A Survey of Flagellate Diversity at Four Deep-Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches
Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and...
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description | Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and, when possible, species. The small subunit ribosomal RNA genes of each vent species and related strains from shallow-waters and the American Type Culture Collection were sequenced then used for comparative analysis with database sequences to place taxa in an rDNA tree. The hydrothermal vent flagellates belonged to six different taxonomic orders: the Ancyromonadida, Bicosoecida, Cercomonadida, Choanoflagellida, Chrysomonadida, and Kinetoplastida. Comparative analysis of vent isolate and database sequences resolved systematic placement of some well-known species with previously uncertain taxonomic affinities, such as Ancyromonas sigmoides, Caecitellus parvulus, and Massisteria marina. Many of these vent isolates are ubiquitous members of marine, freshwater, and terrestrial ecosystems worldwide, suggesting a global distribution of these flagellate species. |
doi_str_mv | 10.1111/j.1550-7408.2000.tb00067.x |
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Roger</creator><creatorcontrib>Atkins, Michael S ; Teske, Andreas P ; Anderson, O. Roger</creatorcontrib><description>Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and, when possible, species. The small subunit ribosomal RNA genes of each vent species and related strains from shallow-waters and the American Type Culture Collection were sequenced then used for comparative analysis with database sequences to place taxa in an rDNA tree. The hydrothermal vent flagellates belonged to six different taxonomic orders: the Ancyromonadida, Bicosoecida, Cercomonadida, Choanoflagellida, Chrysomonadida, and Kinetoplastida. Comparative analysis of vent isolate and database sequences resolved systematic placement of some well-known species with previously uncertain taxonomic affinities, such as Ancyromonas sigmoides, Caecitellus parvulus, and Massisteria marina. Many of these vent isolates are ubiquitous members of marine, freshwater, and terrestrial ecosystems worldwide, suggesting a global distribution of these flagellate species.</description><identifier>ISSN: 1066-5234</identifier><identifier>EISSN: 1550-7408</identifier><identifier>DOI: 10.1111/j.1550-7408.2000.tb00067.x</identifier><identifier>PMID: 11140455</identifier><identifier>CODEN: JEMIED</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>18S rDNA ; Ancyromonadida ; Animals ; Bicosoecida ; Biological and medical sciences ; Cercomonadida ; Choanoflagellida ; Chrysomonadida ; Culture Media ; DNA, Ribosomal - analysis ; Ecosystem ; Eukaryota - classification ; Eukaryota - genetics ; Eukaryota - growth & development ; Eukaryota - isolation & purification ; Eukaryota - ultrastructure ; extreme environment ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA - genetics ; Genetic Variation ; Kinetoplastida ; Microscopy, Electron ; Molecular Sequence Data ; Polymerase Chain Reaction ; Protozoa ; RNA, Ribosomal, 18S - genetics ; Seawater - parasitology ; Sequence Analysis, DNA ; Systematics. Geographical distribution. Morphology. 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Roger</creatorcontrib><title>A Survey of Flagellate Diversity at Four Deep-Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches</title><title>The Journal of eukaryotic microbiology</title><addtitle>J Eukaryot Microbiol</addtitle><description>Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and, when possible, species. The small subunit ribosomal RNA genes of each vent species and related strains from shallow-waters and the American Type Culture Collection were sequenced then used for comparative analysis with database sequences to place taxa in an rDNA tree. The hydrothermal vent flagellates belonged to six different taxonomic orders: the Ancyromonadida, Bicosoecida, Cercomonadida, Choanoflagellida, Chrysomonadida, and Kinetoplastida. Comparative analysis of vent isolate and database sequences resolved systematic placement of some well-known species with previously uncertain taxonomic affinities, such as Ancyromonas sigmoides, Caecitellus parvulus, and Massisteria marina. Many of these vent isolates are ubiquitous members of marine, freshwater, and terrestrial ecosystems worldwide, suggesting a global distribution of these flagellate species.</description><subject>18S rDNA</subject><subject>Ancyromonadida</subject><subject>Animals</subject><subject>Bicosoecida</subject><subject>Biological and medical sciences</subject><subject>Cercomonadida</subject><subject>Choanoflagellida</subject><subject>Chrysomonadida</subject><subject>Culture Media</subject><subject>DNA, Ribosomal - analysis</subject><subject>Ecosystem</subject><subject>Eukaryota - classification</subject><subject>Eukaryota - genetics</subject><subject>Eukaryota - growth & development</subject><subject>Eukaryota - isolation & purification</subject><subject>Eukaryota - ultrastructure</subject><subject>extreme environment</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA - genetics</subject><subject>Genetic Variation</subject><subject>Kinetoplastida</subject><subject>Microscopy, Electron</subject><subject>Molecular Sequence Data</subject><subject>Polymerase Chain Reaction</subject><subject>Protozoa</subject><subject>RNA, Ribosomal, 18S - genetics</subject><subject>Seawater - parasitology</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics. Geographical distribution. Morphology. Cytology</subject><subject>Temperature</subject><issn>1066-5234</issn><issn>1550-7408</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqVkc9u1DAQxiMEoqXwCshCiFuCndj5wwFp2-62oNIili1Ha-JMWi_ZZLGddvMMfWkcZdWe64NtjX_zzfibIPjAaMT8-ryOmBA0zDjNo5hSGrnS72kW7V4Eh49PL_2dpmko4oQfBG-sXVPK0pix18GBV-GUC3EYPMzIsjd3OJCuJosGbrBpwCE51XdorHYDAUcWXW_IKeI2XCKQ86EynbtFs4GGXGPrLNEt8QEyB-vQtOQnKF1rRa4UQktWVrc3ZOlMr1xvfA60FfnRNaj6BgyZbbemA3WL9m3wqobG4rv9eRSsFvPfJ-fhxdXZt5PZRVgKEdOwTrMkS1lNOUurlCa0ivMsL4oqqUUFwsexyDikOcUix1iohCuWC1qKGBgXPDkKPk26vvC_Hq2TG23V-PEWu97KLBYs80558MsEKtNZa7CWW6M3YAbJqBxHIddy9FuOfstxFHI_Crnzye_3Vfpyg9VT6t57D3zcA2AVNLWBVmn7xPHMd5t77OuE3esGh2d0IL_PV5xSLxBOAtpPZ_coAOavHJ0U8s_lmWTHv44v4-tCjnw-8aXuuhaf8-f_JhfFSA</recordid><startdate>200007</startdate><enddate>200007</enddate><creator>Atkins, Michael S</creator><creator>Teske, Andreas P</creator><creator>Anderson, O. Roger</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>200007</creationdate><title>A Survey of Flagellate Diversity at Four Deep-Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches</title><author>Atkins, Michael S ; Teske, Andreas P ; Anderson, O. Roger</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b5520-f673761f0416d6030d287899d3f5da5f04e974a680e98e25c34c1850b52a14543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>18S rDNA</topic><topic>Ancyromonadida</topic><topic>Animals</topic><topic>Bicosoecida</topic><topic>Biological and medical sciences</topic><topic>Cercomonadida</topic><topic>Choanoflagellida</topic><topic>Chrysomonadida</topic><topic>Culture Media</topic><topic>DNA, Ribosomal - analysis</topic><topic>Ecosystem</topic><topic>Eukaryota - classification</topic><topic>Eukaryota - genetics</topic><topic>Eukaryota - growth & development</topic><topic>Eukaryota - isolation & purification</topic><topic>Eukaryota - ultrastructure</topic><topic>extreme environment</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA - genetics</topic><topic>Genetic Variation</topic><topic>Kinetoplastida</topic><topic>Microscopy, Electron</topic><topic>Molecular Sequence Data</topic><topic>Polymerase Chain Reaction</topic><topic>Protozoa</topic><topic>RNA, Ribosomal, 18S - genetics</topic><topic>Seawater - parasitology</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics. Geographical distribution. Morphology. Cytology</topic><topic>Temperature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Atkins, Michael S</creatorcontrib><creatorcontrib>Teske, Andreas P</creatorcontrib><creatorcontrib>Anderson, O. Roger</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of eukaryotic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Atkins, Michael S</au><au>Teske, Andreas P</au><au>Anderson, O. Roger</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Survey of Flagellate Diversity at Four Deep-Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches</atitle><jtitle>The Journal of eukaryotic microbiology</jtitle><addtitle>J Eukaryot Microbiol</addtitle><date>2000-07</date><risdate>2000</risdate><volume>47</volume><issue>4</issue><spage>400</spage><epage>411</epage><pages>400-411</pages><issn>1066-5234</issn><eissn>1550-7408</eissn><coden>JEMIED</coden><abstract>Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and, when possible, species. The small subunit ribosomal RNA genes of each vent species and related strains from shallow-waters and the American Type Culture Collection were sequenced then used for comparative analysis with database sequences to place taxa in an rDNA tree. The hydrothermal vent flagellates belonged to six different taxonomic orders: the Ancyromonadida, Bicosoecida, Cercomonadida, Choanoflagellida, Chrysomonadida, and Kinetoplastida. Comparative analysis of vent isolate and database sequences resolved systematic placement of some well-known species with previously uncertain taxonomic affinities, such as Ancyromonas sigmoides, Caecitellus parvulus, and Massisteria marina. 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subjects | 18S rDNA Ancyromonadida Animals Bicosoecida Biological and medical sciences Cercomonadida Choanoflagellida Chrysomonadida Culture Media DNA, Ribosomal - analysis Ecosystem Eukaryota - classification Eukaryota - genetics Eukaryota - growth & development Eukaryota - isolation & purification Eukaryota - ultrastructure extreme environment Fundamental and applied biological sciences. Psychology Genes, rRNA - genetics Genetic Variation Kinetoplastida Microscopy, Electron Molecular Sequence Data Polymerase Chain Reaction Protozoa RNA, Ribosomal, 18S - genetics Seawater - parasitology Sequence Analysis, DNA Systematics. Geographical distribution. Morphology. Cytology Temperature |
title | A Survey of Flagellate Diversity at Four Deep-Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches |
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