Structural Insights into the Avian AICAR Transformylase Mechanism
ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that c...
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Veröffentlicht in: | Biochemistry (Easton) 2002-12, Vol.41 (52), p.15505-15513 |
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creator | Wolan, Dennis W Greasley, Samantha E Beardsley, G. Peter Wilson, Ian A |
description | ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group. |
doi_str_mv | 10.1021/bi020505x |
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Peter ; Wilson, Ian A</creator><creatorcontrib>Wolan, Dennis W ; Greasley, Samantha E ; Beardsley, G. Peter ; Wilson, Ian A</creatorcontrib><description>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</description><identifier>ISSN: 0006-2960</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/bi020505x</identifier><identifier>PMID: 12501179</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Animals ; Binding Sites ; Birds ; Computer Simulation ; Crystallography, X-Ray ; Dimerization ; Enzyme Activation ; Hydroxymethyl and Formyl Transferases - chemistry ; Models, Molecular ; Multienzyme Complexes - chemistry ; Nucleotide Deaminases - chemistry ; Phosphoribosylaminoimidazolecarboxamide Formyltransferase ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Structure-Activity Relationship ; Substrate Specificity</subject><ispartof>Biochemistry (Easton), 2002-12, Vol.41 (52), p.15505-15513</ispartof><rights>Copyright © 2002 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</citedby><cites>FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/bi020505x$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/bi020505x$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2751,27055,27903,27904,56716,56766</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12501179$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wolan, Dennis W</creatorcontrib><creatorcontrib>Greasley, Samantha E</creatorcontrib><creatorcontrib>Beardsley, G. Peter</creatorcontrib><creatorcontrib>Wilson, Ian A</creatorcontrib><title>Structural Insights into the Avian AICAR Transformylase Mechanism</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</description><subject>Animals</subject><subject>Binding Sites</subject><subject>Birds</subject><subject>Computer Simulation</subject><subject>Crystallography, X-Ray</subject><subject>Dimerization</subject><subject>Enzyme Activation</subject><subject>Hydroxymethyl and Formyl Transferases - chemistry</subject><subject>Models, Molecular</subject><subject>Multienzyme Complexes - chemistry</subject><subject>Nucleotide Deaminases - chemistry</subject><subject>Phosphoribosylaminoimidazolecarboxamide Formyltransferase</subject><subject>Protein Structure, Secondary</subject><subject>Protein Structure, Tertiary</subject><subject>Structure-Activity Relationship</subject><subject>Substrate Specificity</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0E1PwzAMBuAIgdgYHPgDqBeQOBSctkmW4zS-Jg2BWDlHaZOwjn6MJEXbv6eo07hwsiw_tqUXoXMMNxgifJsVEAEBsjlAQ0wiCBPOySEaAgANI05hgE6cW3VtAiw5RgMcEcCY8SGaLLxtc99aWQaz2hUfS--CovZN4Jc6mHwXsg4ms-nkLUitrJ1pbLUtpdPBs86Xsi5cdYqOjCydPtvVEXp_uE-nT-H85bFbnIcyTrgPNeWSaWOwyimOFeiIR7GSSlM1ZiozY0pxgjlhJskJcMWwlthIQ42kGTdJPEJX_d21bb5a7byoCpfrspS1blonWMQ44Zx28LqHuW2cs9qItS0qabcCg_jNS-zz6uzF7mibVVr9yV1AHQh7UDivN_u5tJ-CspgRkb4uBBuncMeAiLjzl72XuROrprV1l8k_j38ABo-ARg</recordid><startdate>20021231</startdate><enddate>20021231</enddate><creator>Wolan, Dennis W</creator><creator>Greasley, Samantha E</creator><creator>Beardsley, G. Peter</creator><creator>Wilson, Ian A</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20021231</creationdate><title>Structural Insights into the Avian AICAR Transformylase Mechanism</title><author>Wolan, Dennis W ; Greasley, Samantha E ; Beardsley, G. Peter ; Wilson, Ian A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Animals</topic><topic>Binding Sites</topic><topic>Birds</topic><topic>Computer Simulation</topic><topic>Crystallography, X-Ray</topic><topic>Dimerization</topic><topic>Enzyme Activation</topic><topic>Hydroxymethyl and Formyl Transferases - chemistry</topic><topic>Models, Molecular</topic><topic>Multienzyme Complexes - chemistry</topic><topic>Nucleotide Deaminases - chemistry</topic><topic>Phosphoribosylaminoimidazolecarboxamide Formyltransferase</topic><topic>Protein Structure, Secondary</topic><topic>Protein Structure, Tertiary</topic><topic>Structure-Activity Relationship</topic><topic>Substrate Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wolan, Dennis W</creatorcontrib><creatorcontrib>Greasley, Samantha E</creatorcontrib><creatorcontrib>Beardsley, G. Peter</creatorcontrib><creatorcontrib>Wilson, Ian A</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wolan, Dennis W</au><au>Greasley, Samantha E</au><au>Beardsley, G. Peter</au><au>Wilson, Ian A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural Insights into the Avian AICAR Transformylase Mechanism</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2002-12-31</date><risdate>2002</risdate><volume>41</volume><issue>52</issue><spage>15505</spage><epage>15513</epage><pages>15505-15513</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>12501179</pmid><doi>10.1021/bi020505x</doi><tpages>9</tpages></addata></record> |
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subjects | Animals Binding Sites Birds Computer Simulation Crystallography, X-Ray Dimerization Enzyme Activation Hydroxymethyl and Formyl Transferases - chemistry Models, Molecular Multienzyme Complexes - chemistry Nucleotide Deaminases - chemistry Phosphoribosylaminoimidazolecarboxamide Formyltransferase Protein Structure, Secondary Protein Structure, Tertiary Structure-Activity Relationship Substrate Specificity |
title | Structural Insights into the Avian AICAR Transformylase Mechanism |
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