SMoS: a database of structural motifs of protein superfamilies
The Structural Motifs of Superfamilies (SMoS) database provides information about the structural motifs of aligned protein domain superfamilies. Such motifs among structurally aligned multiple members of protein superfamilies are recognized by the conservation of amino acid preference and solvent in...
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| Veröffentlicht in: | Protein engineering 2003-11, Vol.16 (11), p.791-793 |
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| container_issue | 11 |
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| container_title | Protein engineering |
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| creator | Chakrabarti, Saikat Venkatramanan, K. Sowdhamini, R. |
| description | The Structural Motifs of Superfamilies (SMoS) database provides information about the structural motifs of aligned protein domain superfamilies. Such motifs among structurally aligned multiple members of protein superfamilies are recognized by the conservation of amino acid preference and solvent inaccessibility and are examined for the conservation of other features like secondary structural content, hydrogen bonding, non‐polar interaction and residue packing. These motifs, along with their sequence and spatial orientation, represent the conserved core structure of each superfamily and also provide the minimal requirement of sequence and structural information to retain each superfamily fold. |
| doi_str_mv | 10.1093/protein/gzg110 |
| format | Article |
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These motifs, along with their sequence and spatial orientation, represent the conserved core structure of each superfamily and also provide the minimal requirement of sequence and structural information to retain each superfamily fold.</description><subject>Amino Acid Motifs</subject><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Databases, Protein</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Protein Structure, Secondary</subject><subject>Proteins - chemistry</subject><subject>Proteins - classification</subject><issn>0269-2139</issn><issn>1741-0126</issn><issn>1460-213X</issn><issn>1741-0134</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkEtLxDAQgIMouj6uHqV48FZ38mjSeBBkUVdQFFcX8RLSbCLVdrsmLai_3ixbFLzIHDJkvkxmPoT2MRxjkHS48E1ry_nw5esFY1hDA8w4pATTp3U0AMLlMpdbaDuEVwDIQZJNtBUhioGLATqd3DSTk0QnM93qQgebNC4Jre9M23ldJXXTli4sL_ufktAtrHe6LqvShl204XQV7F5_7qDHi_OH0Ti9vr28Gp1dp4YR0aY6xwaINZIZU3AuoYCM0kIITrRmNOfYMQeABXExOJVSZnpGHJOOGJ7N6A46WvWNU7x3NrSqLoOxVaXntumCEphBhmX-L0iAUSmYiODhH_C16fw8LqEIyZjMo6EIHa8g45sQvHVq4cta-0-FQS39q96KWvmPDw76rl1R29kv3guPQLoCytDaj5-69m8qVkWmxk_Pij5P7-8m01xN6TfS-ZFC</recordid><startdate>20031101</startdate><enddate>20031101</enddate><creator>Chakrabarti, Saikat</creator><creator>Venkatramanan, K.</creator><creator>Sowdhamini, R.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20031101</creationdate><title>SMoS: a database of structural motifs of protein superfamilies</title><author>Chakrabarti, Saikat ; Venkatramanan, K. ; Sowdhamini, R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c427t-a81c02ec94ccb6690b0533b7762aa43861f4f00172f2f2639995ad2f49f2c65d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Amino Acid Motifs</topic><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>Databases, Protein</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Protein Structure, Secondary</topic><topic>Proteins - chemistry</topic><topic>Proteins - classification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chakrabarti, Saikat</creatorcontrib><creatorcontrib>Venkatramanan, K.</creatorcontrib><creatorcontrib>Sowdhamini, R.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Protein engineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chakrabarti, Saikat</au><au>Venkatramanan, K.</au><au>Sowdhamini, R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SMoS: a database of structural motifs of protein superfamilies</atitle><jtitle>Protein engineering</jtitle><addtitle>Protein Eng</addtitle><date>2003-11-01</date><risdate>2003</risdate><volume>16</volume><issue>11</issue><spage>791</spage><epage>793</epage><pages>791-793</pages><issn>0269-2139</issn><issn>1741-0126</issn><eissn>1460-213X</eissn><eissn>1741-0134</eissn><abstract>The Structural Motifs of Superfamilies (SMoS) database provides information about the structural motifs of aligned protein domain superfamilies. 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| identifier | ISSN: 0269-2139 |
| ispartof | Protein engineering, 2003-11, Vol.16 (11), p.791-793 |
| issn | 0269-2139 1741-0126 1460-213X 1741-0134 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_71405198 |
| source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); EZB-FREE-00999 freely available EZB journals |
| subjects | Amino Acid Motifs Amino Acid Sequence Amino acids Databases, Protein Models, Molecular Molecular Sequence Data Protein Structure, Secondary Proteins - chemistry Proteins - classification |
| title | SMoS: a database of structural motifs of protein superfamilies |
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