Sucrose phosphate synthase genes in plants belong to three different families
We present phylogenetic analyses to demonstrate that there are three families of sucrose phosphate synthase (SPS) genes present in higher plants. Two data sets were examined, one consisting of full-length proteins and a second larger set that covered a highly conserved region including the 14-3-3 bi...
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| Veröffentlicht in: | Journal of molecular evolution 2002-03, Vol.54 (3), p.322-332 |
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| container_title | Journal of molecular evolution |
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| creator | Langenkämper, Georg Fung, Raymond W M Newcomb, Richard D Atkinson, Ross G Gardner, Richard C MacRae, Elspeth A |
| description | We present phylogenetic analyses to demonstrate that there are three families of sucrose phosphate synthase (SPS) genes present in higher plants. Two data sets were examined, one consisting of full-length proteins and a second larger set that covered a highly conserved region including the 14-3-3 binding region and the UDPGlu active site. Analysis of both datasets showed a well supported separation of known genes into three families, designated A, B, and C. The genomic sequences of Arabidopsis thaliana include a member in each family: two genes on chromosome 5 belong to Family A, one gene on chromosome 1 to Family B, and one gene on chromosome 4 to Family C. Each of three Citrus genes belong to one of the three families. Intron/exon organization of the four Arabidopsis genes differed according to phylogenetic analysis, with members of the same family from different species having similar genomic organization of their SPS genes. The two Family A genes on Arabidopsis chromosome 5 appear to be due to a recent duplication. Analysis of published literature and ESTs indicated that functional differentiation of the families was not obvious, although B family members appear not to be expressed in roots. B family genes were cloned from two Actinidia species and southern analysis indicated the presence of a single gene family, which contrasts to the multiple members of Family A in Actinidia. Only two family C genes have been reported to date. |
| doi_str_mv | 10.1007/s00239-001-0047-4 |
| format | Article |
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Two data sets were examined, one consisting of full-length proteins and a second larger set that covered a highly conserved region including the 14-3-3 binding region and the UDPGlu active site. Analysis of both datasets showed a well supported separation of known genes into three families, designated A, B, and C. The genomic sequences of Arabidopsis thaliana include a member in each family: two genes on chromosome 5 belong to Family A, one gene on chromosome 1 to Family B, and one gene on chromosome 4 to Family C. Each of three Citrus genes belong to one of the three families. Intron/exon organization of the four Arabidopsis genes differed according to phylogenetic analysis, with members of the same family from different species having similar genomic organization of their SPS genes. The two Family A genes on Arabidopsis chromosome 5 appear to be due to a recent duplication. Analysis of published literature and ESTs indicated that functional differentiation of the families was not obvious, although B family members appear not to be expressed in roots. B family genes were cloned from two Actinidia species and southern analysis indicated the presence of a single gene family, which contrasts to the multiple members of Family A in Actinidia. Only two family C genes have been reported to date.</description><identifier>ISSN: 0022-2844</identifier><identifier>EISSN: 1432-1432</identifier><identifier>DOI: 10.1007/s00239-001-0047-4</identifier><identifier>PMID: 11847558</identifier><language>eng</language><publisher>Germany: Springer Nature B.V</publisher><subject>Actinidia ; Actinidia - classification ; Actinidia - genetics ; Amino Acid Sequence ; Arabidopsis - classification ; Arabidopsis - genetics ; Arabidopsis thaliana ; chromosome 1 ; chromosome 5 ; Citrus ; Enzymes ; Evolution, Molecular ; Evolutionary biology ; Genes, Plant ; Glucosyltransferases - genetics ; Introns ; Molecular Sequence Data ; Multigene Family ; Phosphates ; Phylogeny ; Plant biology ; Population genetics ; Ribonucleic acid ; RNA ; Sequence Alignment ; Sequence Analysis, DNA</subject><ispartof>Journal of molecular evolution, 2002-03, Vol.54 (3), p.322-332</ispartof><rights>Springer-Verlag New York Inc. 2002</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c336t-fed28cb6f090e59fb99f4fc8b94ff5530620b677eee239dedef9fc787967005c3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11847558$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Langenkämper, Georg</creatorcontrib><creatorcontrib>Fung, Raymond W M</creatorcontrib><creatorcontrib>Newcomb, Richard D</creatorcontrib><creatorcontrib>Atkinson, Ross G</creatorcontrib><creatorcontrib>Gardner, Richard C</creatorcontrib><creatorcontrib>MacRae, Elspeth A</creatorcontrib><title>Sucrose phosphate synthase genes in plants belong to three different families</title><title>Journal of molecular evolution</title><addtitle>J Mol Evol</addtitle><description>We present phylogenetic analyses to demonstrate that there are three families of sucrose phosphate synthase (SPS) genes present in higher plants. Two data sets were examined, one consisting of full-length proteins and a second larger set that covered a highly conserved region including the 14-3-3 binding region and the UDPGlu active site. Analysis of both datasets showed a well supported separation of known genes into three families, designated A, B, and C. The genomic sequences of Arabidopsis thaliana include a member in each family: two genes on chromosome 5 belong to Family A, one gene on chromosome 1 to Family B, and one gene on chromosome 4 to Family C. Each of three Citrus genes belong to one of the three families. Intron/exon organization of the four Arabidopsis genes differed according to phylogenetic analysis, with members of the same family from different species having similar genomic organization of their SPS genes. The two Family A genes on Arabidopsis chromosome 5 appear to be due to a recent duplication. Analysis of published literature and ESTs indicated that functional differentiation of the families was not obvious, although B family members appear not to be expressed in roots. B family genes were cloned from two Actinidia species and southern analysis indicated the presence of a single gene family, which contrasts to the multiple members of Family A in Actinidia. Only two family C genes have been reported to date.</description><subject>Actinidia</subject><subject>Actinidia - classification</subject><subject>Actinidia - genetics</subject><subject>Amino Acid Sequence</subject><subject>Arabidopsis - classification</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis thaliana</subject><subject>chromosome 1</subject><subject>chromosome 5</subject><subject>Citrus</subject><subject>Enzymes</subject><subject>Evolution, Molecular</subject><subject>Evolutionary biology</subject><subject>Genes, Plant</subject><subject>Glucosyltransferases - genetics</subject><subject>Introns</subject><subject>Molecular Sequence Data</subject><subject>Multigene Family</subject><subject>Phosphates</subject><subject>Phylogeny</subject><subject>Plant biology</subject><subject>Population genetics</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><issn>0022-2844</issn><issn>1432-1432</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkUlLBDEQhYMozjj6A7xI8OCtNftyFHGDEQ_qOfRSme6hNzvdh_n3ppkBwYuHJFD56lH1HkKXlNxSQvRdIIRxmxBC4xE6EUdoSQVnyXwdo2X8ZgkzQizQWQjbyGlp-SlaUGqEltIs0dvHlA9dANyXXejLdAQcdu1YprG0gRYCrlrc12k7BpxB3bUbPHZ4LAcAXFTewwDtiH3aVHUF4Ryd-LQOcHF4V-jr6fHz4SVZvz-_Ptyvk5xzNSYeCmbyTHliCUjrM2u98LnJrPBeSk4UI5nSGgDifgUU4K3PtdFWaUJkzlfoZq_bD933BGF0TRVyqOOc0E3BaSqkMpT8C1LDtFJERvD6D7jtpqGNSzjLjBaMRk9XiO6h2bIwgHf9UDXpsHOUuDkRt0_ERafdnIibe64OwlPWQPHbcYiA_wCqkoaL</recordid><startdate>200203</startdate><enddate>200203</enddate><creator>Langenkämper, Georg</creator><creator>Fung, Raymond W M</creator><creator>Newcomb, Richard D</creator><creator>Atkinson, Ross G</creator><creator>Gardner, Richard C</creator><creator>MacRae, Elspeth A</creator><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200203</creationdate><title>Sucrose phosphate synthase genes in plants belong to three different families</title><author>Langenkämper, Georg ; Fung, Raymond W M ; Newcomb, Richard D ; Atkinson, Ross G ; Gardner, Richard C ; MacRae, Elspeth A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c336t-fed28cb6f090e59fb99f4fc8b94ff5530620b677eee239dedef9fc787967005c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Actinidia</topic><topic>Actinidia - classification</topic><topic>Actinidia - genetics</topic><topic>Amino Acid Sequence</topic><topic>Arabidopsis - classification</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis thaliana</topic><topic>chromosome 1</topic><topic>chromosome 5</topic><topic>Citrus</topic><topic>Enzymes</topic><topic>Evolution, Molecular</topic><topic>Evolutionary biology</topic><topic>Genes, Plant</topic><topic>Glucosyltransferases - genetics</topic><topic>Introns</topic><topic>Molecular Sequence Data</topic><topic>Multigene Family</topic><topic>Phosphates</topic><topic>Phylogeny</topic><topic>Plant biology</topic><topic>Population genetics</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Langenkämper, Georg</creatorcontrib><creatorcontrib>Fung, Raymond W M</creatorcontrib><creatorcontrib>Newcomb, Richard D</creatorcontrib><creatorcontrib>Atkinson, Ross G</creatorcontrib><creatorcontrib>Gardner, Richard C</creatorcontrib><creatorcontrib>MacRae, Elspeth A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Langenkämper, Georg</au><au>Fung, Raymond W M</au><au>Newcomb, Richard D</au><au>Atkinson, Ross G</au><au>Gardner, Richard C</au><au>MacRae, Elspeth A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sucrose phosphate synthase genes in plants belong to three different families</atitle><jtitle>Journal of molecular evolution</jtitle><addtitle>J Mol Evol</addtitle><date>2002-03</date><risdate>2002</risdate><volume>54</volume><issue>3</issue><spage>322</spage><epage>332</epage><pages>322-332</pages><issn>0022-2844</issn><eissn>1432-1432</eissn><abstract>We present phylogenetic analyses to demonstrate that there are three families of sucrose phosphate synthase (SPS) genes present in higher plants. Two data sets were examined, one consisting of full-length proteins and a second larger set that covered a highly conserved region including the 14-3-3 binding region and the UDPGlu active site. Analysis of both datasets showed a well supported separation of known genes into three families, designated A, B, and C. The genomic sequences of Arabidopsis thaliana include a member in each family: two genes on chromosome 5 belong to Family A, one gene on chromosome 1 to Family B, and one gene on chromosome 4 to Family C. Each of three Citrus genes belong to one of the three families. Intron/exon organization of the four Arabidopsis genes differed according to phylogenetic analysis, with members of the same family from different species having similar genomic organization of their SPS genes. The two Family A genes on Arabidopsis chromosome 5 appear to be due to a recent duplication. Analysis of published literature and ESTs indicated that functional differentiation of the families was not obvious, although B family members appear not to be expressed in roots. B family genes were cloned from two Actinidia species and southern analysis indicated the presence of a single gene family, which contrasts to the multiple members of Family A in Actinidia. Only two family C genes have been reported to date.</abstract><cop>Germany</cop><pub>Springer Nature B.V</pub><pmid>11847558</pmid><doi>10.1007/s00239-001-0047-4</doi><tpages>11</tpages></addata></record> |
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| subjects | Actinidia Actinidia - classification Actinidia - genetics Amino Acid Sequence Arabidopsis - classification Arabidopsis - genetics Arabidopsis thaliana chromosome 1 chromosome 5 Citrus Enzymes Evolution, Molecular Evolutionary biology Genes, Plant Glucosyltransferases - genetics Introns Molecular Sequence Data Multigene Family Phosphates Phylogeny Plant biology Population genetics Ribonucleic acid RNA Sequence Alignment Sequence Analysis, DNA |
| title | Sucrose phosphate synthase genes in plants belong to three different families |
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