Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal
Bacteria have been found associated with a variety of ancient samples 1 , however few studies are generally accepted due to questions about sample quality and contamination. When Cano and Borucki 2 isolated a strain of Bacillus sphaericus from an extinct bee trapped in 25–30 million-year-old amber,...
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Veröffentlicht in: | Nature (London) 2000-10, Vol.407 (6806), p.897-900 |
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description | Bacteria have been found associated with a variety of ancient samples
1
, however few studies are generally accepted due to questions about sample quality and contamination. When Cano and Borucki
2
isolated a strain of
Bacillus sphaericus
from an extinct bee trapped in 25–30 million-year-old amber, careful sample selection and stringent sterilization techniques were the keys to acceptance. Here we report the isolation and growth of a previously unrecognized spore-forming bacterium (
Bacillus
species, designated 2-9-3) from a brine inclusion within a 250 million-year-old salt crystal from the Permian Salado Formation. Complete gene sequences of the 16S ribosomal DNA show that the organism is part of the lineage of
Bacillus marismortui
and
Virgibacillus pantothenticus
. Delicate crystal structures and sedimentary features indicate the salt has not recrystallized since formation. Samples were rejected if brine inclusions showed physical signs of possible contamination. Surfaces of salt crystal samples were sterilized with strong alkali and acid before extracting brines from inclusions. Sterilization procedures reduce the probability of contamination to less than 1 in 10
9
. |
doi_str_mv | 10.1038/35038060 |
format | Article |
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1
, however few studies are generally accepted due to questions about sample quality and contamination. When Cano and Borucki
2
isolated a strain of
Bacillus sphaericus
from an extinct bee trapped in 25–30 million-year-old amber, careful sample selection and stringent sterilization techniques were the keys to acceptance. Here we report the isolation and growth of a previously unrecognized spore-forming bacterium (
Bacillus
species, designated 2-9-3) from a brine inclusion within a 250 million-year-old salt crystal from the Permian Salado Formation. Complete gene sequences of the 16S ribosomal DNA show that the organism is part of the lineage of
Bacillus marismortui
and
Virgibacillus pantothenticus
. Delicate crystal structures and sedimentary features indicate the salt has not recrystallized since formation. Samples were rejected if brine inclusions showed physical signs of possible contamination. Surfaces of salt crystal samples were sterilized with strong alkali and acid before extracting brines from inclusions. Sterilization procedures reduce the probability of contamination to less than 1 in 10
9
.</description><identifier>ISSN: 0028-0836</identifier><identifier>EISSN: 1476-4687</identifier><identifier>DOI: 10.1038/35038060</identifier><identifier>PMID: 11057666</identifier><identifier>CODEN: NATUAS</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>Bacillus - classification ; Bacillus - growth & development ; Bacillus - isolation & purification ; Bacillus marismortui ; Bacteria ; Bacteriology ; Biological and medical sciences ; Biology ; Brines ; Contamination ; Crystallization ; Crystals ; Deoxyribonucleic acid ; DNA ; Earth sciences ; Earth, ocean, space ; Exact sciences and technology ; Fundamental and applied biological sciences. Psychology ; Genes ; Humanities and Social Sciences ; Invertebrate paleontology ; letter ; Marine ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; multidisciplinary ; Paleontology ; Permian ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Salt ; Salts ; Science ; Science (multidisciplinary) ; Sequence Analysis, DNA ; Sodium Chloride ; Spores, Bacterial - isolation & purification ; Sterilization ; Time ; Virgibacillus pantothenticus</subject><ispartof>Nature (London), 2000-10, Vol.407 (6806), p.897-900</ispartof><rights>Macmillan Magazines Ltd. 2000</rights><rights>2000 INIST-CNRS</rights><rights>COPYRIGHT 2000 Nature Publishing Group</rights><rights>Copyright Macmillan Journals Ltd. Oct 19, 2000</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a694t-b37e249a511a29cf186426064240cd46087c4060c45fb75745e896596f1cc853</citedby><cites>FETCH-LOGICAL-a694t-b37e249a511a29cf186426064240cd46087c4060c45fb75745e896596f1cc853</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/35038060$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/35038060$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1512694$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11057666$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vreeland, Russell H.</creatorcontrib><creatorcontrib>Rosenzweig, William D.</creatorcontrib><creatorcontrib>Powers, Dennis W.</creatorcontrib><title>Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal</title><title>Nature (London)</title><addtitle>Nature</addtitle><addtitle>Nature</addtitle><description>Bacteria have been found associated with a variety of ancient samples
1
, however few studies are generally accepted due to questions about sample quality and contamination. When Cano and Borucki
2
isolated a strain of
Bacillus sphaericus
from an extinct bee trapped in 25–30 million-year-old amber, careful sample selection and stringent sterilization techniques were the keys to acceptance. Here we report the isolation and growth of a previously unrecognized spore-forming bacterium (
Bacillus
species, designated 2-9-3) from a brine inclusion within a 250 million-year-old salt crystal from the Permian Salado Formation. Complete gene sequences of the 16S ribosomal DNA show that the organism is part of the lineage of
Bacillus marismortui
and
Virgibacillus pantothenticus
. Delicate crystal structures and sedimentary features indicate the salt has not recrystallized since formation. Samples were rejected if brine inclusions showed physical signs of possible contamination. Surfaces of salt crystal samples were sterilized with strong alkali and acid before extracting brines from inclusions. Sterilization procedures reduce the probability of contamination to less than 1 in 10
9
.</description><subject>Bacillus - classification</subject><subject>Bacillus - growth & development</subject><subject>Bacillus - isolation & purification</subject><subject>Bacillus marismortui</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Biology</subject><subject>Brines</subject><subject>Contamination</subject><subject>Crystallization</subject><subject>Crystals</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Earth sciences</subject><subject>Earth, ocean, space</subject><subject>Exact sciences and technology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes</subject><subject>Humanities and Social Sciences</subject><subject>Invertebrate paleontology</subject><subject>letter</subject><subject>Marine</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>multidisciplinary</subject><subject>Paleontology</subject><subject>Permian</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Salt</subject><subject>Salts</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium Chloride</subject><subject>Spores, Bacterial - isolation & purification</subject><subject>Sterilization</subject><subject>Time</subject><subject>Virgibacillus pantothenticus</subject><issn>0028-0836</issn><issn>1476-4687</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BEC</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqF0v2L0zAYB_AiijdPwb9Aiogo0jNJ89Yfx_BlcCjo0B9DliUzR9rskhTcf-8jq-ymJ0chhfSTJzxPv1X1FKMLjFr5tmWwIo7uVTNMBW8ol-J-NUOIyAbJlp9Vj3K-QggxLOjD6gxjxATnfFZ9W-YYdPFxqKOrdU0YqnsfAmw0e6tTE8Om_qFDLDHYpIdSr7UpNvmxr12KPRzZJd_rtK-zDqU2aZ-LDo-rB06HbJ9M7_Nq9f7davGxufz8YbmYXzaad7Q061ZYQjvNMNakMw5LTglHsFBkNpQjKQyFvgxlbi2YoMzKjrOOO2yMZO159fJQdpfi9WhzUb3PxoagBxvHrARpRQdt3wmJEDCRltwJseAUd7QD-PwveBXHNECziiBKJSFtC6g5oK0OVvnBxZK02doBRhniYJ2H7TmW8O8EIzeKnniz89fqJrq4BcGzsb03t1Z9fXIATLE_y1aPOavl1y-n9s3_7Xz1ffHpVL86aJNizsk6NYVBYaR-J1P9SSbQZ9O8xnVvN0c4RRHAiwnobHRwEDbj89ExTCAzx2YyfBm2Nh3n_s-dvwBaKe-j</recordid><startdate>20001019</startdate><enddate>20001019</enddate><creator>Vreeland, Russell H.</creator><creator>Rosenzweig, William D.</creator><creator>Powers, Dennis W.</creator><general>Nature Publishing Group UK</general><general>Nature Publishing</general><general>Nature Publishing Group</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ATWCN</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T5</scope><scope>7TG</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88G</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2M</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PCBAR</scope><scope>PDBOC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PSYQQ</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>R05</scope><scope>RC3</scope><scope>S0X</scope><scope>SOI</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope></search><sort><creationdate>20001019</creationdate><title>Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal</title><author>Vreeland, Russell H. ; 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Academic</collection><jtitle>Nature (London)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vreeland, Russell H.</au><au>Rosenzweig, William D.</au><au>Powers, Dennis W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal</atitle><jtitle>Nature (London)</jtitle><stitle>Nature</stitle><addtitle>Nature</addtitle><date>2000-10-19</date><risdate>2000</risdate><volume>407</volume><issue>6806</issue><spage>897</spage><epage>900</epage><pages>897-900</pages><issn>0028-0836</issn><eissn>1476-4687</eissn><coden>NATUAS</coden><abstract>Bacteria have been found associated with a variety of ancient samples
1
, however few studies are generally accepted due to questions about sample quality and contamination. When Cano and Borucki
2
isolated a strain of
Bacillus sphaericus
from an extinct bee trapped in 25–30 million-year-old amber, careful sample selection and stringent sterilization techniques were the keys to acceptance. Here we report the isolation and growth of a previously unrecognized spore-forming bacterium (
Bacillus
species, designated 2-9-3) from a brine inclusion within a 250 million-year-old salt crystal from the Permian Salado Formation. Complete gene sequences of the 16S ribosomal DNA show that the organism is part of the lineage of
Bacillus marismortui
and
Virgibacillus pantothenticus
. Delicate crystal structures and sedimentary features indicate the salt has not recrystallized since formation. Samples were rejected if brine inclusions showed physical signs of possible contamination. Surfaces of salt crystal samples were sterilized with strong alkali and acid before extracting brines from inclusions. Sterilization procedures reduce the probability of contamination to less than 1 in 10
9
.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>11057666</pmid><doi>10.1038/35038060</doi><tpages>4</tpages></addata></record> |
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subjects | Bacillus - classification Bacillus - growth & development Bacillus - isolation & purification Bacillus marismortui Bacteria Bacteriology Biological and medical sciences Biology Brines Contamination Crystallization Crystals Deoxyribonucleic acid DNA Earth sciences Earth, ocean, space Exact sciences and technology Fundamental and applied biological sciences. Psychology Genes Humanities and Social Sciences Invertebrate paleontology letter Marine Microbiology Miscellaneous Molecular Sequence Data multidisciplinary Paleontology Permian Phylogeny RNA, Ribosomal, 16S - genetics Salt Salts Science Science (multidisciplinary) Sequence Analysis, DNA Sodium Chloride Spores, Bacterial - isolation & purification Sterilization Time Virgibacillus pantothenticus |
title | Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal |
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