Structural Insights into the Avian AICAR Transformylase Mechanism

ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that c...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Biochemistry (Easton) 2002-12, Vol.41 (52), p.15505-15513
Hauptverfasser: Wolan, Dennis W, Greasley, Samantha E, Beardsley, G. Peter, Wilson, Ian A
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 15513
container_issue 52
container_start_page 15505
container_title Biochemistry (Easton)
container_volume 41
creator Wolan, Dennis W
Greasley, Samantha E
Beardsley, G. Peter
Wilson, Ian A
description ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.
doi_str_mv 10.1021/bi020505x
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_72795996</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>72795996</sourcerecordid><originalsourceid>FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</originalsourceid><addsrcrecordid>eNpt0E1PwzAMBuAIgdgYHPgDqBeQOBSctkmW4zS-Jg2BWDlHaZOwjn6MJEXbv6eo07hwsiw_tqUXoXMMNxgifJsVEAEBsjlAQ0wiCBPOySEaAgANI05hgE6cW3VtAiw5RgMcEcCY8SGaLLxtc99aWQaz2hUfS--CovZN4Jc6mHwXsg4ms-nkLUitrJ1pbLUtpdPBs86Xsi5cdYqOjCydPtvVEXp_uE-nT-H85bFbnIcyTrgPNeWSaWOwyimOFeiIR7GSSlM1ZiozY0pxgjlhJskJcMWwlthIQ42kGTdJPEJX_d21bb5a7byoCpfrspS1blonWMQ44Zx28LqHuW2cs9qItS0qabcCg_jNS-zz6uzF7mibVVr9yV1AHQh7UDivN_u5tJ-CspgRkb4uBBuncMeAiLjzl72XuROrprV1l8k_j38ABo-ARg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>72795996</pqid></control><display><type>article</type><title>Structural Insights into the Avian AICAR Transformylase Mechanism</title><source>MEDLINE</source><source>ACS Publications</source><creator>Wolan, Dennis W ; Greasley, Samantha E ; Beardsley, G. Peter ; Wilson, Ian A</creator><creatorcontrib>Wolan, Dennis W ; Greasley, Samantha E ; Beardsley, G. Peter ; Wilson, Ian A</creatorcontrib><description>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</description><identifier>ISSN: 0006-2960</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/bi020505x</identifier><identifier>PMID: 12501179</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Animals ; Binding Sites ; Birds ; Computer Simulation ; Crystallography, X-Ray ; Dimerization ; Enzyme Activation ; Hydroxymethyl and Formyl Transferases - chemistry ; Models, Molecular ; Multienzyme Complexes - chemistry ; Nucleotide Deaminases - chemistry ; Phosphoribosylaminoimidazolecarboxamide Formyltransferase ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Structure-Activity Relationship ; Substrate Specificity</subject><ispartof>Biochemistry (Easton), 2002-12, Vol.41 (52), p.15505-15513</ispartof><rights>Copyright © 2002 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</citedby><cites>FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/bi020505x$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/bi020505x$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2751,27055,27903,27904,56716,56766</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12501179$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wolan, Dennis W</creatorcontrib><creatorcontrib>Greasley, Samantha E</creatorcontrib><creatorcontrib>Beardsley, G. Peter</creatorcontrib><creatorcontrib>Wilson, Ian A</creatorcontrib><title>Structural Insights into the Avian AICAR Transformylase Mechanism</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</description><subject>Animals</subject><subject>Binding Sites</subject><subject>Birds</subject><subject>Computer Simulation</subject><subject>Crystallography, X-Ray</subject><subject>Dimerization</subject><subject>Enzyme Activation</subject><subject>Hydroxymethyl and Formyl Transferases - chemistry</subject><subject>Models, Molecular</subject><subject>Multienzyme Complexes - chemistry</subject><subject>Nucleotide Deaminases - chemistry</subject><subject>Phosphoribosylaminoimidazolecarboxamide Formyltransferase</subject><subject>Protein Structure, Secondary</subject><subject>Protein Structure, Tertiary</subject><subject>Structure-Activity Relationship</subject><subject>Substrate Specificity</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0E1PwzAMBuAIgdgYHPgDqBeQOBSctkmW4zS-Jg2BWDlHaZOwjn6MJEXbv6eo07hwsiw_tqUXoXMMNxgifJsVEAEBsjlAQ0wiCBPOySEaAgANI05hgE6cW3VtAiw5RgMcEcCY8SGaLLxtc99aWQaz2hUfS--CovZN4Jc6mHwXsg4ms-nkLUitrJ1pbLUtpdPBs86Xsi5cdYqOjCydPtvVEXp_uE-nT-H85bFbnIcyTrgPNeWSaWOwyimOFeiIR7GSSlM1ZiozY0pxgjlhJskJcMWwlthIQ42kGTdJPEJX_d21bb5a7byoCpfrspS1blonWMQ44Zx28LqHuW2cs9qItS0qabcCg_jNS-zz6uzF7mibVVr9yV1AHQh7UDivN_u5tJ-CspgRkb4uBBuncMeAiLjzl72XuROrprV1l8k_j38ABo-ARg</recordid><startdate>20021231</startdate><enddate>20021231</enddate><creator>Wolan, Dennis W</creator><creator>Greasley, Samantha E</creator><creator>Beardsley, G. Peter</creator><creator>Wilson, Ian A</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20021231</creationdate><title>Structural Insights into the Avian AICAR Transformylase Mechanism</title><author>Wolan, Dennis W ; Greasley, Samantha E ; Beardsley, G. Peter ; Wilson, Ian A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a349t-e69a7eff1dc613d0e2923dade6d87dbf866141957f4c509d71ea1faf6fa6b9f43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Animals</topic><topic>Binding Sites</topic><topic>Birds</topic><topic>Computer Simulation</topic><topic>Crystallography, X-Ray</topic><topic>Dimerization</topic><topic>Enzyme Activation</topic><topic>Hydroxymethyl and Formyl Transferases - chemistry</topic><topic>Models, Molecular</topic><topic>Multienzyme Complexes - chemistry</topic><topic>Nucleotide Deaminases - chemistry</topic><topic>Phosphoribosylaminoimidazolecarboxamide Formyltransferase</topic><topic>Protein Structure, Secondary</topic><topic>Protein Structure, Tertiary</topic><topic>Structure-Activity Relationship</topic><topic>Substrate Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wolan, Dennis W</creatorcontrib><creatorcontrib>Greasley, Samantha E</creatorcontrib><creatorcontrib>Beardsley, G. Peter</creatorcontrib><creatorcontrib>Wilson, Ian A</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wolan, Dennis W</au><au>Greasley, Samantha E</au><au>Beardsley, G. Peter</au><au>Wilson, Ian A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural Insights into the Avian AICAR Transformylase Mechanism</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2002-12-31</date><risdate>2002</risdate><volume>41</volume><issue>52</issue><spage>15505</spage><epage>15513</epage><pages>15505-15513</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Å resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His268 concomitant with formyl transfer. Lys267 is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>12501179</pmid><doi>10.1021/bi020505x</doi><tpages>9</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0006-2960
ispartof Biochemistry (Easton), 2002-12, Vol.41 (52), p.15505-15513
issn 0006-2960
1520-4995
language eng
recordid cdi_proquest_miscellaneous_72795996
source MEDLINE; ACS Publications
subjects Animals
Binding Sites
Birds
Computer Simulation
Crystallography, X-Ray
Dimerization
Enzyme Activation
Hydroxymethyl and Formyl Transferases - chemistry
Models, Molecular
Multienzyme Complexes - chemistry
Nucleotide Deaminases - chemistry
Phosphoribosylaminoimidazolecarboxamide Formyltransferase
Protein Structure, Secondary
Protein Structure, Tertiary
Structure-Activity Relationship
Substrate Specificity
title Structural Insights into the Avian AICAR Transformylase Mechanism
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-25T15%3A47%3A45IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Structural%20Insights%20into%20the%20Avian%20AICAR%20Transformylase%20Mechanism&rft.jtitle=Biochemistry%20(Easton)&rft.au=Wolan,%20Dennis%20W&rft.date=2002-12-31&rft.volume=41&rft.issue=52&rft.spage=15505&rft.epage=15513&rft.pages=15505-15513&rft.issn=0006-2960&rft.eissn=1520-4995&rft_id=info:doi/10.1021/bi020505x&rft_dat=%3Cproquest_cross%3E72795996%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=72795996&rft_id=info:pmid/12501179&rfr_iscdi=true