Comparative analysis of RNA editing sites in higher plant chloroplasts
Transcripts of land plant chloroplast genomes undergo C-to-U RNA editing. Systematic search disclosed 31 editing sites in tobacco, 27 in maize, and 21 in rice. Based on these identified sites, potential editing sites have been predicted in the transcripts from four angiosperm chloroplast genomes whi...
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| Veröffentlicht in: | Journal of molecular evolution 2001-10, Vol.53 (4-5), p.327-332 |
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| container_title | Journal of molecular evolution |
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| creator | Tsudzuki, T Wakasugi, T Sugiura, M |
| description | Transcripts of land plant chloroplast genomes undergo C-to-U RNA editing. Systematic search disclosed 31 editing sites in tobacco, 27 in maize, and 21 in rice. Based on these identified sites, potential editing sites have been predicted in the transcripts from four angiosperm chloroplast genomes which have been completely sequenced. Most RNA editing events occur in internal codons, which result in amino-acid substitutions. The initiation codon AUG was found to be created from ACG by RNA editing in the transcripts from rpl2, psbL, and ndhD genes. Comparison of editing patterns raises a possibility that many editing sites were acquired in the evolution of angiosperms. |
| doi_str_mv | 10.1007/s002390010222 |
| format | Article |
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Systematic search disclosed 31 editing sites in tobacco, 27 in maize, and 21 in rice. Based on these identified sites, potential editing sites have been predicted in the transcripts from four angiosperm chloroplast genomes which have been completely sequenced. Most RNA editing events occur in internal codons, which result in amino-acid substitutions. The initiation codon AUG was found to be created from ACG by RNA editing in the transcripts from rpl2, psbL, and ndhD genes. Comparison of editing patterns raises a possibility that many editing sites were acquired in the evolution of angiosperms.</description><identifier>ISSN: 0022-2844</identifier><identifier>EISSN: 1432-1432</identifier><identifier>DOI: 10.1007/s002390010222</identifier><identifier>PMID: 11675592</identifier><language>eng</language><publisher>Germany: Springer Nature B.V</publisher><subject>Amino acid substitution ; Angiosperms ; Binding Sites - genetics ; Chloroplasts ; Chloroplasts - genetics ; Chromosome Mapping ; Codon, Initiator - genetics ; Codons ; Evolution, Molecular ; Evolutionary biology ; Genomes ; Genomics ; Magnoliopsida - genetics ; molecular evolution ; ndhD gene ; Nicotiana ; Oryza sativa ; Plant biology ; Plants - genetics ; psbL gene ; Ribonucleic acid ; RNA ; RNA Editing ; RNA, Plant - genetics ; RNA, Transfer - genetics ; rpl2 gene ; Tobacco ; Transcription, Genetic ; Zea mays</subject><ispartof>Journal of molecular evolution, 2001-10, Vol.53 (4-5), p.327-332</ispartof><rights>Springer-Verlag New York Inc. 2001</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c446t-111937a48bae71a1ba84a99b6fafaec8a6be0c861bb91f7192c4b3c5334efae53</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,27929,27930</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11675592$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tsudzuki, T</creatorcontrib><creatorcontrib>Wakasugi, T</creatorcontrib><creatorcontrib>Sugiura, M</creatorcontrib><title>Comparative analysis of RNA editing sites in higher plant chloroplasts</title><title>Journal of molecular evolution</title><addtitle>J Mol Evol</addtitle><description>Transcripts of land plant chloroplast genomes undergo C-to-U RNA editing. Systematic search disclosed 31 editing sites in tobacco, 27 in maize, and 21 in rice. Based on these identified sites, potential editing sites have been predicted in the transcripts from four angiosperm chloroplast genomes which have been completely sequenced. Most RNA editing events occur in internal codons, which result in amino-acid substitutions. The initiation codon AUG was found to be created from ACG by RNA editing in the transcripts from rpl2, psbL, and ndhD genes. Comparison of editing patterns raises a possibility that many editing sites were acquired in the evolution of angiosperms.</description><subject>Amino acid substitution</subject><subject>Angiosperms</subject><subject>Binding Sites - genetics</subject><subject>Chloroplasts</subject><subject>Chloroplasts - genetics</subject><subject>Chromosome Mapping</subject><subject>Codon, Initiator - genetics</subject><subject>Codons</subject><subject>Evolution, Molecular</subject><subject>Evolutionary biology</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Magnoliopsida - genetics</subject><subject>molecular evolution</subject><subject>ndhD gene</subject><subject>Nicotiana</subject><subject>Oryza sativa</subject><subject>Plant biology</subject><subject>Plants - genetics</subject><subject>psbL gene</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA Editing</subject><subject>RNA, Plant - genetics</subject><subject>RNA, Transfer - genetics</subject><subject>rpl2 gene</subject><subject>Tobacco</subject><subject>Transcription, Genetic</subject><subject>Zea mays</subject><issn>0022-2844</issn><issn>1432-1432</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqF0U9LwzAcBuAgipvTo1cJHsRLNf_aJMcxnAqiIHouSZZuGW1Tk1bYtzdjA9GDXpJAHl6S9wfAOUY3GCF-GxEiVCKEESHkAIwxoyTbLodgnK5IRgRjI3AS4zohnkt6DEYYFzzPJRmD-cw3nQqqd58WqlbVm-gi9BV8fZ5Cu3C9a5cwut5G6Fq4csuVDbCrVdtDs6p98Okc-3gKjipVR3u23yfgfX73NnvInl7uH2fTp8wwVvQZxlhSrpjQynKssFaCKSl1UalKWSNUoS0yosBaS1xxLIlhmpqcUmYTyOkEXO1yu-A_Bhv7snHR2Do9yPohljyVwNLf_oVYpNZSBQle_w0REoKRoiCJXv6iaz-E1FksJRGcoUQTynbIBB9jsFXZBdeosElJ2zBe_phY8hf70EE3dvGt9yOiX7fnjz4</recordid><startdate>20011001</startdate><enddate>20011001</enddate><creator>Tsudzuki, T</creator><creator>Wakasugi, T</creator><creator>Sugiura, M</creator><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7TM</scope><scope>7X8</scope></search><sort><creationdate>20011001</creationdate><title>Comparative analysis of RNA editing sites in higher plant chloroplasts</title><author>Tsudzuki, T ; Wakasugi, T ; Sugiura, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c446t-111937a48bae71a1ba84a99b6fafaec8a6be0c861bb91f7192c4b3c5334efae53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Amino acid substitution</topic><topic>Angiosperms</topic><topic>Binding Sites - genetics</topic><topic>Chloroplasts</topic><topic>Chloroplasts - genetics</topic><topic>Chromosome Mapping</topic><topic>Codon, Initiator - genetics</topic><topic>Codons</topic><topic>Evolution, Molecular</topic><topic>Evolutionary biology</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Magnoliopsida - genetics</topic><topic>molecular evolution</topic><topic>ndhD gene</topic><topic>Nicotiana</topic><topic>Oryza sativa</topic><topic>Plant biology</topic><topic>Plants - genetics</topic><topic>psbL gene</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA Editing</topic><topic>RNA, Plant - genetics</topic><topic>RNA, Transfer - genetics</topic><topic>rpl2 gene</topic><topic>Tobacco</topic><topic>Transcription, Genetic</topic><topic>Zea mays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tsudzuki, T</creatorcontrib><creatorcontrib>Wakasugi, T</creatorcontrib><creatorcontrib>Sugiura, M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>MEDLINE - 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Systematic search disclosed 31 editing sites in tobacco, 27 in maize, and 21 in rice. Based on these identified sites, potential editing sites have been predicted in the transcripts from four angiosperm chloroplast genomes which have been completely sequenced. Most RNA editing events occur in internal codons, which result in amino-acid substitutions. The initiation codon AUG was found to be created from ACG by RNA editing in the transcripts from rpl2, psbL, and ndhD genes. Comparison of editing patterns raises a possibility that many editing sites were acquired in the evolution of angiosperms.</abstract><cop>Germany</cop><pub>Springer Nature B.V</pub><pmid>11675592</pmid><doi>10.1007/s002390010222</doi><tpages>6</tpages></addata></record> |
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| subjects | Amino acid substitution Angiosperms Binding Sites - genetics Chloroplasts Chloroplasts - genetics Chromosome Mapping Codon, Initiator - genetics Codons Evolution, Molecular Evolutionary biology Genomes Genomics Magnoliopsida - genetics molecular evolution ndhD gene Nicotiana Oryza sativa Plant biology Plants - genetics psbL gene Ribonucleic acid RNA RNA Editing RNA, Plant - genetics RNA, Transfer - genetics rpl2 gene Tobacco Transcription, Genetic Zea mays |
| title | Comparative analysis of RNA editing sites in higher plant chloroplasts |
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