The genome structure of kyuri green mottle mosaic tobamovirus and its comparison with that of cucumber green mottle mosaic tobamovirus
The genome of the Y strain of kyuri green mottle mosaic virus (KGMMV-Y) has been completely sequenced. Its genomic structure and sequence show it to be a typical tobamovirus, that is closest to, but distinct from, that of cucumber green mottle mosaic tobamovirus (CGMMV). The genomic sequence of KGMM...
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| Veröffentlicht in: | Archives of virology 2000-01, Vol.145 (6), p.1067-1079 |
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| description | The genome of the Y strain of kyuri green mottle mosaic virus (KGMMV-Y) has been completely sequenced. Its genomic structure and sequence show it to be a typical tobamovirus, that is closest to, but distinct from, that of cucumber green mottle mosaic tobamovirus (CGMMV). The genomic sequence of KGMMV-Y was compared in detail with that of the SH strain of CGMMV. The sequences of their 5'- and 3'-untranslated regions were 74% and 63% identical. The amino acid sequences of the shorter and longer (read through) RNA replicase components, movement protein (MP) and coat protein (CP) were 58, 58. 60 and 46% identical, respectively. The KGMMV-Y genome sequence was also compared partly to that of another strain of KGMMV, KGMMV-C. The CP sequences of KGMMV-Y and KGMMV-C differed by 20 amino acid residues, suggesting that their relationship is more distant than the relationship between CGMMV-SH and CGMMV-W whose CP sequences are identical. The MPs of KGMMV-Y and KGMMV-C, however, differ only by one amino acid residue, although three amino acid substitutions are present in the MPs between CGMMV-SH and CGMMV-W. Two long stretches, one in the RNA replicase and the other in the MP, were highly conserved in KGMMV and CGMMV. |
| doi_str_mv | 10.1007/s007050070110 |
| format | Article |
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Its genomic structure and sequence show it to be a typical tobamovirus, that is closest to, but distinct from, that of cucumber green mottle mosaic tobamovirus (CGMMV). The genomic sequence of KGMMV-Y was compared in detail with that of the SH strain of CGMMV. The sequences of their 5'- and 3'-untranslated regions were 74% and 63% identical. The amino acid sequences of the shorter and longer (read through) RNA replicase components, movement protein (MP) and coat protein (CP) were 58, 58. 60 and 46% identical, respectively. The KGMMV-Y genome sequence was also compared partly to that of another strain of KGMMV, KGMMV-C. The CP sequences of KGMMV-Y and KGMMV-C differed by 20 amino acid residues, suggesting that their relationship is more distant than the relationship between CGMMV-SH and CGMMV-W whose CP sequences are identical. The MPs of KGMMV-Y and KGMMV-C, however, differ only by one amino acid residue, although three amino acid substitutions are present in the MPs between CGMMV-SH and CGMMV-W. Two long stretches, one in the RNA replicase and the other in the MP, were highly conserved in KGMMV and CGMMV.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s007050070110</identifier><identifier>PMID: 10948983</identifier><language>eng</language><publisher>Wien: Springer</publisher><subject>ACP protein ; Amino Acid Sequence ; AMP protein ; Biological and medical sciences ; Capsid - chemistry ; Capsid - genetics ; Cucumber green mottle mosaic virus ; Cucumis sativus - virology ; Fundamental and applied biological sciences. Psychology ; Genetics ; Genome, Viral ; Kyuri green mottle mosaic virus ; Microbiology ; Molecular Sequence Data ; Phylogeny ; Phytopathology. Animal pests. Plant and forest protection ; Plant Diseases - virology ; Plant Viral Movement Proteins ; Plant viruses and viroids ; RNA replicase ; RNA Replicase - chemistry ; RNA Replicase - genetics ; Sequence Alignment ; Sequence Analysis, DNA ; Systematics. Structure, properties and multiplication. Genetics ; Tobamovirus ; Tobamovirus - classification ; Tobamovirus - genetics ; Viral Proteins - chemistry ; Viral Proteins - genetics ; Virology</subject><ispartof>Archives of virology, 2000-01, Vol.145 (6), p.1067-1079</ispartof><rights>2001 INIST-CNRS</rights><rights>Springer-Verlag/Wien 2000</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c376t-8451d18e22e01f50b512fe2b9dc02bba52bd523017275d39527a471a5a0d06193</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27915,27916</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=836965$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10948983$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>TAN, S.-H</creatorcontrib><creatorcontrib>NISHIGUCHI, M</creatorcontrib><creatorcontrib>MURATA, M</creatorcontrib><creatorcontrib>MOTOYOSHI, F</creatorcontrib><title>The genome structure of kyuri green mottle mosaic tobamovirus and its comparison with that of cucumber green mottle mosaic tobamovirus</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><description>The genome of the Y strain of kyuri green mottle mosaic virus (KGMMV-Y) has been completely sequenced. Its genomic structure and sequence show it to be a typical tobamovirus, that is closest to, but distinct from, that of cucumber green mottle mosaic tobamovirus (CGMMV). The genomic sequence of KGMMV-Y was compared in detail with that of the SH strain of CGMMV. The sequences of their 5'- and 3'-untranslated regions were 74% and 63% identical. The amino acid sequences of the shorter and longer (read through) RNA replicase components, movement protein (MP) and coat protein (CP) were 58, 58. 60 and 46% identical, respectively. The KGMMV-Y genome sequence was also compared partly to that of another strain of KGMMV, KGMMV-C. The CP sequences of KGMMV-Y and KGMMV-C differed by 20 amino acid residues, suggesting that their relationship is more distant than the relationship between CGMMV-SH and CGMMV-W whose CP sequences are identical. The MPs of KGMMV-Y and KGMMV-C, however, differ only by one amino acid residue, although three amino acid substitutions are present in the MPs between CGMMV-SH and CGMMV-W. Two long stretches, one in the RNA replicase and the other in the MP, were highly conserved in KGMMV and CGMMV.</description><subject>ACP protein</subject><subject>Amino Acid Sequence</subject><subject>AMP protein</subject><subject>Biological and medical sciences</subject><subject>Capsid - chemistry</subject><subject>Capsid - genetics</subject><subject>Cucumber green mottle mosaic virus</subject><subject>Cucumis sativus - virology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetics</subject><subject>Genome, Viral</subject><subject>Kyuri green mottle mosaic virus</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Phytopathology. Animal pests. Plant and forest protection</subject><subject>Plant Diseases - virology</subject><subject>Plant Viral Movement Proteins</subject><subject>Plant viruses and viroids</subject><subject>RNA replicase</subject><subject>RNA Replicase - chemistry</subject><subject>RNA Replicase - genetics</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics. Structure, properties and multiplication. Genetics</subject><subject>Tobamovirus</subject><subject>Tobamovirus - classification</subject><subject>Tobamovirus - genetics</subject><subject>Viral Proteins - chemistry</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqF0U1rFTEUBuAgir1Wl24lILgbPScfk8xSil9QcFPXQyZzpjd1ZnLNh9I_4O92LrdIddNFzoHw8IbwMvYS4S0CmHd5G6CPAxEesR0qKRprOvuY7UCCamwL9ow9y_kGYLuQ-ik7Q-iU7azcsd9Xe-LXtMaFeC6p-lIT8Tjx77c1BX6diFa-xFJm2lZ2wfMSB7fEnyHVzN068lAy93E5uBRyXPmvUPa87F05pvjq6zJQeijoOXsyuTnTi7t9zr59_HB18bm5_Prpy8X7y8ZL05bGKo0jWhKCACcNg0YxkRi60YMYBqfFMGohAY0wepSdFsYpg047GKHFTp6zN6fcQ4o_KuXSLyF7mme3Uqy5N2hUBxofhGi0kq08wtf_wZtY07p9okcQyii1nU01J-VTzDnR1B9SWFy63VB_7LH_p8fNv7pLrcNC4z19Ku7esy57N0_JrT7kv87Ktmu1_APadqVO</recordid><startdate>20000101</startdate><enddate>20000101</enddate><creator>TAN, S.-H</creator><creator>NISHIGUCHI, M</creator><creator>MURATA, M</creator><creator>MOTOYOSHI, F</creator><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20000101</creationdate><title>The genome structure of kyuri green mottle mosaic tobamovirus and its comparison with that of cucumber green mottle mosaic tobamovirus</title><author>TAN, S.-H ; NISHIGUCHI, M ; MURATA, M ; MOTOYOSHI, F</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c376t-8451d18e22e01f50b512fe2b9dc02bba52bd523017275d39527a471a5a0d06193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>ACP protein</topic><topic>Amino Acid Sequence</topic><topic>AMP protein</topic><topic>Biological and medical sciences</topic><topic>Capsid - chemistry</topic><topic>Capsid - genetics</topic><topic>Cucumber green mottle mosaic virus</topic><topic>Cucumis sativus - virology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetics</topic><topic>Genome, Viral</topic><topic>Kyuri green mottle mosaic virus</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Phytopathology. Animal pests. Plant and forest protection</topic><topic>Plant Diseases - virology</topic><topic>Plant Viral Movement Proteins</topic><topic>Plant viruses and viroids</topic><topic>RNA replicase</topic><topic>RNA Replicase - chemistry</topic><topic>RNA Replicase - genetics</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics. Structure, properties and multiplication. Genetics</topic><topic>Tobamovirus</topic><topic>Tobamovirus - classification</topic><topic>Tobamovirus - genetics</topic><topic>Viral Proteins - chemistry</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>TAN, S.-H</creatorcontrib><creatorcontrib>NISHIGUCHI, M</creatorcontrib><creatorcontrib>MURATA, M</creatorcontrib><creatorcontrib>MOTOYOSHI, F</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biological Sciences</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>TAN, S.-H</au><au>NISHIGUCHI, M</au><au>MURATA, M</au><au>MOTOYOSHI, F</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The genome structure of kyuri green mottle mosaic tobamovirus and its comparison with that of cucumber green mottle mosaic tobamovirus</atitle><jtitle>Archives of virology</jtitle><addtitle>Arch Virol</addtitle><date>2000-01-01</date><risdate>2000</risdate><volume>145</volume><issue>6</issue><spage>1067</spage><epage>1079</epage><pages>1067-1079</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The genome of the Y strain of kyuri green mottle mosaic virus (KGMMV-Y) has been completely sequenced. Its genomic structure and sequence show it to be a typical tobamovirus, that is closest to, but distinct from, that of cucumber green mottle mosaic tobamovirus (CGMMV). The genomic sequence of KGMMV-Y was compared in detail with that of the SH strain of CGMMV. The sequences of their 5'- and 3'-untranslated regions were 74% and 63% identical. The amino acid sequences of the shorter and longer (read through) RNA replicase components, movement protein (MP) and coat protein (CP) were 58, 58. 60 and 46% identical, respectively. The KGMMV-Y genome sequence was also compared partly to that of another strain of KGMMV, KGMMV-C. The CP sequences of KGMMV-Y and KGMMV-C differed by 20 amino acid residues, suggesting that their relationship is more distant than the relationship between CGMMV-SH and CGMMV-W whose CP sequences are identical. The MPs of KGMMV-Y and KGMMV-C, however, differ only by one amino acid residue, although three amino acid substitutions are present in the MPs between CGMMV-SH and CGMMV-W. Two long stretches, one in the RNA replicase and the other in the MP, were highly conserved in KGMMV and CGMMV.</abstract><cop>Wien</cop><cop>New York, NY</cop><pub>Springer</pub><pmid>10948983</pmid><doi>10.1007/s007050070110</doi><tpages>13</tpages></addata></record> |
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| subjects | ACP protein Amino Acid Sequence AMP protein Biological and medical sciences Capsid - chemistry Capsid - genetics Cucumber green mottle mosaic virus Cucumis sativus - virology Fundamental and applied biological sciences. Psychology Genetics Genome, Viral Kyuri green mottle mosaic virus Microbiology Molecular Sequence Data Phylogeny Phytopathology. Animal pests. Plant and forest protection Plant Diseases - virology Plant Viral Movement Proteins Plant viruses and viroids RNA replicase RNA Replicase - chemistry RNA Replicase - genetics Sequence Alignment Sequence Analysis, DNA Systematics. Structure, properties and multiplication. Genetics Tobamovirus Tobamovirus - classification Tobamovirus - genetics Viral Proteins - chemistry Viral Proteins - genetics Virology |
| title | The genome structure of kyuri green mottle mosaic tobamovirus and its comparison with that of cucumber green mottle mosaic tobamovirus |
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