Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach
Gene expression in haemocytes of the kuruma prawn (Penaeus japonicus) was investigated using an expressed sequence tag (EST) approach. Partial nucleotide sequences of cDNA library clones constructed from normal and white spot syndrome virus (WSSV)—infected P. japonicus haemocytes were determined. Of...
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description | Gene expression in haemocytes of the kuruma prawn (Penaeus japonicus) was investigated using an expressed sequence tag (EST) approach. Partial nucleotide sequences of cDNA library clones constructed from normal and white spot syndrome virus (WSSV)—infected P. japonicus haemocytes were determined. Of 635 clones obtained from the normal library, 284 (44·7%) significantly matched sequences in GenBank, and of 370 clones obtained from WSSV-infected library, 174 (47·0%) significantly matched sequences in the database. One hundred fifty-two deduced proteins were newly identified. Of these, 28 types were involved in biodefence. For the prophenoloxidase system, there are prophenoloxidase, coagulation factor G-β chain precursor, factor D, Masquarade-like protease, transglutaminase (TGase), clottable protein and eight types of protease inhibitors (two types of antileukoproteinase, alpha-2-macroglobulin, chelonianin, elastase inhibitor, two types of Kazal inhibitor and Kunitz-type inhibitor). For antibacterial peptides, there are bactinecin 11, penaeidin-2 precursor and lysozyme c type. The others defence-related proteins are basophil leukocyte interleukin-3-regulated protein, natural killer enhancing factor (NK-EF), integral membrane protein (CD34+), ESM-1, Notch homologue and Drac homologue. For the adhesion proteins, there are β-integrin, cell adhesion molecule (CAM) and three types of collagens. All ESTs representing protease inhibitors and tumour-related proteins were found only in the WSSV-infected library. Those encoding for apoptotic peptides were expressed at high levels in infected library. The putative defence proteins accounted for 2·7% of total ESTs in a normal shrimp library and 15·7% of the total ESTs in an infected library. |
doi_str_mv | 10.1006/fsim.2001.0382 |
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Partial nucleotide sequences of cDNA library clones constructed from normal and white spot syndrome virus (WSSV)—infected P. japonicus haemocytes were determined. Of 635 clones obtained from the normal library, 284 (44·7%) significantly matched sequences in GenBank, and of 370 clones obtained from WSSV-infected library, 174 (47·0%) significantly matched sequences in the database. One hundred fifty-two deduced proteins were newly identified. Of these, 28 types were involved in biodefence. For the prophenoloxidase system, there are prophenoloxidase, coagulation factor G-β chain precursor, factor D, Masquarade-like protease, transglutaminase (TGase), clottable protein and eight types of protease inhibitors (two types of antileukoproteinase, alpha-2-macroglobulin, chelonianin, elastase inhibitor, two types of Kazal inhibitor and Kunitz-type inhibitor). For antibacterial peptides, there are bactinecin 11, penaeidin-2 precursor and lysozyme c type. The others defence-related proteins are basophil leukocyte interleukin-3-regulated protein, natural killer enhancing factor (NK-EF), integral membrane protein (CD34+), ESM-1, Notch homologue and Drac homologue. For the adhesion proteins, there are β-integrin, cell adhesion molecule (CAM) and three types of collagens. All ESTs representing protease inhibitors and tumour-related proteins were found only in the WSSV-infected library. Those encoding for apoptotic peptides were expressed at high levels in infected library. The putative defence proteins accounted for 2·7% of total ESTs in a normal shrimp library and 15·7% of the total ESTs in an infected library.</description><identifier>ISSN: 1050-4648</identifier><identifier>EISSN: 1095-9947</identifier><identifier>DOI: 10.1006/fsim.2001.0382</identifier><identifier>PMID: 12201653</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Amino Acid Sequence ; Animals ; Base Sequence ; DNA Viruses - genetics ; Expressed Sequence Tags ; expressed sequence tags (ESTs), Penaeus japonicus, biodefence, haemocytes, white spot syndrome virus (WSSV), viral infection ; Gene Expression Regulation, Viral ; Gene Library ; Hemocytes - immunology ; Hemocytes - virology ; Marine ; Molecular Sequence Data ; Penaeidae - immunology ; Penaeidae - virology ; Penaeus japonicus ; Peptides - chemistry ; Peptides - immunology ; Sequence Analysis, DNA - veterinary ; Sequence Homology ; White spot syndrome virus</subject><ispartof>Fish & shellfish immunology, 2002-07, Vol.13 (1), p.69-83</ispartof><rights>2002 Elsevier Science Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c404t-73cd7891867ece7541cdf72a1259e59c4de9aadbae1dab9e60aab63dc19e108d3</citedby><cites>FETCH-LOGICAL-c404t-73cd7891867ece7541cdf72a1259e59c4de9aadbae1dab9e60aab63dc19e108d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1050464801903821$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12201653$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rojtinnakorn, Jiraporn</creatorcontrib><creatorcontrib>Hirono, Ikuo</creatorcontrib><creatorcontrib>Itami, Toshiaki</creatorcontrib><creatorcontrib>Takahashi, Yukinori</creatorcontrib><creatorcontrib>Aoki, Takashi</creatorcontrib><title>Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach</title><title>Fish & shellfish immunology</title><addtitle>Fish Shellfish Immunol</addtitle><description>Gene expression in haemocytes of the kuruma prawn (Penaeus japonicus) was investigated using an expressed sequence tag (EST) approach. Partial nucleotide sequences of cDNA library clones constructed from normal and white spot syndrome virus (WSSV)—infected P. japonicus haemocytes were determined. Of 635 clones obtained from the normal library, 284 (44·7%) significantly matched sequences in GenBank, and of 370 clones obtained from WSSV-infected library, 174 (47·0%) significantly matched sequences in the database. One hundred fifty-two deduced proteins were newly identified. Of these, 28 types were involved in biodefence. For the prophenoloxidase system, there are prophenoloxidase, coagulation factor G-β chain precursor, factor D, Masquarade-like protease, transglutaminase (TGase), clottable protein and eight types of protease inhibitors (two types of antileukoproteinase, alpha-2-macroglobulin, chelonianin, elastase inhibitor, two types of Kazal inhibitor and Kunitz-type inhibitor). For antibacterial peptides, there are bactinecin 11, penaeidin-2 precursor and lysozyme c type. The others defence-related proteins are basophil leukocyte interleukin-3-regulated protein, natural killer enhancing factor (NK-EF), integral membrane protein (CD34+), ESM-1, Notch homologue and Drac homologue. For the adhesion proteins, there are β-integrin, cell adhesion molecule (CAM) and three types of collagens. All ESTs representing protease inhibitors and tumour-related proteins were found only in the WSSV-infected library. Those encoding for apoptotic peptides were expressed at high levels in infected library. The putative defence proteins accounted for 2·7% of total ESTs in a normal shrimp library and 15·7% of the total ESTs in an infected library.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>DNA Viruses - genetics</subject><subject>Expressed Sequence Tags</subject><subject>expressed sequence tags (ESTs), Penaeus japonicus, biodefence, haemocytes, white spot syndrome virus (WSSV), viral infection</subject><subject>Gene Expression Regulation, Viral</subject><subject>Gene Library</subject><subject>Hemocytes - immunology</subject><subject>Hemocytes - virology</subject><subject>Marine</subject><subject>Molecular Sequence Data</subject><subject>Penaeidae - immunology</subject><subject>Penaeidae - virology</subject><subject>Penaeus japonicus</subject><subject>Peptides - chemistry</subject><subject>Peptides - immunology</subject><subject>Sequence Analysis, DNA - veterinary</subject><subject>Sequence Homology</subject><subject>White spot syndrome virus</subject><issn>1050-4648</issn><issn>1095-9947</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFv1DAQRi1ERUvLtUfkE-LQLHbiOPYRVaUgVWqlLeVoTeyJ1mUTBzuh7L_H0a7UE_Rkj_S-z9Y8Qs45W3HG5Kcu-X5VMsZXrFLlK3LCma4LrUXzernXrBBSqGPyNqVHlgOVZG_IMS9LxmVdnZDpGgek-GeMmJIPA_UD3QD2we4mTDR09Occ5x7oGOFpuKB3OADOiT7CGAZv53SxJHI4jwnpFPLYoZ2Wqic_beiP9fqBtjt6tb6nMI4xgN2ckaMOtgnfHc5T8v3L1f3l1-Lm9vrb5eebwgompqKprGuU5ko2aLGpBbeua0rgZa2x1lY41ACuBeQOWo2SAbSycpZr5Ey56pR82PfmZ3_NmCbT-2Rxu4UBw5xMU7JKK1W-CHIleFNpkcGP_welrEX-r-YZXe1RG0NKETszRt9D3BnOzOLOLO7M4s4s7nLg_aF7bnt0z_hBVgbUHsC8s98eo0nW42DR-ZhXblzw_-r-C7QZqXQ</recordid><startdate>20020701</startdate><enddate>20020701</enddate><creator>Rojtinnakorn, Jiraporn</creator><creator>Hirono, Ikuo</creator><creator>Itami, Toshiaki</creator><creator>Takahashi, Yukinori</creator><creator>Aoki, Takashi</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T5</scope><scope>7TN</scope><scope>7U9</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20020701</creationdate><title>Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach</title><author>Rojtinnakorn, Jiraporn ; Hirono, Ikuo ; Itami, Toshiaki ; Takahashi, Yukinori ; Aoki, Takashi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c404t-73cd7891867ece7541cdf72a1259e59c4de9aadbae1dab9e60aab63dc19e108d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>DNA Viruses - genetics</topic><topic>Expressed Sequence Tags</topic><topic>expressed sequence tags (ESTs), Penaeus japonicus, biodefence, haemocytes, white spot syndrome virus (WSSV), viral infection</topic><topic>Gene Expression Regulation, Viral</topic><topic>Gene Library</topic><topic>Hemocytes - immunology</topic><topic>Hemocytes - virology</topic><topic>Marine</topic><topic>Molecular Sequence Data</topic><topic>Penaeidae - immunology</topic><topic>Penaeidae - virology</topic><topic>Penaeus japonicus</topic><topic>Peptides - chemistry</topic><topic>Peptides - immunology</topic><topic>Sequence Analysis, DNA - veterinary</topic><topic>Sequence Homology</topic><topic>White spot syndrome virus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rojtinnakorn, Jiraporn</creatorcontrib><creatorcontrib>Hirono, Ikuo</creatorcontrib><creatorcontrib>Itami, Toshiaki</creatorcontrib><creatorcontrib>Takahashi, Yukinori</creatorcontrib><creatorcontrib>Aoki, Takashi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Immunology Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Fish & shellfish immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rojtinnakorn, Jiraporn</au><au>Hirono, Ikuo</au><au>Itami, Toshiaki</au><au>Takahashi, Yukinori</au><au>Aoki, Takashi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach</atitle><jtitle>Fish & shellfish immunology</jtitle><addtitle>Fish Shellfish Immunol</addtitle><date>2002-07-01</date><risdate>2002</risdate><volume>13</volume><issue>1</issue><spage>69</spage><epage>83</epage><pages>69-83</pages><issn>1050-4648</issn><eissn>1095-9947</eissn><abstract>Gene expression in haemocytes of the kuruma prawn (Penaeus japonicus) was investigated using an expressed sequence tag (EST) approach. Partial nucleotide sequences of cDNA library clones constructed from normal and white spot syndrome virus (WSSV)—infected P. japonicus haemocytes were determined. Of 635 clones obtained from the normal library, 284 (44·7%) significantly matched sequences in GenBank, and of 370 clones obtained from WSSV-infected library, 174 (47·0%) significantly matched sequences in the database. One hundred fifty-two deduced proteins were newly identified. Of these, 28 types were involved in biodefence. For the prophenoloxidase system, there are prophenoloxidase, coagulation factor G-β chain precursor, factor D, Masquarade-like protease, transglutaminase (TGase), clottable protein and eight types of protease inhibitors (two types of antileukoproteinase, alpha-2-macroglobulin, chelonianin, elastase inhibitor, two types of Kazal inhibitor and Kunitz-type inhibitor). For antibacterial peptides, there are bactinecin 11, penaeidin-2 precursor and lysozyme c type. The others defence-related proteins are basophil leukocyte interleukin-3-regulated protein, natural killer enhancing factor (NK-EF), integral membrane protein (CD34+), ESM-1, Notch homologue and Drac homologue. For the adhesion proteins, there are β-integrin, cell adhesion molecule (CAM) and three types of collagens. All ESTs representing protease inhibitors and tumour-related proteins were found only in the WSSV-infected library. Those encoding for apoptotic peptides were expressed at high levels in infected library. The putative defence proteins accounted for 2·7% of total ESTs in a normal shrimp library and 15·7% of the total ESTs in an infected library.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>12201653</pmid><doi>10.1006/fsim.2001.0382</doi><tpages>15</tpages></addata></record> |
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subjects | Amino Acid Sequence Animals Base Sequence DNA Viruses - genetics Expressed Sequence Tags expressed sequence tags (ESTs), Penaeus japonicus, biodefence, haemocytes, white spot syndrome virus (WSSV), viral infection Gene Expression Regulation, Viral Gene Library Hemocytes - immunology Hemocytes - virology Marine Molecular Sequence Data Penaeidae - immunology Penaeidae - virology Penaeus japonicus Peptides - chemistry Peptides - immunology Sequence Analysis, DNA - veterinary Sequence Homology White spot syndrome virus |
title | Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach |
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