Intraspecies variation in bacterial genomes: the need for a species genome concept
Bacterial populations are clonal. Their evolution involves not only divergence between orthologous genes but also gain of genes from other clones or species, which has only recently been widely appreciated through macrorestriction mapping, genomic subtraction and complete genome sequencing. Genes ca...
Gespeichert in:
| Veröffentlicht in: | Trends in Microbiology 2000-09, Vol.8 (9), p.396-401 |
|---|---|
| Hauptverfasser: | , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 401 |
|---|---|
| container_issue | 9 |
| container_start_page | 396 |
| container_title | Trends in Microbiology |
| container_volume | 8 |
| creator | Lan, Ruiting Reeves, Peter R. |
| description | Bacterial populations are clonal. Their evolution involves not only divergence between orthologous genes but also gain of genes from other clones or species, which has only recently been widely appreciated through macrorestriction mapping, genomic subtraction and complete genome sequencing. Genes can also be lost in response to selection or by random mutation after becoming redundant. The bacterial genome is a dynamic structure and intraspecies variation needs to be included in genome analysis if we are to gain insight into the full species genome. |
| doi_str_mv | 10.1016/S0966-842X(00)01791-1 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_72262967</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0966842X00017911</els_id><sourcerecordid>17638283</sourcerecordid><originalsourceid>FETCH-LOGICAL-c444t-fdd16710f81a2226a57c018894da54430f3da74458bb2fe01ec37285d86e69f13</originalsourceid><addsrcrecordid>eNqFkE1LAzEQhoMoWqs_QclJ9LA6yWaTrBcR8aMgCH6At5Amsxppd2uyLfjv3bpVvPU0DPO8M8NDyAGDUwZMnj1BKWWmBX89BjgBpkqWsQ0yYFrpTOQaNsngD9khuyl9AEBR8GKb7DAodZmDHJDHUd1Gm2boAia6sDHYNjQ1DTUdW9di10_oG9bNFNM5bd-R1oieVk2klv7G-jl1Te1w1u6RrcpOEu6v6pC83Fw_X91l9w-3o6vL-8wJIdqs8p5JxaDSzHLOpS2UA6Z1KbwthMihyr1VQhR6POYVAkOXK64LryXKsmL5kBz1e2ex-Zxjas00JIeTia2xmSejuqW8lGotyJTMNdd5BxY96GKTUsTKzGKY2vhlGJildfNj3SyVGgDzY90sPzlcHZiPp-j_pXrNHXDRA9j5WASMJnXiOls-RHSt8U1Yc-IbuV-RbA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>17638283</pqid></control><display><type>article</type><title>Intraspecies variation in bacterial genomes: the need for a species genome concept</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals</source><creator>Lan, Ruiting ; Reeves, Peter R.</creator><creatorcontrib>Lan, Ruiting ; Reeves, Peter R.</creatorcontrib><description>Bacterial populations are clonal. Their evolution involves not only divergence between orthologous genes but also gain of genes from other clones or species, which has only recently been widely appreciated through macrorestriction mapping, genomic subtraction and complete genome sequencing. Genes can also be lost in response to selection or by random mutation after becoming redundant. The bacterial genome is a dynamic structure and intraspecies variation needs to be included in genome analysis if we are to gain insight into the full species genome.</description><identifier>ISSN: 0966-842X</identifier><identifier>EISSN: 1878-4380</identifier><identifier>DOI: 10.1016/S0966-842X(00)01791-1</identifier><identifier>PMID: 10989306</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Bacteria - classification ; Bacteria - genetics ; Biological Evolution ; Enterobacteriaceae - genetics ; Gene loss ; Genetic Variation ; Genome evolution ; Genome variation ; Genome, Bacterial ; Helicobacter pylori - genetics ; Lateral gene transfer ; Neisseria meningitidis - genetics ; Niche adaptation ; Species genome ; Species Specificity</subject><ispartof>Trends in Microbiology, 2000-09, Vol.8 (9), p.396-401</ispartof><rights>2000 Elsevier Science Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c444t-fdd16710f81a2226a57c018894da54430f3da74458bb2fe01ec37285d86e69f13</citedby><cites>FETCH-LOGICAL-c444t-fdd16710f81a2226a57c018894da54430f3da74458bb2fe01ec37285d86e69f13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0966842X00017911$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>313,314,776,780,788,3537,27899,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10989306$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lan, Ruiting</creatorcontrib><creatorcontrib>Reeves, Peter R.</creatorcontrib><title>Intraspecies variation in bacterial genomes: the need for a species genome concept</title><title>Trends in Microbiology</title><addtitle>Trends Microbiol</addtitle><description>Bacterial populations are clonal. Their evolution involves not only divergence between orthologous genes but also gain of genes from other clones or species, which has only recently been widely appreciated through macrorestriction mapping, genomic subtraction and complete genome sequencing. Genes can also be lost in response to selection or by random mutation after becoming redundant. The bacterial genome is a dynamic structure and intraspecies variation needs to be included in genome analysis if we are to gain insight into the full species genome.</description><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Biological Evolution</subject><subject>Enterobacteriaceae - genetics</subject><subject>Gene loss</subject><subject>Genetic Variation</subject><subject>Genome evolution</subject><subject>Genome variation</subject><subject>Genome, Bacterial</subject><subject>Helicobacter pylori - genetics</subject><subject>Lateral gene transfer</subject><subject>Neisseria meningitidis - genetics</subject><subject>Niche adaptation</subject><subject>Species genome</subject><subject>Species Specificity</subject><issn>0966-842X</issn><issn>1878-4380</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1LAzEQhoMoWqs_QclJ9LA6yWaTrBcR8aMgCH6At5Amsxppd2uyLfjv3bpVvPU0DPO8M8NDyAGDUwZMnj1BKWWmBX89BjgBpkqWsQ0yYFrpTOQaNsngD9khuyl9AEBR8GKb7DAodZmDHJDHUd1Gm2boAia6sDHYNjQ1DTUdW9di10_oG9bNFNM5bd-R1oieVk2klv7G-jl1Te1w1u6RrcpOEu6v6pC83Fw_X91l9w-3o6vL-8wJIdqs8p5JxaDSzHLOpS2UA6Z1KbwthMihyr1VQhR6POYVAkOXK64LryXKsmL5kBz1e2ex-Zxjas00JIeTia2xmSejuqW8lGotyJTMNdd5BxY96GKTUsTKzGKY2vhlGJildfNj3SyVGgDzY90sPzlcHZiPp-j_pXrNHXDRA9j5WASMJnXiOls-RHSt8U1Yc-IbuV-RbA</recordid><startdate>20000901</startdate><enddate>20000901</enddate><creator>Lan, Ruiting</creator><creator>Reeves, Peter R.</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20000901</creationdate><title>Intraspecies variation in bacterial genomes: the need for a species genome concept</title><author>Lan, Ruiting ; Reeves, Peter R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c444t-fdd16710f81a2226a57c018894da54430f3da74458bb2fe01ec37285d86e69f13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Biological Evolution</topic><topic>Enterobacteriaceae - genetics</topic><topic>Gene loss</topic><topic>Genetic Variation</topic><topic>Genome evolution</topic><topic>Genome variation</topic><topic>Genome, Bacterial</topic><topic>Helicobacter pylori - genetics</topic><topic>Lateral gene transfer</topic><topic>Neisseria meningitidis - genetics</topic><topic>Niche adaptation</topic><topic>Species genome</topic><topic>Species Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lan, Ruiting</creatorcontrib><creatorcontrib>Reeves, Peter R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Trends in Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lan, Ruiting</au><au>Reeves, Peter R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Intraspecies variation in bacterial genomes: the need for a species genome concept</atitle><jtitle>Trends in Microbiology</jtitle><addtitle>Trends Microbiol</addtitle><date>2000-09-01</date><risdate>2000</risdate><volume>8</volume><issue>9</issue><spage>396</spage><epage>401</epage><pages>396-401</pages><issn>0966-842X</issn><eissn>1878-4380</eissn><abstract>Bacterial populations are clonal. Their evolution involves not only divergence between orthologous genes but also gain of genes from other clones or species, which has only recently been widely appreciated through macrorestriction mapping, genomic subtraction and complete genome sequencing. Genes can also be lost in response to selection or by random mutation after becoming redundant. The bacterial genome is a dynamic structure and intraspecies variation needs to be included in genome analysis if we are to gain insight into the full species genome.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>10989306</pmid><doi>10.1016/S0966-842X(00)01791-1</doi><tpages>6</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0966-842X |
| ispartof | Trends in Microbiology, 2000-09, Vol.8 (9), p.396-401 |
| issn | 0966-842X 1878-4380 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_72262967 |
| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | Bacteria - classification Bacteria - genetics Biological Evolution Enterobacteriaceae - genetics Gene loss Genetic Variation Genome evolution Genome variation Genome, Bacterial Helicobacter pylori - genetics Lateral gene transfer Neisseria meningitidis - genetics Niche adaptation Species genome Species Specificity |
| title | Intraspecies variation in bacterial genomes: the need for a species genome concept |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-08T21%3A10%3A50IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Intraspecies%20variation%20in%20bacterial%20genomes:%20the%20need%20for%20a%20species%20genome%20concept&rft.jtitle=Trends%20in%20Microbiology&rft.au=Lan,%20Ruiting&rft.date=2000-09-01&rft.volume=8&rft.issue=9&rft.spage=396&rft.epage=401&rft.pages=396-401&rft.issn=0966-842X&rft.eissn=1878-4380&rft_id=info:doi/10.1016/S0966-842X(00)01791-1&rft_dat=%3Cproquest_cross%3E17638283%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=17638283&rft_id=info:pmid/10989306&rft_els_id=S0966842X00017911&rfr_iscdi=true |