Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes)
Using the primers described for humans, sequences for 11 Y‐specific microsatellites (DYS434, DYS435, DYS436, DYS437, DYS438, DYS439, GATA A10, A7.1, A7.2, C4, and H4 [Gusmão et al., in press]), previously described in 10 male chimpanzees (Pan troglodytes), were confirmed in nine additional male chim...
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| Veröffentlicht in: | American journal of primatology 2002-05, Vol.57 (1), p.21-29 |
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| creator | Gusmão, L. González-Neira, A. Alves, C. Sánchez-Diz, P. Dauber, E.M. Amorim, A. Carracedo, A. |
| description | Using the primers described for humans, sequences for 11 Y‐specific microsatellites (DYS434, DYS435, DYS436, DYS437, DYS438, DYS439, GATA A10, A7.1, A7.2, C4, and H4 [Gusmão et al., in press]), previously described in 10 male chimpanzees (Pan troglodytes), were confirmed in nine additional male chimpanzees. Sequences for nine additional microsatellites (DYS19, DYS385I and II, DYS389I and II, DYS390, DYS391, DYS392, and DYS393) were determined in all 19 male chimpanzees; homology to human Y‐Short Tandem Repeat (STRs) was confirmed by sequencing. Good amplification results were not obtained for DYS19 and DYS385I/II. Two amplicons were obtained for DYS389I/II, but in contrast to humans, the larger fragment was not Y‐specific. Moreover, no polymorphism was observed for DYS434, DYS435, or GATA A10. Consequently, these eight STRs were eliminated from further analyses, and haplotype and allele frequencies were estimated for the remaining 12 STRs. A high haplotype diversity value was found (1.000 ± 0.017), demonstrating the usefulness and informative power of these Y‐STRs for future studies on chimpanzee population genetics.Am. J. Primatol. 57:21–29, 2002. © 2002 Wiley‐Liss, Inc. |
| doi_str_mv | 10.1002/ajp.1084 |
| format | Article |
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Sequences for nine additional microsatellites (DYS19, DYS385I and II, DYS389I and II, DYS390, DYS391, DYS392, and DYS393) were determined in all 19 male chimpanzees; homology to human Y‐Short Tandem Repeat (STRs) was confirmed by sequencing. Good amplification results were not obtained for DYS19 and DYS385I/II. Two amplicons were obtained for DYS389I/II, but in contrast to humans, the larger fragment was not Y‐specific. Moreover, no polymorphism was observed for DYS434, DYS435, or GATA A10. Consequently, these eight STRs were eliminated from further analyses, and haplotype and allele frequencies were estimated for the remaining 12 STRs. A high haplotype diversity value was found (1.000 ± 0.017), demonstrating the usefulness and informative power of these Y‐STRs for future studies on chimpanzee population genetics.Am. J. Primatol. 57:21–29, 2002. © 2002 Wiley‐Liss, Inc.</description><identifier>ISSN: 0275-2565</identifier><identifier>EISSN: 1098-2345</identifier><identifier>DOI: 10.1002/ajp.1084</identifier><identifier>PMID: 11977123</identifier><identifier>CODEN: AJPTDU</identifier><language>eng</language><publisher>New York: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>Amino Acid Sequence ; Animals ; Base Sequence ; Biological and medical sciences ; Chimpanzees ; Evolution, Molecular ; Female ; Fundamental and applied biological sciences. Psychology ; gene diversity ; Gene Frequency ; Genes ; Genetics ; haplotype diversity ; Haplotypes - genetics ; Humans ; Male ; Mammalia ; Microsatellite Repeats - genetics ; Pan troglodytes - genetics ; Polymerase Chain Reaction ; Polymorphism, Genetic - genetics ; Primates ; Primatology ; Sequence Homology, Amino Acid ; Short tandem repeat ; Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution ; Y Chromosome - genetics ; Y-STR</subject><ispartof>American journal of primatology, 2002-05, Vol.57 (1), p.21-29</ispartof><rights>Copyright © 2002 Wiley‐Liss, Inc.</rights><rights>2002 INIST-CNRS</rights><rights>Copyright 2002 Wiley-Liss, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5134-88b7c8a1fcb23148aefb73446fe818a55cd193067bd53dd14b721064be09bbb3</citedby><cites>FETCH-LOGICAL-c5134-88b7c8a1fcb23148aefb73446fe818a55cd193067bd53dd14b721064be09bbb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fajp.1084$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fajp.1084$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=13653130$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11977123$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gusmão, L.</creatorcontrib><creatorcontrib>González-Neira, A.</creatorcontrib><creatorcontrib>Alves, C.</creatorcontrib><creatorcontrib>Sánchez-Diz, P.</creatorcontrib><creatorcontrib>Dauber, E.M.</creatorcontrib><creatorcontrib>Amorim, A.</creatorcontrib><creatorcontrib>Carracedo, A.</creatorcontrib><title>Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes)</title><title>American journal of primatology</title><addtitle>Am. J. Primatol</addtitle><description>Using the primers described for humans, sequences for 11 Y‐specific microsatellites (DYS434, DYS435, DYS436, DYS437, DYS438, DYS439, GATA A10, A7.1, A7.2, C4, and H4 [Gusmão et al., in press]), previously described in 10 male chimpanzees (Pan troglodytes), were confirmed in nine additional male chimpanzees. Sequences for nine additional microsatellites (DYS19, DYS385I and II, DYS389I and II, DYS390, DYS391, DYS392, and DYS393) were determined in all 19 male chimpanzees; homology to human Y‐Short Tandem Repeat (STRs) was confirmed by sequencing. Good amplification results were not obtained for DYS19 and DYS385I/II. Two amplicons were obtained for DYS389I/II, but in contrast to humans, the larger fragment was not Y‐specific. Moreover, no polymorphism was observed for DYS434, DYS435, or GATA A10. Consequently, these eight STRs were eliminated from further analyses, and haplotype and allele frequencies were estimated for the remaining 12 STRs. A high haplotype diversity value was found (1.000 ± 0.017), demonstrating the usefulness and informative power of these Y‐STRs for future studies on chimpanzee population genetics.Am. J. Primatol. 57:21–29, 2002. © 2002 Wiley‐Liss, Inc.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Chimpanzees</subject><subject>Evolution, Molecular</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gene diversity</subject><subject>Gene Frequency</subject><subject>Genes</subject><subject>Genetics</subject><subject>haplotype diversity</subject><subject>Haplotypes - genetics</subject><subject>Humans</subject><subject>Male</subject><subject>Mammalia</subject><subject>Microsatellite Repeats - genetics</subject><subject>Pan troglodytes - genetics</subject><subject>Polymerase Chain Reaction</subject><subject>Polymorphism, Genetic - genetics</subject><subject>Primates</subject><subject>Primatology</subject><subject>Sequence Homology, Amino Acid</subject><subject>Short tandem repeat</subject><subject>Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</subject><subject>Y Chromosome - genetics</subject><subject>Y-STR</subject><issn>0275-2565</issn><issn>1098-2345</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0c1u1DAUBWALgei0IPEEKBtQWQR8_RM7y1K1A1UFFYyEYGPZzg24ZJLUzgDD0-PRRO0KdWXL-nyvdA4hz4C-BkrZG3s95osWD8gCaK1LxoV8SBaUKVkyWckDcpjSNaUAopKPyQFArRQwviBnS-xxCr5owi-MKUzbYmiLr2Ua0Yc2v39efUpF6Av_I6xH2_9FTMXxle2LKQ7fu6HZTphePSGPWtslfDqfR2R1frY6fVdefly-Pz25LL0ELkqtnfLaQusd4yC0xdYpLkTVogZtpfQN1JxWyjWSNw0IpxjQSjiktXOOH5GX-7FjHG42mCazDslj19keh00yClROgbF7Ia9zTFKLeyFoIUDKHTzeQx-HlCK2ZoxhbePWADW7DkzuwOw6yPT5PHPj1tjcwTn0DF7MwCZvuzba3od053glOXCaXbl3v0OH2_8uNCcXV_Pi2Yc04Z9bb-NPUymupPnyYWnenrNvSuTvkv8D0rKpuw</recordid><startdate>200205</startdate><enddate>200205</enddate><creator>Gusmão, L.</creator><creator>González-Neira, A.</creator><creator>Alves, C.</creator><creator>Sánchez-Diz, P.</creator><creator>Dauber, E.M.</creator><creator>Amorim, A.</creator><creator>Carracedo, A.</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><general>Wiley-Liss</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>8BJ</scope><scope>FQK</scope><scope>JBE</scope><scope>7X8</scope></search><sort><creationdate>200205</creationdate><title>Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes)</title><author>Gusmão, L. ; González-Neira, A. ; Alves, C. ; Sánchez-Diz, P. ; Dauber, E.M. ; Amorim, A. ; Carracedo, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5134-88b7c8a1fcb23148aefb73446fe818a55cd193067bd53dd14b721064be09bbb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Chimpanzees</topic><topic>Evolution, Molecular</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gene diversity</topic><topic>Gene Frequency</topic><topic>Genes</topic><topic>Genetics</topic><topic>haplotype diversity</topic><topic>Haplotypes - genetics</topic><topic>Humans</topic><topic>Male</topic><topic>Mammalia</topic><topic>Microsatellite Repeats - genetics</topic><topic>Pan troglodytes - genetics</topic><topic>Polymerase Chain Reaction</topic><topic>Polymorphism, Genetic - genetics</topic><topic>Primates</topic><topic>Primatology</topic><topic>Sequence Homology, Amino Acid</topic><topic>Short tandem repeat</topic><topic>Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</topic><topic>Y Chromosome - genetics</topic><topic>Y-STR</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gusmão, L.</creatorcontrib><creatorcontrib>González-Neira, A.</creatorcontrib><creatorcontrib>Alves, C.</creatorcontrib><creatorcontrib>Sánchez-Diz, P.</creatorcontrib><creatorcontrib>Dauber, E.M.</creatorcontrib><creatorcontrib>Amorim, A.</creatorcontrib><creatorcontrib>Carracedo, A.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>International Bibliography of the Social Sciences (IBSS)</collection><collection>International Bibliography of the Social Sciences</collection><collection>International Bibliography of the Social Sciences</collection><collection>MEDLINE - Academic</collection><jtitle>American journal of primatology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gusmão, L.</au><au>González-Neira, A.</au><au>Alves, C.</au><au>Sánchez-Diz, P.</au><au>Dauber, E.M.</au><au>Amorim, A.</au><au>Carracedo, A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes)</atitle><jtitle>American journal of primatology</jtitle><addtitle>Am. J. Primatol</addtitle><date>2002-05</date><risdate>2002</risdate><volume>57</volume><issue>1</issue><spage>21</spage><epage>29</epage><pages>21-29</pages><issn>0275-2565</issn><eissn>1098-2345</eissn><coden>AJPTDU</coden><abstract>Using the primers described for humans, sequences for 11 Y‐specific microsatellites (DYS434, DYS435, DYS436, DYS437, DYS438, DYS439, GATA A10, A7.1, A7.2, C4, and H4 [Gusmão et al., in press]), previously described in 10 male chimpanzees (Pan troglodytes), were confirmed in nine additional male chimpanzees. Sequences for nine additional microsatellites (DYS19, DYS385I and II, DYS389I and II, DYS390, DYS391, DYS392, and DYS393) were determined in all 19 male chimpanzees; homology to human Y‐Short Tandem Repeat (STRs) was confirmed by sequencing. Good amplification results were not obtained for DYS19 and DYS385I/II. Two amplicons were obtained for DYS389I/II, but in contrast to humans, the larger fragment was not Y‐specific. Moreover, no polymorphism was observed for DYS434, DYS435, or GATA A10. Consequently, these eight STRs were eliminated from further analyses, and haplotype and allele frequencies were estimated for the remaining 12 STRs. A high haplotype diversity value was found (1.000 ± 0.017), demonstrating the usefulness and informative power of these Y‐STRs for future studies on chimpanzee population genetics.Am. J. Primatol. 57:21–29, 2002. © 2002 Wiley‐Liss, Inc.</abstract><cop>New York</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>11977123</pmid><doi>10.1002/ajp.1084</doi><tpages>9</tpages></addata></record> |
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| subjects | Amino Acid Sequence Animals Base Sequence Biological and medical sciences Chimpanzees Evolution, Molecular Female Fundamental and applied biological sciences. Psychology gene diversity Gene Frequency Genes Genetics haplotype diversity Haplotypes - genetics Humans Male Mammalia Microsatellite Repeats - genetics Pan troglodytes - genetics Polymerase Chain Reaction Polymorphism, Genetic - genetics Primates Primatology Sequence Homology, Amino Acid Short tandem repeat Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution Y Chromosome - genetics Y-STR |
| title | Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes) |
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