method for measuring the osmotic second virial coefficient. The utility of the technique is examined in this work by characterizing virial coefficients for ribonuclease A under 59 solution conditions using several crystallization additives, including PEG, sodium chloride, ammonium sulfate, and propanol. The virial coefficient measurements show some counterintuitive trends and shed light on the previous difficulties in crystallizing ribonuclease A. Crystallization experiments at the corresponding solution conditions were conducted by using ultracentrifugal crystallization. Using this methodology, ribonuclease A crystals were obtained under conditions for which the virial coefficients fell within the “crystallization slot.” Crystallographic characterization showed that the crystals diffract to high resolution. Metastable crystals were also obtained for conditions outside, but near, the “crystallization slot,” and they could also be frozen and used to collect structural information. Proteins 2003;50:303–311. © 2002 Wiley‐Liss, Inc.</description><identifier>ISSN: 0887-3585</identifier><identifier>EISSN: 1097-0134</identifier><identifier>DOI: 10.1002/prot.10249</identifier><identifier>PMID: 12486724</identifier><language>eng</language><publisher>New York: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>1-Propanol ; Ammonium Sulfate ; Chromatography ; Crystallization - methods ; Enzymes, Immobilized - chemistry ; Hydrogen-Ion Concentration ; Osmolar Concentration ; Polyethylene Glycols ; protein interactions ; Ribonuclease, Pancreatic - chemistry ; self-interaction chromatography ; Sodium Chloride ; Solutions - chemistry ; static light scattering ; ultracentrifugal crystallization ; Ultracentrifugation ; X-Ray Diffraction</subject><ispartof>Proteins, structure, function, and bioinformatics, 2003-02, Vol.50 (2), p.303-311</ispartof><rights>Copyright © 2002 Wiley‐Liss, Inc.</rights><rights>Copyright 2002 Wiley-Liss, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4609-4d474ab083eb0c6b04e7bcf66e47e4e75e5b763c4cd0f77e648f34d8444497ed3</citedby><cites>FETCH-LOGICAL-c4609-4d474ab083eb0c6b04e7bcf66e47e4e75e5b763c4cd0f77e648f34d8444497ed3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fprot.10249$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fprot.10249$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12486724$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tessier, Peter M.</creatorcontrib><creatorcontrib>Johnson, Harvey R.</creatorcontrib><creatorcontrib>Pazhianur, Rajesh</creatorcontrib><creatorcontrib>Berger, Bryan W.</creatorcontrib><creatorcontrib>Prentice, Jessica L.</creatorcontrib><creatorcontrib>Bahnson, Brian J.</creatorcontrib><creatorcontrib>Sandler, Stanley I.</creatorcontrib><creatorcontrib>Lenhoff, Abraham M.</creatorcontrib><title>Predictive crystallization of ribonuclease A via rapid screening of osmotic second virial coefficients</title><title>Proteins, structure, function, and bioinformatics</title><addtitle>Proteins</addtitle><description>Important progress has been made in recent years toward developing a molecular‐level understanding of protein phase behavior in terms of the osmotic second virial coefficient, a thermodynamic parameter that characterizes pairwise protein interactions. Yet there has been little practical application of this knowledge to the field of protein crystallization, largely because of the difficult and time‐consuming nature of traditional techniques for characterizing protein interactions. Self‐interaction chromatography has recently been proposed as a highly efficient method for measuring the osmotic second virial coefficient. The utility of the technique is examined in this work by characterizing virial coefficients for ribonuclease A under 59 solution conditions using several crystallization additives, including PEG, sodium chloride, ammonium sulfate, and propanol. The virial coefficient measurements show some counterintuitive trends and shed light on the previous difficulties in crystallizing ribonuclease A. Crystallization experiments at the corresponding solution conditions were conducted by using ultracentrifugal crystallization. Using this methodology, ribonuclease A crystals were obtained under conditions for which the virial coefficients fell within the “crystallization slot.” Crystallographic characterization showed that the crystals diffract to high resolution. Metastable crystals were also obtained for conditions outside, but near, the “crystallization slot,” and they could also be frozen and used to collect structural information. Proteins 2003;50:303–311. © 2002 Wiley‐Liss, Inc.</description><subject>1-Propanol</subject><subject>Ammonium Sulfate</subject><subject>Chromatography</subject><subject>Crystallization - methods</subject><subject>Enzymes, Immobilized - chemistry</subject><subject>Hydrogen-Ion Concentration</subject><subject>Osmolar Concentration</subject><subject>Polyethylene Glycols</subject><subject>protein interactions</subject><subject>Ribonuclease, Pancreatic - chemistry</subject><subject>self-interaction chromatography</subject><subject>Sodium Chloride</subject><subject>Solutions - chemistry</subject><subject>static light scattering</subject><subject>ultracentrifugal crystallization</subject><subject>Ultracentrifugation</subject><subject>X-Ray Diffraction</subject><issn>0887-3585</issn><issn>1097-0134</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDtPwzAUhS0EgvJY-AHIEwNSwIkd2xkB8ZLKQwjEaDnONTKkcbFToPx6XFpgg7vcM3znDB9C2znZzwkpDsbB9ykVrFpCg5xUIiM5ZctoQKQUGS1luYbWY3wihPCK8lW0lhdMclGwAbI3ARpnevcK2IRp7HXbug_dO99hb3Fwte8mpgUdAR_iV6dx0GPX4GgCQOe6xxnl48j3zuAIxndNooLTLTYerHXGQdfHTbRidRtha_E30P3pyd3xeTa8Prs4PhxmhnFSZaxhgumaSAo1MbwmDERtLOfABKRcQlkLTg0zDbFCAGfSUtZIlq4S0NANtDvfTU5eJhB7NXLRQNvqDvwkKlHI5ESU_4K55JIILhO4NwdN8DEGsGoc3EiHqcqJmulXM_3qS3-Cdxark3oEzS-68J2AfA68uRamf0ypm9vru-_RbN5xsYf3n44Oz4oLKkr1cHWmhuXDEb0dXqor-gnXDKFP</recordid><startdate>20030201</startdate><enddate>20030201</enddate><creator>Tessier, Peter M.</creator><creator>Johnson, Harvey R.</creator><creator>Pazhianur, Rajesh</creator><creator>Berger, Bryan W.</creator><creator>Prentice, Jessica L.</creator><creator>Bahnson, Brian J.</creator><creator>Sandler, Stanley I.</creator><creator>Lenhoff, Abraham M.</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>7X8</scope></search><sort><creationdate>20030201</creationdate><title>Predictive crystallization of ribonuclease A via rapid screening of osmotic second virial coefficients</title><author>Tessier, Peter M. ; Johnson, Harvey R. ; Pazhianur, Rajesh ; Berger, Bryan W. ; Prentice, Jessica L. ; Bahnson, Brian J. ; Sandler, Stanley I. ; Lenhoff, Abraham M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4609-4d474ab083eb0c6b04e7bcf66e47e4e75e5b763c4cd0f77e648f34d8444497ed3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>1-Propanol</topic><topic>Ammonium Sulfate</topic><topic>Chromatography</topic><topic>Crystallization - methods</topic><topic>Enzymes, Immobilized - chemistry</topic><topic>Hydrogen-Ion Concentration</topic><topic>Osmolar Concentration</topic><topic>Polyethylene Glycols</topic><topic>protein interactions</topic><topic>Ribonuclease, Pancreatic - chemistry</topic><topic>self-interaction chromatography</topic><topic>Sodium Chloride</topic><topic>Solutions - chemistry</topic><topic>static light scattering</topic><topic>ultracentrifugal crystallization</topic><topic>Ultracentrifugation</topic><topic>X-Ray Diffraction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tessier, Peter M.</creatorcontrib><creatorcontrib>Johnson, Harvey R.</creatorcontrib><creatorcontrib>Pazhianur, Rajesh</creatorcontrib><creatorcontrib>Berger, Bryan W.</creatorcontrib><creatorcontrib>Prentice, Jessica L.</creatorcontrib><creatorcontrib>Bahnson, Brian J.</creatorcontrib><creatorcontrib>Sandler, Stanley I.</creatorcontrib><creatorcontrib>Lenhoff, Abraham M.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Proteins, structure, function, and bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tessier, Peter M.</au><au>Johnson, Harvey R.</au><au>Pazhianur, Rajesh</au><au>Berger, Bryan W.</au><au>Prentice, Jessica L.</au><au>Bahnson, Brian J.</au><au>Sandler, Stanley I.</au><au>Lenhoff, Abraham M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Predictive crystallization of ribonuclease A via rapid screening of osmotic second virial coefficients</atitle><jtitle>Proteins, structure, function, and bioinformatics</jtitle><addtitle>Proteins</addtitle><date>2003-02-01</date><risdate>2003</risdate><volume>50</volume><issue>2</issue><spage>303</spage><epage>311</epage><pages>303-311</pages><issn>0887-3585</issn><eissn>1097-0134</eissn><abstract>Important progress has been made in recent years toward developing a molecular‐level understanding of protein phase behavior in terms of the osmotic second virial coefficient, a thermodynamic parameter that characterizes pairwise protein interactions. Yet there has been little practical application of this knowledge to the field of protein crystallization, largely because of the difficult and time‐consuming nature of traditional techniques for characterizing protein interactions. Self‐interaction chromatography has recently been proposed as a highly efficient method for measuring the osmotic second virial coefficient. The utility of the technique is examined in this work by characterizing virial coefficients for ribonuclease A under 59 solution conditions using several crystallization additives, including PEG, sodium chloride, ammonium sulfate, and propanol. The virial coefficient measurements show some counterintuitive trends and shed light on the previous difficulties in crystallizing ribonuclease A. Crystallization experiments at the corresponding solution conditions were conducted by using ultracentrifugal crystallization. Using this methodology, ribonuclease A crystals were obtained under conditions for which the virial coefficients fell within the “crystallization slot.” Crystallographic characterization showed that the crystals diffract to high resolution. Metastable crystals were also obtained for conditions outside, but near, the “crystallization slot,” and they could also be frozen and used to collect structural information. Proteins 2003;50:303–311. © 2002 Wiley‐Liss, Inc.</abstract><cop>New York</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>12486724</pmid><doi>10.1002/prot.10249</doi><tpages>9</tpages></addata></record> |
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subjects | 1-Propanol Ammonium Sulfate Chromatography Crystallization - methods Enzymes, Immobilized - chemistry Hydrogen-Ion Concentration Osmolar Concentration Polyethylene Glycols protein interactions Ribonuclease, Pancreatic - chemistry self-interaction chromatography Sodium Chloride Solutions - chemistry static light scattering ultracentrifugal crystallization Ultracentrifugation X-Ray Diffraction |
title | Predictive crystallization of ribonuclease A via rapid screening of osmotic second virial coefficients |
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