Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences
Three different genes were sequenced from isolates of five plant-pathogenic Verticillium species, Verticillium albo-atrum, Verticillium dahliae, Verticillium longisporum, Verticillium nigrescens, and Verticillium tricorpus. The sequences covered parts of the mitochondrial cytochrome b gene (cob), th...
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| Veröffentlicht in: | Archives of microbiology 2004-06, Vol.181 (6), p.435-442 |
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| description | Three different genes were sequenced from isolates of five plant-pathogenic Verticillium species, Verticillium albo-atrum, Verticillium dahliae, Verticillium longisporum, Verticillium nigrescens, and Verticillium tricorpus. The sequences covered parts of the mitochondrial cytochrome b gene (cob), the mitochondrial small subunit rRNA gene (rns) and the nuclear ITS2 region. When the sequences were combined, the five species clustered in five monophyletic groups, with V. nigrescens distantly related to the other species while V. tricorpus displayed a somewhat closer relationship to the three remaining species. V. albo-atrum, V. dahliae and V. longisporum were found to be very similar to each other, with V. albo-atrum and V. longisporum displaying the closest relationship. The species affiliation of V. longisporum is discussed. |
| doi_str_mv | 10.1007/s00203-004-0677-1 |
| format | Article |
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The sequences covered parts of the mitochondrial cytochrome b gene (cob), the mitochondrial small subunit rRNA gene (rns) and the nuclear ITS2 region. When the sequences were combined, the five species clustered in five monophyletic groups, with V. nigrescens distantly related to the other species while V. tricorpus displayed a somewhat closer relationship to the three remaining species. V. albo-atrum, V. dahliae and V. longisporum were found to be very similar to each other, with V. albo-atrum and V. longisporum displaying the closest relationship. The species affiliation of V. longisporum is discussed.</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-004-0677-1</identifier><identifier>PMID: 15138663</identifier><identifier>CODEN: AMICCW</identifier><language>eng</language><publisher>Heidelberg: Springer</publisher><subject>Bacteria ; Biological and medical sciences ; Cytochromes b - genetics ; DNA, Fungal - chemistry ; DNA, Fungal - isolation & purification ; DNA, Mitochondrial - chemistry ; DNA, Mitochondrial - isolation & purification ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - isolation & purification ; DNA, Ribosomal Spacer - genetics ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Mycology ; Phylogeny ; plant pathogenic fungi ; Sequence Analysis, DNA ; Verticillium ; Verticillium - classification ; Verticillium - genetics ; Verticillium - isolation & purification ; Verticillium albo-atrum ; Verticillium dahliae ; Verticillium longisporum ; Verticillium nigrescens ; Verticillium tricorpus</subject><ispartof>Archives of microbiology, 2004-06, Vol.181 (6), p.435-442</ispartof><rights>2004 INIST-CNRS</rights><rights>Springer-Verlag 2004</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c409t-c1b61a1346288d7ed5a8705b9e8ae4a05aaa7ef700d891408ff37ab2fe3f835b3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15855227$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15138663$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fahleson, J</creatorcontrib><creatorcontrib>Hu, Q</creatorcontrib><creatorcontrib>Dixelius, C</creatorcontrib><title>Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><description>Three different genes were sequenced from isolates of five plant-pathogenic Verticillium species, Verticillium albo-atrum, Verticillium dahliae, Verticillium longisporum, Verticillium nigrescens, and Verticillium tricorpus. The sequences covered parts of the mitochondrial cytochrome b gene (cob), the mitochondrial small subunit rRNA gene (rns) and the nuclear ITS2 region. When the sequences were combined, the five species clustered in five monophyletic groups, with V. nigrescens distantly related to the other species while V. tricorpus displayed a somewhat closer relationship to the three remaining species. V. albo-atrum, V. dahliae and V. longisporum were found to be very similar to each other, with V. albo-atrum and V. longisporum displaying the closest relationship. 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Psychology</subject><subject>Genes, rRNA</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Mycology</subject><subject>Phylogeny</subject><subject>plant pathogenic fungi</subject><subject>Sequence Analysis, DNA</subject><subject>Verticillium</subject><subject>Verticillium - classification</subject><subject>Verticillium - genetics</subject><subject>Verticillium - isolation & purification</subject><subject>Verticillium albo-atrum</subject><subject>Verticillium dahliae</subject><subject>Verticillium longisporum</subject><subject>Verticillium nigrescens</subject><subject>Verticillium tricorpus</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqF0cGKFDEQBuAgiju7-gBetBH01lpJOp30URZdhQUFXREvoTpd2c2S7ozJ9GHe3gwzoHjxFAjfXwn1M_aMwxsOoN8WAAGyBeha6LVu-QO24Z0ULWjx4yHbgATRmkHKM3Zeyj0AF8aYx-yMKy5N38sN-_nlbh_TLS20C67BBeO-hNIk33ynXK9CjGGdm7IlF6g0IxaamrQ0y-oiYa6JqZnDLrm7tEw5YGwK_VppcVSesEceY6Gnp_OC3Xx4_-3yY3v9-erT5bvr1nUw7FrHx54jl11fPzdpmhQaDWocyCB1CAoRNXkNMJmBd2C8lxpH4Ul6I9UoL9jr49xtTvXpsrNzKI5ixIXSWqwWAMbI7r-Qaw2DGYYKX_4D79Oa626KNaCVMnzgFfEjcjmVksnbbQ4z5r3lYA_12GM9ttZjD_XYQ-b5afA6zjT9SZz6qODVCWBxGH3GxYXylzNKCaGre3F0HpPF21zNzVcBXAIMCiQ38jfVv6FV</recordid><startdate>20040601</startdate><enddate>20040601</enddate><creator>Fahleson, J</creator><creator>Hu, Q</creator><creator>Dixelius, C</creator><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20040601</creationdate><title>Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences</title><author>Fahleson, J ; Hu, Q ; Dixelius, C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c409t-c1b61a1346288d7ed5a8705b9e8ae4a05aaa7ef700d891408ff37ab2fe3f835b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Bacteria</topic><topic>Biological and medical sciences</topic><topic>Cytochromes b - genetics</topic><topic>DNA, Fungal - chemistry</topic><topic>DNA, Fungal - isolation & purification</topic><topic>DNA, Mitochondrial - chemistry</topic><topic>DNA, Mitochondrial - isolation & purification</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - isolation & purification</topic><topic>DNA, Ribosomal Spacer - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Mycology</topic><topic>Phylogeny</topic><topic>plant pathogenic fungi</topic><topic>Sequence Analysis, DNA</topic><topic>Verticillium</topic><topic>Verticillium - classification</topic><topic>Verticillium - genetics</topic><topic>Verticillium - isolation & purification</topic><topic>Verticillium albo-atrum</topic><topic>Verticillium dahliae</topic><topic>Verticillium longisporum</topic><topic>Verticillium nigrescens</topic><topic>Verticillium tricorpus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fahleson, J</creatorcontrib><creatorcontrib>Hu, Q</creatorcontrib><creatorcontrib>Dixelius, C</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fahleson, J</au><au>Hu, Q</au><au>Dixelius, C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences</atitle><jtitle>Archives of microbiology</jtitle><addtitle>Arch Microbiol</addtitle><date>2004-06-01</date><risdate>2004</risdate><volume>181</volume><issue>6</issue><spage>435</spage><epage>442</epage><pages>435-442</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><coden>AMICCW</coden><abstract>Three different genes were sequenced from isolates of five plant-pathogenic Verticillium species, Verticillium albo-atrum, Verticillium dahliae, Verticillium longisporum, Verticillium nigrescens, and Verticillium tricorpus. The sequences covered parts of the mitochondrial cytochrome b gene (cob), the mitochondrial small subunit rRNA gene (rns) and the nuclear ITS2 region. When the sequences were combined, the five species clustered in five monophyletic groups, with V. nigrescens distantly related to the other species while V. tricorpus displayed a somewhat closer relationship to the three remaining species. V. albo-atrum, V. dahliae and V. longisporum were found to be very similar to each other, with V. albo-atrum and V. longisporum displaying the closest relationship. The species affiliation of V. longisporum is discussed.</abstract><cop>Heidelberg</cop><cop>Berlin</cop><pub>Springer</pub><pmid>15138663</pmid><doi>10.1007/s00203-004-0677-1</doi><tpages>8</tpages></addata></record> |
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| subjects | Bacteria Biological and medical sciences Cytochromes b - genetics DNA, Fungal - chemistry DNA, Fungal - isolation & purification DNA, Mitochondrial - chemistry DNA, Mitochondrial - isolation & purification DNA, Ribosomal - chemistry DNA, Ribosomal - isolation & purification DNA, Ribosomal Spacer - genetics Fundamental and applied biological sciences. Psychology Genes, rRNA Microbiology Miscellaneous Molecular Sequence Data Mycology Phylogeny plant pathogenic fungi Sequence Analysis, DNA Verticillium Verticillium - classification Verticillium - genetics Verticillium - isolation & purification Verticillium albo-atrum Verticillium dahliae Verticillium longisporum Verticillium nigrescens Verticillium tricorpus |
| title | Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences |
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