De Novo DNA Synthesis by Human DNA Polymerase λ, DNA Polymerase μ and Terminal Deoxyribonucleotidyl Transferase
DNA polymerases (pols) catalyse the synthesis of DNA. This reaction requires a primer-template DNA in order to grow from the 3′OH end of the primer along the template. On the other hand terminal deoxyribonucleotidyl transferase (TdT) catalyses the addition of nucleotides at the 3′OH end of a DNA str...
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Veröffentlicht in: | Journal of molecular biology 2004-05, Vol.339 (2), p.395-404 |
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creator | Ramadan, Kristijan Shevelev, Igor V Maga, Giovanni Hübscher, Ulrich |
description | DNA polymerases (pols) catalyse the synthesis of DNA. This reaction requires a primer-template DNA in order to grow from the 3′OH end of the primer along the template. On the other hand terminal deoxyribonucleotidyl transferase (TdT) catalyses the addition of nucleotides at the 3′OH end of a DNA strand, without the need of a template. Pol λ and pol μ are ubiquitous enzymes, possess both DNA polymerase and terminal deoxyribonucleotidyl transferase activities and belong to pol X family, together with pol β and TdT. Here we show that pol λ, pol μ and TdT, all possess the ability to synthesise
in vitro short fragments of DNA in the absence of a primer-template or even a primer or a template in the reaction. The DNA synthesised
de novo by pol λ, pol μ and TdT appears to have an unusual structure. Furthermore we found that the amino acid Phe506 of pol λ is essential for the
de novo synthesis. This novel catalytic activity might be related to the proposed functions of these three pol X family members in DNA repair and DNA recombination. |
doi_str_mv | 10.1016/j.jmb.2004.03.056 |
format | Article |
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in vitro short fragments of DNA in the absence of a primer-template or even a primer or a template in the reaction. The DNA synthesised
de novo by pol λ, pol μ and TdT appears to have an unusual structure. Furthermore we found that the amino acid Phe506 of pol λ is essential for the
de novo synthesis. This novel catalytic activity might be related to the proposed functions of these three pol X family members in DNA repair and DNA recombination.</description><identifier>ISSN: 0022-2836</identifier><identifier>EISSN: 1089-8638</identifier><identifier>DOI: 10.1016/j.jmb.2004.03.056</identifier><identifier>PMID: 15136041</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Base Sequence ; Cloning, Molecular ; de novo DNA synthesis ; DNA Polymerase beta - genetics ; DNA Polymerase beta - metabolism ; DNA polymerase λ ; DNA polymerase μ ; DNA Primers ; DNA repair ; DNA Replication ; DNA-Directed DNA Polymerase - genetics ; DNA-Directed DNA Polymerase - metabolism ; Humans ; terminal deoxyribonucleotidyl transferase</subject><ispartof>Journal of molecular biology, 2004-05, Vol.339 (2), p.395-404</ispartof><rights>2004 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c380t-f417f0dffa90f73744462539214ea9759deb679e5eb3f4f39b275e74e354d1ef3</citedby><cites>FETCH-LOGICAL-c380t-f417f0dffa90f73744462539214ea9759deb679e5eb3f4f39b275e74e354d1ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.jmb.2004.03.056$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15136041$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ramadan, Kristijan</creatorcontrib><creatorcontrib>Shevelev, Igor V</creatorcontrib><creatorcontrib>Maga, Giovanni</creatorcontrib><creatorcontrib>Hübscher, Ulrich</creatorcontrib><title>De Novo DNA Synthesis by Human DNA Polymerase λ, DNA Polymerase μ and Terminal Deoxyribonucleotidyl Transferase</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>DNA polymerases (pols) catalyse the synthesis of DNA. This reaction requires a primer-template DNA in order to grow from the 3′OH end of the primer along the template. On the other hand terminal deoxyribonucleotidyl transferase (TdT) catalyses the addition of nucleotides at the 3′OH end of a DNA strand, without the need of a template. Pol λ and pol μ are ubiquitous enzymes, possess both DNA polymerase and terminal deoxyribonucleotidyl transferase activities and belong to pol X family, together with pol β and TdT. Here we show that pol λ, pol μ and TdT, all possess the ability to synthesise
in vitro short fragments of DNA in the absence of a primer-template or even a primer or a template in the reaction. The DNA synthesised
de novo by pol λ, pol μ and TdT appears to have an unusual structure. Furthermore we found that the amino acid Phe506 of pol λ is essential for the
de novo synthesis. This novel catalytic activity might be related to the proposed functions of these three pol X family members in DNA repair and DNA recombination.</description><subject>Base Sequence</subject><subject>Cloning, Molecular</subject><subject>de novo DNA synthesis</subject><subject>DNA Polymerase beta - genetics</subject><subject>DNA Polymerase beta - metabolism</subject><subject>DNA polymerase λ</subject><subject>DNA polymerase μ</subject><subject>DNA Primers</subject><subject>DNA repair</subject><subject>DNA Replication</subject><subject>DNA-Directed DNA Polymerase - genetics</subject><subject>DNA-Directed DNA Polymerase - metabolism</subject><subject>Humans</subject><subject>terminal deoxyribonucleotidyl transferase</subject><issn>0022-2836</issn><issn>1089-8638</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1O3DAUha2qqEyhD9AN8qqrJlz_5UddoRkolRBU6rC2nORaeJTEYCeIPFt5Bp6pgRmJBVJZXenoO2dxP0K-MkgZsOx4k266KuUAMgWRgso-kAWDokyKTBQfyQKA84QXItsnn2PcAIASsvhE9pliIgPJFuRuhfTS33u6ujyhf6Z-uMHoIq0mej52pn-Jf_t26jCYiPTp7_c30SM1fUPXGDrXm5au0D9MwVW-H-sW_eCaqaXrYPpoXwqHZM-aNuKX3T0g12en6-V5cnH189fy5CKpRQFDYiXLLTTWmhJsLnIpZcaVKDmTaMpclQ1WWV6iwkpYaUVZ8VxhLlEo2TC04oB82-7eBn83Yhx052KNbWt69GPUOSsZLxh_F2QFzD9UagbZFqyDjzGg1bfBdSZMmoF-FqI3ehain4VoEHoWMneOduNj1WHz2tgZmIEfWwDnX9w7DDrWDvsaGxewHnTj3X_m_wEEXZxT</recordid><startdate>20040528</startdate><enddate>20040528</enddate><creator>Ramadan, Kristijan</creator><creator>Shevelev, Igor V</creator><creator>Maga, Giovanni</creator><creator>Hübscher, Ulrich</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7TM</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20040528</creationdate><title>De Novo DNA Synthesis by Human DNA Polymerase λ, DNA Polymerase μ and Terminal Deoxyribonucleotidyl Transferase</title><author>Ramadan, Kristijan ; Shevelev, Igor V ; Maga, Giovanni ; Hübscher, Ulrich</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c380t-f417f0dffa90f73744462539214ea9759deb679e5eb3f4f39b275e74e354d1ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Base Sequence</topic><topic>Cloning, Molecular</topic><topic>de novo DNA synthesis</topic><topic>DNA Polymerase beta - genetics</topic><topic>DNA Polymerase beta - metabolism</topic><topic>DNA polymerase λ</topic><topic>DNA polymerase μ</topic><topic>DNA Primers</topic><topic>DNA repair</topic><topic>DNA Replication</topic><topic>DNA-Directed DNA Polymerase - genetics</topic><topic>DNA-Directed DNA Polymerase - metabolism</topic><topic>Humans</topic><topic>terminal deoxyribonucleotidyl transferase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ramadan, Kristijan</creatorcontrib><creatorcontrib>Shevelev, Igor V</creatorcontrib><creatorcontrib>Maga, Giovanni</creatorcontrib><creatorcontrib>Hübscher, Ulrich</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Nucleic Acids Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ramadan, Kristijan</au><au>Shevelev, Igor V</au><au>Maga, Giovanni</au><au>Hübscher, Ulrich</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>De Novo DNA Synthesis by Human DNA Polymerase λ, DNA Polymerase μ and Terminal Deoxyribonucleotidyl Transferase</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>2004-05-28</date><risdate>2004</risdate><volume>339</volume><issue>2</issue><spage>395</spage><epage>404</epage><pages>395-404</pages><issn>0022-2836</issn><eissn>1089-8638</eissn><abstract>DNA polymerases (pols) catalyse the synthesis of DNA. This reaction requires a primer-template DNA in order to grow from the 3′OH end of the primer along the template. On the other hand terminal deoxyribonucleotidyl transferase (TdT) catalyses the addition of nucleotides at the 3′OH end of a DNA strand, without the need of a template. Pol λ and pol μ are ubiquitous enzymes, possess both DNA polymerase and terminal deoxyribonucleotidyl transferase activities and belong to pol X family, together with pol β and TdT. Here we show that pol λ, pol μ and TdT, all possess the ability to synthesise
in vitro short fragments of DNA in the absence of a primer-template or even a primer or a template in the reaction. The DNA synthesised
de novo by pol λ, pol μ and TdT appears to have an unusual structure. Furthermore we found that the amino acid Phe506 of pol λ is essential for the
de novo synthesis. This novel catalytic activity might be related to the proposed functions of these three pol X family members in DNA repair and DNA recombination.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>15136041</pmid><doi>10.1016/j.jmb.2004.03.056</doi><tpages>10</tpages></addata></record> |
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subjects | Base Sequence Cloning, Molecular de novo DNA synthesis DNA Polymerase beta - genetics DNA Polymerase beta - metabolism DNA polymerase λ DNA polymerase μ DNA Primers DNA repair DNA Replication DNA-Directed DNA Polymerase - genetics DNA-Directed DNA Polymerase - metabolism Humans terminal deoxyribonucleotidyl transferase |
title | De Novo DNA Synthesis by Human DNA Polymerase λ, DNA Polymerase μ and Terminal Deoxyribonucleotidyl Transferase |
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