The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: Current perspectives and a new unifying nomenclature
The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a lar...
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description | The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development. |
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(Cornell Univ., New York (USA)) ; Braam, J ; Fry, S.C ; Nishitani, K</creator><creatorcontrib>Rose, J.K.C. (Cornell Univ., New York (USA)) ; Braam, J ; Fry, S.C ; Nishitani, K</creatorcontrib><description>The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development.</description><identifier>ISSN: 0032-0781</identifier><identifier>EISSN: 1471-9053</identifier><identifier>DOI: 10.1093/pcp/pcf171</identifier><identifier>PMID: 12514239</identifier><language>eng</language><publisher>Japan: Oxford University Press</publisher><subject>Ara ; ARABIDOPSIS ; Arabidopsis - enzymology ; Arabidopsis - genetics ; Arabidopsis - growth & development ; arabinose ; CARBOHYDRATE METABOLISM ; Cell Wall - enzymology ; CELL WALLS ; endo-xyloglucan transferase (one of the previous nomenclatures used for an XTH) ; etc ; Evolution, Molecular ; EXT or EXGT ; formerly xyloglucan endotransglycosylase (one of the previous nomenclatures used for an XTH) — here re-defined as xyloglucan endotransglucosylase (name of one of the two enzyme activities exhibited by XTHs) ; Fuc ; fucose ; Gal ; galactose ; GENE EXPRESSION ; Glc ; Glucans ; glucose ; Glycosyltransferases - genetics ; Glycosyltransferases - metabolism ; Keywords: Cell expansion — Cell wall — Hydrolase — Endotransglucosylase — Xyloglucan ; oligosaccharide-to-oligosaccharide (endotransglucosylation) ; O→O ; Phylogeny ; polysaccharide-to-oligosaccharide (endotransglucosylation) ; polysaccharide-to-polysaccharide (endotransglucosylation) ; POLYSACCHARIDES ; Polysaccharides - metabolism ; P→O ; P→P ; relative molecular mass ; see Fry et al. ; Space life sciences ; specific XGOs (for nomenclature ; Substrate Specificity ; Terminology as Topic ; XEH ; XET ; XET-related (one of the previous nomenclatures used for an XTH) ; XGO ; XLLG ; XTH ; XTR ; XXFG ; XXG ; XXLG ; XXXG ; Xyl ; Xylans ; xyloglucan endohydrolase (name of one of the two enzyme activities exhibited by XTHs) ; xyloglucan endotransglucosylase/hydrolase (name of protein or gene) ; xyloglucan oligosaccharide (general) ; xylose. The suffix “-ol” refers to XGOs that have been reduced</subject><ispartof>Plant and cell physiology, 2002-12, Vol.43 (12), p.1421-1435</ispartof><rights>Copyright Oxford University Press(England) Dec 15, 2002</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c461t-d8e983aa253bfd9a8a7a2f464e2a5c2de20400474dc470d6767a2bb7daa235c73</citedby><cites>FETCH-LOGICAL-c461t-d8e983aa253bfd9a8a7a2f464e2a5c2de20400474dc470d6767a2bb7daa235c73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12514239$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rose, J.K.C. (Cornell Univ., New York (USA))</creatorcontrib><creatorcontrib>Braam, J</creatorcontrib><creatorcontrib>Fry, S.C</creatorcontrib><creatorcontrib>Nishitani, K</creatorcontrib><title>The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: Current perspectives and a new unifying nomenclature</title><title>Plant and cell physiology</title><addtitle>Plant Cell Physiol</addtitle><description>The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development.</description><subject>Ara</subject><subject>ARABIDOPSIS</subject><subject>Arabidopsis - enzymology</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - growth & development</subject><subject>arabinose</subject><subject>CARBOHYDRATE METABOLISM</subject><subject>Cell Wall - enzymology</subject><subject>CELL WALLS</subject><subject>endo-xyloglucan transferase (one of the previous nomenclatures used for an XTH)</subject><subject>etc</subject><subject>Evolution, Molecular</subject><subject>EXT or EXGT</subject><subject>formerly xyloglucan endotransglycosylase (one of the previous nomenclatures used for an XTH) — here re-defined as xyloglucan endotransglucosylase (name of one of the two enzyme activities exhibited by XTHs)</subject><subject>Fuc</subject><subject>fucose</subject><subject>Gal</subject><subject>galactose</subject><subject>GENE EXPRESSION</subject><subject>Glc</subject><subject>Glucans</subject><subject>glucose</subject><subject>Glycosyltransferases - genetics</subject><subject>Glycosyltransferases - metabolism</subject><subject>Keywords: Cell expansion — Cell wall — Hydrolase — Endotransglucosylase — Xyloglucan</subject><subject>oligosaccharide-to-oligosaccharide (endotransglucosylation)</subject><subject>O→O</subject><subject>Phylogeny</subject><subject>polysaccharide-to-oligosaccharide (endotransglucosylation)</subject><subject>polysaccharide-to-polysaccharide (endotransglucosylation)</subject><subject>POLYSACCHARIDES</subject><subject>Polysaccharides - metabolism</subject><subject>P→O</subject><subject>P→P</subject><subject>relative molecular mass</subject><subject>see Fry et al.</subject><subject>Space life sciences</subject><subject>specific XGOs (for nomenclature</subject><subject>Substrate Specificity</subject><subject>Terminology as Topic</subject><subject>XEH</subject><subject>XET</subject><subject>XET-related (one of the previous nomenclatures used for an XTH)</subject><subject>XGO</subject><subject>XLLG</subject><subject>XTH</subject><subject>XTR</subject><subject>XXFG</subject><subject>XXG</subject><subject>XXLG</subject><subject>XXXG</subject><subject>Xyl</subject><subject>Xylans</subject><subject>xyloglucan endohydrolase (name of one of the two enzyme activities exhibited by XTHs)</subject><subject>xyloglucan endotransglucosylase/hydrolase (name of protein or gene)</subject><subject>xyloglucan oligosaccharide (general)</subject><subject>xylose. The suffix “-ol” refers to XGOs that have been reduced</subject><issn>0032-0781</issn><issn>1471-9053</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU-L1DAYh4so7uzqxbsSPOxBqOZfm9abzqrjsqLiiIuXkEnezmZtk5q049ZP4Uc2YwcFISFv-D35EXiy7AHBTwmu2bNe92k3RJBb2YJwQfIaF-x2tsCY0RyLihxlxzFeY5xmhu9mR4QWhFNWL7Jf6ytAl-sValRn2wn5BoH7OXUQkXU73-7ApAHdTK3ftqNWLsXGD0G5uL_7OLVqsN4h5cyf6GoywbdTtPE5Wo4hgBtQDyH2oAe7S7V7UCEHP9DobDNZt0XOd-B0KhoD3MvuNKqNcP9wnmSfX79aL1f5xfs3b5cvLnLNSzLkpoK6YkrRgm0aU6tKCUUbXnKgqtDUAMUcYy640VxgU4oy5ZuNMOkJK7RgJ9np3NsH_32EOMjORg1tqxz4MUpBK8J5WSfw8X_gtR-DS3-TFJOiEAyTBD2ZIR18jAEa2QfbqTBJguVekkyS5CwpwY8OjeOmA_MPPVhJQD4DNg5w8zdX4ZssBROFXF1-le_OX378dFZ8kWeJfzjzjfJSbYON8vwDTfbT4rRivwFWVKmv</recordid><startdate>20021201</startdate><enddate>20021201</enddate><creator>Rose, J.K.C. (Cornell Univ., New York (USA))</creator><creator>Braam, J</creator><creator>Fry, S.C</creator><creator>Nishitani, K</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20021201</creationdate><title>The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: Current perspectives and a new unifying nomenclature</title><author>Rose, J.K.C. (Cornell Univ., New York (USA)) ; Braam, J ; Fry, S.C ; Nishitani, K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c461t-d8e983aa253bfd9a8a7a2f464e2a5c2de20400474dc470d6767a2bb7daa235c73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Ara</topic><topic>ARABIDOPSIS</topic><topic>Arabidopsis - enzymology</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - growth & development</topic><topic>arabinose</topic><topic>CARBOHYDRATE METABOLISM</topic><topic>Cell Wall - enzymology</topic><topic>CELL WALLS</topic><topic>endo-xyloglucan transferase (one of the previous nomenclatures used for an XTH)</topic><topic>etc</topic><topic>Evolution, Molecular</topic><topic>EXT or EXGT</topic><topic>formerly xyloglucan endotransglycosylase (one of the previous nomenclatures used for an XTH) — here re-defined as xyloglucan endotransglucosylase (name of one of the two enzyme activities exhibited by XTHs)</topic><topic>Fuc</topic><topic>fucose</topic><topic>Gal</topic><topic>galactose</topic><topic>GENE EXPRESSION</topic><topic>Glc</topic><topic>Glucans</topic><topic>glucose</topic><topic>Glycosyltransferases - genetics</topic><topic>Glycosyltransferases - metabolism</topic><topic>Keywords: Cell expansion — Cell wall — Hydrolase — Endotransglucosylase — Xyloglucan</topic><topic>oligosaccharide-to-oligosaccharide (endotransglucosylation)</topic><topic>O→O</topic><topic>Phylogeny</topic><topic>polysaccharide-to-oligosaccharide (endotransglucosylation)</topic><topic>polysaccharide-to-polysaccharide (endotransglucosylation)</topic><topic>POLYSACCHARIDES</topic><topic>Polysaccharides - metabolism</topic><topic>P→O</topic><topic>P→P</topic><topic>relative molecular mass</topic><topic>see Fry et al.</topic><topic>Space life sciences</topic><topic>specific XGOs (for nomenclature</topic><topic>Substrate Specificity</topic><topic>Terminology as Topic</topic><topic>XEH</topic><topic>XET</topic><topic>XET-related (one of the previous nomenclatures used for an XTH)</topic><topic>XGO</topic><topic>XLLG</topic><topic>XTH</topic><topic>XTR</topic><topic>XXFG</topic><topic>XXG</topic><topic>XXLG</topic><topic>XXXG</topic><topic>Xyl</topic><topic>Xylans</topic><topic>xyloglucan endohydrolase (name of one of the two enzyme activities exhibited by XTHs)</topic><topic>xyloglucan endotransglucosylase/hydrolase (name of protein or gene)</topic><topic>xyloglucan oligosaccharide (general)</topic><topic>xylose. The suffix “-ol” refers to XGOs that have been reduced</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rose, J.K.C. 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(Cornell Univ., New York (USA))</au><au>Braam, J</au><au>Fry, S.C</au><au>Nishitani, K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: Current perspectives and a new unifying nomenclature</atitle><jtitle>Plant and cell physiology</jtitle><addtitle>Plant Cell Physiol</addtitle><date>2002-12-01</date><risdate>2002</risdate><volume>43</volume><issue>12</issue><spage>1421</spage><epage>1435</epage><pages>1421-1435</pages><issn>0032-0781</issn><eissn>1471-9053</eissn><abstract>The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development.</abstract><cop>Japan</cop><pub>Oxford University Press</pub><pmid>12514239</pmid><doi>10.1093/pcp/pcf171</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Ara ARABIDOPSIS Arabidopsis - enzymology Arabidopsis - genetics Arabidopsis - growth & development arabinose CARBOHYDRATE METABOLISM Cell Wall - enzymology CELL WALLS endo-xyloglucan transferase (one of the previous nomenclatures used for an XTH) etc Evolution, Molecular EXT or EXGT formerly xyloglucan endotransglycosylase (one of the previous nomenclatures used for an XTH) — here re-defined as xyloglucan endotransglucosylase (name of one of the two enzyme activities exhibited by XTHs) Fuc fucose Gal galactose GENE EXPRESSION Glc Glucans glucose Glycosyltransferases - genetics Glycosyltransferases - metabolism Keywords: Cell expansion — Cell wall — Hydrolase — Endotransglucosylase — Xyloglucan oligosaccharide-to-oligosaccharide (endotransglucosylation) O→O Phylogeny polysaccharide-to-oligosaccharide (endotransglucosylation) polysaccharide-to-polysaccharide (endotransglucosylation) POLYSACCHARIDES Polysaccharides - metabolism P→O P→P relative molecular mass see Fry et al. Space life sciences specific XGOs (for nomenclature Substrate Specificity Terminology as Topic XEH XET XET-related (one of the previous nomenclatures used for an XTH) XGO XLLG XTH XTR XXFG XXG XXLG XXXG Xyl Xylans xyloglucan endohydrolase (name of one of the two enzyme activities exhibited by XTHs) xyloglucan endotransglucosylase/hydrolase (name of protein or gene) xyloglucan oligosaccharide (general) xylose. The suffix “-ol” refers to XGOs that have been reduced |
title | The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: Current perspectives and a new unifying nomenclature |
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