Parameterization and Classification of the Protein Universe via Geometric Techniques

We present a scheme for the classification of 3487 non-redundant protein structures into 1207 non-hierarchical clusters by using recurring structural patterns of three to six amino acids as keys of classification. This results in several signature patterns, which seem to decide membership of a prote...

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Veröffentlicht in:	Journal of molecular biology 2003-11, Vol.334 (1), p.157-172
Hauptverfasser:	Tendulkar, Ashish V., Wangikar, Pramod P., Sohoni, Milind A., Samant, Vivekanand V., Mone, Chetan Y.
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Amino Acids Binding Sites clustering Evolution, Molecular functional site geometric invariants Models, Molecular Models, Theoretical protein structure comparison Protein Structure, Tertiary Proteins - chemistry Proteins - classification Proteins - metabolism protein–protein interface
Online-Zugang:	Volltext
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