new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers
A linkage map of cacao based on codominant markers has been constructed by integrating 201 new simple sequence repeats (SSR) developed in this study with a number of isoenzymes, restriction fragment length polymorphisms (RFLP), microsatellite markers and resistance and defence gene analogs (Rgenes-R...
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| Veröffentlicht in: | Theoretical and applied genetics 2004-04, Vol.108 (6), p.1151-1161 |
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| creator | Pugh, T Fouet, O Risterucci, A.M Brottier, P Abouladze, M Deletrez, C Courtois, B Clement, D Larmande, P N'Goran, J.A.K |
| description | A linkage map of cacao based on codominant markers has been constructed by integrating 201 new simple sequence repeats (SSR) developed in this study with a number of isoenzymes, restriction fragment length polymorphisms (RFLP), microsatellite markers and resistance and defence gene analogs (Rgenes-RFLP) previously mapped in cacao. A genomic library enriched for (GA)n and (CA)n was constructed, and 201 new microsatellite loci were mapped on 135 individuals from the same mapping population used to establish the first reference maps. This progeny resulted from a cross between two heterozygous cacao clones: an Upper-Amazon Forastero (UPA 402) and a Trinitario (UF 676). The new map contains 465 markers (268 SSRs, 176 RFLPs, five isoenzymes and 16 Rgenes-RFLP) arranged in ten linkage groups corresponding to the haploid chromosome number of cacao. Its length is 782.8 cM, with an average interval distance between markers of 1.7 cM. The new microsatellite markers were distributed throughout all linkage groups of the map, but their distribution was not random. The length of the map established with only SSRs was 769.6 cM, representing 94.8% of the total map. The current level of genome coverage is approximately one microsatellite every 3 cM. This new reference map provides a set of useful markers that is transferable across different mapping populations and will allow the identification and comparison of the most important regions involved in the variation of the traits of interest and the development of marker-assisted selection strategies. |
| doi_str_mv | 10.1007/s00122-003-1533-4 |
| format | Article |
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A genomic library enriched for (GA)n and (CA)n was constructed, and 201 new microsatellite loci were mapped on 135 individuals from the same mapping population used to establish the first reference maps. This progeny resulted from a cross between two heterozygous cacao clones: an Upper-Amazon Forastero (UPA 402) and a Trinitario (UF 676). The new map contains 465 markers (268 SSRs, 176 RFLPs, five isoenzymes and 16 Rgenes-RFLP) arranged in ten linkage groups corresponding to the haploid chromosome number of cacao. Its length is 782.8 cM, with an average interval distance between markers of 1.7 cM. The new microsatellite markers were distributed throughout all linkage groups of the map, but their distribution was not random. The length of the map established with only SSRs was 769.6 cM, representing 94.8% of the total map. The current level of genome coverage is approximately one microsatellite every 3 cM. This new reference map provides a set of useful markers that is transferable across different mapping populations and will allow the identification and comparison of the most important regions involved in the variation of the traits of interest and the development of marker-assisted selection strategies.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-003-1533-4</identifier><identifier>PMID: 14760486</identifier><identifier>CODEN: THAGA6</identifier><language>eng</language><publisher>Heidelberg: Springer</publisher><subject>Biological and medical sciences ; Cacao - genetics ; Chromosome Mapping ; Classical genetics, quantitative genetics, hybrids ; codominance ; Crosses, Genetic ; defense gene analogs ; disease resistance ; DNA Primers ; Fundamental and applied biological sciences. Psychology ; Genetic markers ; Genetics ; Genetics of eukaryotes. Biological and molecular evolution ; Genomic Library ; Genomics ; isozymes ; loci ; Methods, theories and miscellaneous ; microsatellite repeats ; Microsatellite Repeats - genetics ; molecular sequence data ; nucleotide sequences ; Polymorphism, Genetic ; Polymorphism, Restriction Fragment Length ; Pteridophyta, spermatophyta ; resistance gene analogs ; restriction fragment length polymorphism ; Theobroma cacao ; Vegetals</subject><ispartof>Theoretical and applied genetics, 2004-04, Vol.108 (6), p.1151-1161</ispartof><rights>2004 INIST-CNRS</rights><rights>Springer-Verlag 2004</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c411t-83541e66b14d0c997f17ed54a853499c01166e3172f520ceaba43669cba5db9e3</citedby><cites>FETCH-LOGICAL-c411t-83541e66b14d0c997f17ed54a853499c01166e3172f520ceaba43669cba5db9e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15667081$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14760486$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pugh, T</creatorcontrib><creatorcontrib>Fouet, O</creatorcontrib><creatorcontrib>Risterucci, A.M</creatorcontrib><creatorcontrib>Brottier, P</creatorcontrib><creatorcontrib>Abouladze, M</creatorcontrib><creatorcontrib>Deletrez, C</creatorcontrib><creatorcontrib>Courtois, B</creatorcontrib><creatorcontrib>Clement, D</creatorcontrib><creatorcontrib>Larmande, P</creatorcontrib><creatorcontrib>N'Goran, J.A.K</creatorcontrib><title>new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><description>A linkage map of cacao based on codominant markers has been constructed by integrating 201 new simple sequence repeats (SSR) developed in this study with a number of isoenzymes, restriction fragment length polymorphisms (RFLP), microsatellite markers and resistance and defence gene analogs (Rgenes-RFLP) previously mapped in cacao. A genomic library enriched for (GA)n and (CA)n was constructed, and 201 new microsatellite loci were mapped on 135 individuals from the same mapping population used to establish the first reference maps. This progeny resulted from a cross between two heterozygous cacao clones: an Upper-Amazon Forastero (UPA 402) and a Trinitario (UF 676). The new map contains 465 markers (268 SSRs, 176 RFLPs, five isoenzymes and 16 Rgenes-RFLP) arranged in ten linkage groups corresponding to the haploid chromosome number of cacao. Its length is 782.8 cM, with an average interval distance between markers of 1.7 cM. The new microsatellite markers were distributed throughout all linkage groups of the map, but their distribution was not random. The length of the map established with only SSRs was 769.6 cM, representing 94.8% of the total map. The current level of genome coverage is approximately one microsatellite every 3 cM. This new reference map provides a set of useful markers that is transferable across different mapping populations and will allow the identification and comparison of the most important regions involved in the variation of the traits of interest and the development of marker-assisted selection strategies.</description><subject>Biological and medical sciences</subject><subject>Cacao - genetics</subject><subject>Chromosome Mapping</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>codominance</subject><subject>Crosses, Genetic</subject><subject>defense gene analogs</subject><subject>disease resistance</subject><subject>DNA Primers</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic markers</subject><subject>Genetics</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genomic Library</subject><subject>Genomics</subject><subject>isozymes</subject><subject>loci</subject><subject>Methods, theories and miscellaneous</subject><subject>microsatellite repeats</subject><subject>Microsatellite Repeats - genetics</subject><subject>molecular sequence data</subject><subject>nucleotide sequences</subject><subject>Polymorphism, Genetic</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Pteridophyta, spermatophyta</subject><subject>resistance gene analogs</subject><subject>restriction fragment length polymorphism</subject><subject>Theobroma cacao</subject><subject>Vegetals</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkU2LFDEQhoMo7jj6A7xoEPTWWpXv9iaLX7DgQfcc0un00LvdSZv0KP57087IghdPBcXzvknxEPIU4TUC6DcFABlrAHiDkvNG3CM7FJw1jAl2n-wABDRSS3ZBHpVyAwBMAn9ILlBoBcKoHVli-Em98y7RaYy37hDo7BbauRJ6miL1qU_zGF1c6z7fhlze0j78CFNa5lCXLvZ0jGs4ZLeOlU8DZYB0a51Hn1Nxa5imcQ1_44_Jg8FNJTw5zz25_vD-2-Wn5urLx8-X764aLxDXxnApMCjVoejBt60eUIdeCmckF23rAVGpwFGzQTLwwXVOcKVa3znZd23ge_Lq1Lvk9P0Yymrnsfj6FxdDOhar0SDnxvwXRN1yYTSr4It_wJt0zLEeYQ0aI9utcU_wBG23lxwGu-Sxnv7LIthNmj1Js1Wa3aRZUTPPzsXHbg79XeJsqQIvz4Ar3k1DdtGP5Y6TSmn48_jzEze4ZN0hV-b6a9XBAVpep-S_ARC8p10</recordid><startdate>20040401</startdate><enddate>20040401</enddate><creator>Pugh, T</creator><creator>Fouet, O</creator><creator>Risterucci, A.M</creator><creator>Brottier, P</creator><creator>Abouladze, M</creator><creator>Deletrez, C</creator><creator>Courtois, B</creator><creator>Clement, D</creator><creator>Larmande, P</creator><creator>N'Goran, J.A.K</creator><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20040401</creationdate><title>new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers</title><author>Pugh, T ; Fouet, O ; Risterucci, A.M ; Brottier, P ; Abouladze, M ; Deletrez, C ; Courtois, B ; Clement, D ; Larmande, P ; N'Goran, J.A.K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c411t-83541e66b14d0c997f17ed54a853499c01166e3172f520ceaba43669cba5db9e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Biological and medical sciences</topic><topic>Cacao - genetics</topic><topic>Chromosome Mapping</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>codominance</topic><topic>Crosses, Genetic</topic><topic>defense gene analogs</topic><topic>disease resistance</topic><topic>DNA Primers</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetic markers</topic><topic>Genetics</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Genomic Library</topic><topic>Genomics</topic><topic>isozymes</topic><topic>loci</topic><topic>Methods, theories and miscellaneous</topic><topic>microsatellite repeats</topic><topic>Microsatellite Repeats - genetics</topic><topic>molecular sequence data</topic><topic>nucleotide sequences</topic><topic>Polymorphism, Genetic</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Pteridophyta, spermatophyta</topic><topic>resistance gene analogs</topic><topic>restriction fragment length polymorphism</topic><topic>Theobroma cacao</topic><topic>Vegetals</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pugh, T</creatorcontrib><creatorcontrib>Fouet, O</creatorcontrib><creatorcontrib>Risterucci, A.M</creatorcontrib><creatorcontrib>Brottier, P</creatorcontrib><creatorcontrib>Abouladze, M</creatorcontrib><creatorcontrib>Deletrez, C</creatorcontrib><creatorcontrib>Courtois, B</creatorcontrib><creatorcontrib>Clement, D</creatorcontrib><creatorcontrib>Larmande, P</creatorcontrib><creatorcontrib>N'Goran, J.A.K</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pugh, T</au><au>Fouet, O</au><au>Risterucci, A.M</au><au>Brottier, P</au><au>Abouladze, M</au><au>Deletrez, C</au><au>Courtois, B</au><au>Clement, D</au><au>Larmande, P</au><au>N'Goran, J.A.K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers</atitle><jtitle>Theoretical and applied genetics</jtitle><addtitle>Theor Appl Genet</addtitle><date>2004-04-01</date><risdate>2004</risdate><volume>108</volume><issue>6</issue><spage>1151</spage><epage>1161</epage><pages>1151-1161</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><coden>THAGA6</coden><abstract>A linkage map of cacao based on codominant markers has been constructed by integrating 201 new simple sequence repeats (SSR) developed in this study with a number of isoenzymes, restriction fragment length polymorphisms (RFLP), microsatellite markers and resistance and defence gene analogs (Rgenes-RFLP) previously mapped in cacao. A genomic library enriched for (GA)n and (CA)n was constructed, and 201 new microsatellite loci were mapped on 135 individuals from the same mapping population used to establish the first reference maps. This progeny resulted from a cross between two heterozygous cacao clones: an Upper-Amazon Forastero (UPA 402) and a Trinitario (UF 676). The new map contains 465 markers (268 SSRs, 176 RFLPs, five isoenzymes and 16 Rgenes-RFLP) arranged in ten linkage groups corresponding to the haploid chromosome number of cacao. Its length is 782.8 cM, with an average interval distance between markers of 1.7 cM. The new microsatellite markers were distributed throughout all linkage groups of the map, but their distribution was not random. The length of the map established with only SSRs was 769.6 cM, representing 94.8% of the total map. The current level of genome coverage is approximately one microsatellite every 3 cM. 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| ispartof | Theoretical and applied genetics, 2004-04, Vol.108 (6), p.1151-1161 |
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| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Biological and medical sciences Cacao - genetics Chromosome Mapping Classical genetics, quantitative genetics, hybrids codominance Crosses, Genetic defense gene analogs disease resistance DNA Primers Fundamental and applied biological sciences. Psychology Genetic markers Genetics Genetics of eukaryotes. Biological and molecular evolution Genomic Library Genomics isozymes loci Methods, theories and miscellaneous microsatellite repeats Microsatellite Repeats - genetics molecular sequence data nucleotide sequences Polymorphism, Genetic Polymorphism, Restriction Fragment Length Pteridophyta, spermatophyta resistance gene analogs restriction fragment length polymorphism Theobroma cacao Vegetals |
| title | new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers |
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