A Large Case-Control Study of Cervical Cancer Risk Associated with Human Papillomavirus Infection in Japan, by Nucleotide Sequencing-Based Genotyping
Using nucleotide sequencing-based genotyping, we conducted a case-control study to examine cervical cancer risk associated with human papillomavirus (HPV) infection in a Japanese population. A consensus primer pair was used to amplify DNA from the L1 region of HPV by polymerase chain reaction (PCR)....
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| Veröffentlicht in: | The Journal of infectious diseases 2004-05, Vol.189 (10), p.1829-1832 |
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| container_title | The Journal of infectious diseases |
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| creator | Asato, Tsuyoshi Maehama, Toshiyuki Nagai, Yutaka Kanazawa, Koji Uezato, Hiroshi Kariya, Ken-ichi |
| description | Using nucleotide sequencing-based genotyping, we conducted a case-control study to examine cervical cancer risk associated with human papillomavirus (HPV) infection in a Japanese population. A consensus primer pair was used to amplify DNA from the L1 region of HPV by polymerase chain reaction (PCR). By PCR, 311 of 356 patients with cervical cancer and 333 of 3249 control individuals were positive for HPV. By the direct sequencing of PCR products, nucleotide sequences of 30 genotypes were obtained. A high incidence of type 52 and a low incidence of type 16 were characteristic of the control group. Odds ratios were estimated for 18 genotypes. Types 71, 90, and 91, previously uncharacterized, were classified as low-risk genotypes, which is consistent with predictions made on the basis of phylogeny. The present study is the first large case-control study of its kind to use nucleotide sequencing-based genotyping. |
| doi_str_mv | 10.1086/382896 |
| format | Article |
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A consensus primer pair was used to amplify DNA from the L1 region of HPV by polymerase chain reaction (PCR). By PCR, 311 of 356 patients with cervical cancer and 333 of 3249 control individuals were positive for HPV. By the direct sequencing of PCR products, nucleotide sequences of 30 genotypes were obtained. A high incidence of type 52 and a low incidence of type 16 were characteristic of the control group. Odds ratios were estimated for 18 genotypes. Types 71, 90, and 91, previously uncharacterized, were classified as low-risk genotypes, which is consistent with predictions made on the basis of phylogeny. The present study is the first large case-control study of its kind to use nucleotide sequencing-based genotyping.</description><identifier>ISSN: 0022-1899</identifier><identifier>EISSN: 1537-6613</identifier><identifier>DOI: 10.1086/382896</identifier><identifier>PMID: 15122519</identifier><identifier>CODEN: JIDIAQ</identifier><language>eng</language><publisher>Chicago, IL: The University of Chicago Press</publisher><subject>Adult ; Aged ; Aged, 80 and over ; Average age ; Biological and medical sciences ; Carcinoma, Squamous Cell - epidemiology ; Carcinoma, Squamous Cell - virology ; Case control studies ; Cervical cancer ; DNA ; DNA, Viral - chemistry ; DNA, Viral - genetics ; Female ; Fundamental and applied biological sciences. Psychology ; Genotype ; Genotypes ; Human papillomavirus ; Humans ; Infectious diseases ; Japan - epidemiology ; Medical sciences ; Microbiology ; Middle Aged ; Miscellaneous ; Nucleotides ; Papillomaviridae - genetics ; Papillomavirus infections ; Papillomavirus Infections - epidemiology ; Papillomavirus Infections - virology ; Phylogeny ; Polymerase Chain Reaction ; Sequence Analysis, DNA ; Sequencing ; Tumor Virus Infections - epidemiology ; Tumor Virus Infections - virology ; Tumors ; Uterine Cervical Neoplasms - epidemiology ; Uterine Cervical Neoplasms - virology ; Virology ; Viruses</subject><ispartof>The Journal of infectious diseases, 2004-05, Vol.189 (10), p.1829-1832</ispartof><rights>Copyright 2004 Infectious Diseases Society of America</rights><rights>2004 by the Infectious Diseases Society of America 2004</rights><rights>2004 INIST-CNRS</rights><rights>Copyright University of Chicago, acting through its Press May 15 2004</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c481t-dcfb1895e2a1ea67fea527b3e27a2b519cefff1aafe938819d309889642e8a973</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/30077080$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/30077080$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,58017,58250</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15870526$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15122519$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Asato, Tsuyoshi</creatorcontrib><creatorcontrib>Maehama, Toshiyuki</creatorcontrib><creatorcontrib>Nagai, Yutaka</creatorcontrib><creatorcontrib>Kanazawa, Koji</creatorcontrib><creatorcontrib>Uezato, Hiroshi</creatorcontrib><creatorcontrib>Kariya, Ken-ichi</creatorcontrib><title>A Large Case-Control Study of Cervical Cancer Risk Associated with Human Papillomavirus Infection in Japan, by Nucleotide Sequencing-Based Genotyping</title><title>The Journal of infectious diseases</title><addtitle>J Infect Dis</addtitle><addtitle>J Infect Dis</addtitle><description>Using nucleotide sequencing-based genotyping, we conducted a case-control study to examine cervical cancer risk associated with human papillomavirus (HPV) infection in a Japanese population. 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The present study is the first large case-control study of its kind to use nucleotide sequencing-based genotyping.</description><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Average age</subject><subject>Biological and medical sciences</subject><subject>Carcinoma, Squamous Cell - epidemiology</subject><subject>Carcinoma, Squamous Cell - virology</subject><subject>Case control studies</subject><subject>Cervical cancer</subject><subject>DNA</subject><subject>DNA, Viral - chemistry</subject><subject>DNA, Viral - genetics</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Human papillomavirus</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Japan - epidemiology</subject><subject>Medical sciences</subject><subject>Microbiology</subject><subject>Middle Aged</subject><subject>Miscellaneous</subject><subject>Nucleotides</subject><subject>Papillomaviridae - genetics</subject><subject>Papillomavirus infections</subject><subject>Papillomavirus Infections - epidemiology</subject><subject>Papillomavirus Infections - virology</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>Sequence Analysis, DNA</subject><subject>Sequencing</subject><subject>Tumor Virus Infections - epidemiology</subject><subject>Tumor Virus Infections - virology</subject><subject>Tumors</subject><subject>Uterine Cervical Neoplasms - epidemiology</subject><subject>Uterine Cervical Neoplasms - virology</subject><subject>Virology</subject><subject>Viruses</subject><issn>0022-1899</issn><issn>1537-6613</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkd1uEzEQhVcIREOBNwAZJLhiwT_ZtX2ZprQpCj-iICFuLMc7Lk537cXeLeRBeF8cJWoREuJqJJ9PZ-b4FMVDgl8SLOpXTFAh61vFhFSMl3VN2O1igjGlJRFSHhT3UlpjjKes5neLA1IRSisiJ8WvGVrqeAForhOU8-CHGFp0PozNBgWL5hCvnNFtlr2BiD66dIlmKQXj9AAN-uGGb2gxdtqjD7p3bRs6feXimNCZt2AGFzxyHr3RvfYv0GqD3o2mhTC4BtA5fB_BG-cvyqO8vEGn4MOw6fPD_eKO1W2CB_t5WHw-ef1pviiX70_P5rNlaaaCDGVj7CrHq4BqArrmFnRF-YoB5Zqucj4D1lqitQXJhCCyYViK_E9TCkJLzg6L5zvfPoZ8TBpU55KBttUewpgUz-41IeS_IOFSVoRvwad_geswRp9DKEqZxNV0Km_cTAwpRbCqj67TcaMIVts61a7ODD7eu42rDpobbN9fBp7tAZ1yTTbmmlz6gxMcV3Rr9GTHhbH_97JHO2adhhCvKYYx51jgrJc73aUBfl7rOl6qmjNeqcWXr-rkSEh8fCzUW_YbaJfJ1g</recordid><startdate>20040515</startdate><enddate>20040515</enddate><creator>Asato, Tsuyoshi</creator><creator>Maehama, Toshiyuki</creator><creator>Nagai, Yutaka</creator><creator>Kanazawa, Koji</creator><creator>Uezato, Hiroshi</creator><creator>Kariya, Ken-ichi</creator><general>The University of Chicago Press</general><general>University of Chicago Press</general><general>Oxford University Press</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>NAPCQ</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>20040515</creationdate><title>A Large Case-Control Study of Cervical Cancer Risk Associated with Human Papillomavirus Infection in Japan, by Nucleotide Sequencing-Based Genotyping</title><author>Asato, Tsuyoshi ; Maehama, Toshiyuki ; Nagai, Yutaka ; Kanazawa, Koji ; Uezato, Hiroshi ; Kariya, Ken-ichi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c481t-dcfb1895e2a1ea67fea527b3e27a2b519cefff1aafe938819d309889642e8a973</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Average age</topic><topic>Biological and medical sciences</topic><topic>Carcinoma, Squamous Cell - epidemiology</topic><topic>Carcinoma, Squamous Cell - virology</topic><topic>Case control studies</topic><topic>Cervical cancer</topic><topic>DNA</topic><topic>DNA, Viral - chemistry</topic><topic>DNA, Viral - genetics</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Human papillomavirus</topic><topic>Humans</topic><topic>Infectious diseases</topic><topic>Japan - epidemiology</topic><topic>Medical sciences</topic><topic>Microbiology</topic><topic>Middle Aged</topic><topic>Miscellaneous</topic><topic>Nucleotides</topic><topic>Papillomaviridae - genetics</topic><topic>Papillomavirus infections</topic><topic>Papillomavirus Infections - epidemiology</topic><topic>Papillomavirus Infections - virology</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>Sequence Analysis, DNA</topic><topic>Sequencing</topic><topic>Tumor Virus Infections - epidemiology</topic><topic>Tumor Virus Infections - virology</topic><topic>Tumors</topic><topic>Uterine Cervical Neoplasms - epidemiology</topic><topic>Uterine Cervical Neoplasms - virology</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Asato, Tsuyoshi</creatorcontrib><creatorcontrib>Maehama, Toshiyuki</creatorcontrib><creatorcontrib>Nagai, Yutaka</creatorcontrib><creatorcontrib>Kanazawa, Koji</creatorcontrib><creatorcontrib>Uezato, Hiroshi</creatorcontrib><creatorcontrib>Kariya, Ken-ichi</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Premium</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of infectious diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Asato, Tsuyoshi</au><au>Maehama, Toshiyuki</au><au>Nagai, Yutaka</au><au>Kanazawa, Koji</au><au>Uezato, Hiroshi</au><au>Kariya, Ken-ichi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Large Case-Control Study of Cervical Cancer Risk Associated with Human Papillomavirus Infection in Japan, by Nucleotide Sequencing-Based Genotyping</atitle><jtitle>The Journal of infectious diseases</jtitle><stitle>J Infect Dis</stitle><addtitle>J Infect Dis</addtitle><date>2004-05-15</date><risdate>2004</risdate><volume>189</volume><issue>10</issue><spage>1829</spage><epage>1832</epage><pages>1829-1832</pages><issn>0022-1899</issn><eissn>1537-6613</eissn><coden>JIDIAQ</coden><abstract>Using nucleotide sequencing-based genotyping, we conducted a case-control study to examine cervical cancer risk associated with human papillomavirus (HPV) infection in a Japanese population. A consensus primer pair was used to amplify DNA from the L1 region of HPV by polymerase chain reaction (PCR). By PCR, 311 of 356 patients with cervical cancer and 333 of 3249 control individuals were positive for HPV. By the direct sequencing of PCR products, nucleotide sequences of 30 genotypes were obtained. A high incidence of type 52 and a low incidence of type 16 were characteristic of the control group. Odds ratios were estimated for 18 genotypes. Types 71, 90, and 91, previously uncharacterized, were classified as low-risk genotypes, which is consistent with predictions made on the basis of phylogeny. The present study is the first large case-control study of its kind to use nucleotide sequencing-based genotyping.</abstract><cop>Chicago, IL</cop><pub>The University of Chicago Press</pub><pmid>15122519</pmid><doi>10.1086/382896</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Adult Aged Aged, 80 and over Average age Biological and medical sciences Carcinoma, Squamous Cell - epidemiology Carcinoma, Squamous Cell - virology Case control studies Cervical cancer DNA DNA, Viral - chemistry DNA, Viral - genetics Female Fundamental and applied biological sciences. Psychology Genotype Genotypes Human papillomavirus Humans Infectious diseases Japan - epidemiology Medical sciences Microbiology Middle Aged Miscellaneous Nucleotides Papillomaviridae - genetics Papillomavirus infections Papillomavirus Infections - epidemiology Papillomavirus Infections - virology Phylogeny Polymerase Chain Reaction Sequence Analysis, DNA Sequencing Tumor Virus Infections - epidemiology Tumor Virus Infections - virology Tumors Uterine Cervical Neoplasms - epidemiology Uterine Cervical Neoplasms - virology Virology Viruses |
| title | A Large Case-Control Study of Cervical Cancer Risk Associated with Human Papillomavirus Infection in Japan, by Nucleotide Sequencing-Based Genotyping |
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