Phylogeny of Astragalus in China: Molecular Evidence from the DNA Sequences of 5S rRNA Spacer, ITS, and 18S rRNA
Radix Astragali (root of Astragalus; Huangqi) is a traditional Chinese medicine commonly used as an immunostimulant, hepatoprotective, diuretic, antidiabetic, analgesic, expectorant, and sedative drug. Although the species of Radix Astragali have been defined as Astragalus membranaceus and A. membra...
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creator | Dong, Tina T. X Ma, Xiao Q Clarke, Clarles Song, Zong H Ji, Zhao N Lo, Chun K Tsim, Karl W. K |
description | Radix Astragali (root of Astragalus; Huangqi) is a traditional Chinese medicine commonly used as an immunostimulant, hepatoprotective, diuretic, antidiabetic, analgesic, expectorant, and sedative drug. Although the species of Radix Astragali have been defined as Astragalus membranaceus and A. membranaceus var. mongholicus in Pharmacopoeia of China, their taxonomy remains controversial. The phylogenetic relationships among 10 Astragalus taxa, which are commonly found in China including A. membranaceus, A. membranaceus var. mongholicus, Astragalus propinquus, Astragalus lepsensis, Astragalus aksuensis, Astragalus hoantchy, Astragalus hoantchy subsp. dshimensis, Astragalus lehmannianus, Astragalus sieversianus, and Astragalus austrosibiricus, were determined using the DNA sequences of the 5S ribosomal RNA (5S rRNA) spacer, internal transcribed spacer region (ITS), and 18S rRNA coding region. The 5S rRNA spacer, ITS, and 18S rRNA, amplified by polymerase chain reaction from the isolated genomic DNAs, were sequenced. By using neighbor-joining and maximum parsimony analyses, phylogenetic trees were mapped by their sequence diversity. A. membranaceus and A. membranaceus var. mongholicus shared the greatest sequence homology. In addition, A. propinquus shared a closer relationship with A. membranaceus and A. membranaceus var. mongholicus, while other Astragalus species were less closely related. This is the first paper to show the phylogenetic relationship of Astragalus species related to Radix Astragali in China by the molecular genetic approach. Keywords: Astragalus; DNA sequence; phylogeny; Radix Astragali |
doi_str_mv | 10.1021/jf034278x |
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X ; Ma, Xiao Q ; Clarke, Clarles ; Song, Zong H ; Ji, Zhao N ; Lo, Chun K ; Tsim, Karl W. K</creator><creatorcontrib>Dong, Tina T. X ; Ma, Xiao Q ; Clarke, Clarles ; Song, Zong H ; Ji, Zhao N ; Lo, Chun K ; Tsim, Karl W. K</creatorcontrib><description>Radix Astragali (root of Astragalus; Huangqi) is a traditional Chinese medicine commonly used as an immunostimulant, hepatoprotective, diuretic, antidiabetic, analgesic, expectorant, and sedative drug. Although the species of Radix Astragali have been defined as Astragalus membranaceus and A. membranaceus var. mongholicus in Pharmacopoeia of China, their taxonomy remains controversial. The phylogenetic relationships among 10 Astragalus taxa, which are commonly found in China including A. membranaceus, A. membranaceus var. mongholicus, Astragalus propinquus, Astragalus lepsensis, Astragalus aksuensis, Astragalus hoantchy, Astragalus hoantchy subsp. dshimensis, Astragalus lehmannianus, Astragalus sieversianus, and Astragalus austrosibiricus, were determined using the DNA sequences of the 5S ribosomal RNA (5S rRNA) spacer, internal transcribed spacer region (ITS), and 18S rRNA coding region. The 5S rRNA spacer, ITS, and 18S rRNA, amplified by polymerase chain reaction from the isolated genomic DNAs, were sequenced. By using neighbor-joining and maximum parsimony analyses, phylogenetic trees were mapped by their sequence diversity. A. membranaceus and A. membranaceus var. mongholicus shared the greatest sequence homology. In addition, A. propinquus shared a closer relationship with A. membranaceus and A. membranaceus var. mongholicus, while other Astragalus species were less closely related. This is the first paper to show the phylogenetic relationship of Astragalus species related to Radix Astragali in China by the molecular genetic approach. Keywords: Astragalus; DNA sequence; phylogeny; Radix Astragali</description><identifier>ISSN: 0021-8561</identifier><identifier>EISSN: 1520-5118</identifier><identifier>DOI: 10.1021/jf034278x</identifier><identifier>PMID: 14582964</identifier><identifier>CODEN: JAFCAU</identifier><language>eng</language><publisher>Washington, DC: American Chemical Society</publisher><subject>Agronomy. Soil science and plant productions ; Astragalus Plant - genetics ; Biological and medical sciences ; Classical genetics, quantitative genetics, hybrids ; DNA, Plant - chemistry ; DNA, Ribosomal Spacer - chemistry ; Fundamental and applied biological sciences. Psychology ; Generalities. Genetics. Plant material ; Genetics and breeding of economic plants ; Genetics of eukaryotes. Biological and molecular evolution ; Phylogeny ; Plant material ; Polymerase Chain Reaction ; Pteridophyta, spermatophyta ; RNA, Ribosomal, 18S - genetics ; RNA, Ribosomal, 5S - genetics ; Sequence Alignment ; Sequence Analysis, DNA ; Taxonomy ; Vegetals</subject><ispartof>Journal of agricultural and food chemistry, 2003-11, Vol.51 (23), p.6709-6714</ispartof><rights>Copyright © 2003 American Chemical Society</rights><rights>2004 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a445t-9be124022fe1cd7cd7eaa1a745b507715587332ec6a02dfdba78c5a8fb1336a43</citedby><cites>FETCH-LOGICAL-a445t-9be124022fe1cd7cd7eaa1a745b507715587332ec6a02dfdba78c5a8fb1336a43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jf034278x$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jf034278x$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,778,782,2754,27059,27907,27908,56721,56771</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15246904$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14582964$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Dong, Tina T. X</creatorcontrib><creatorcontrib>Ma, Xiao Q</creatorcontrib><creatorcontrib>Clarke, Clarles</creatorcontrib><creatorcontrib>Song, Zong H</creatorcontrib><creatorcontrib>Ji, Zhao N</creatorcontrib><creatorcontrib>Lo, Chun K</creatorcontrib><creatorcontrib>Tsim, Karl W. K</creatorcontrib><title>Phylogeny of Astragalus in China: Molecular Evidence from the DNA Sequences of 5S rRNA Spacer, ITS, and 18S rRNA</title><title>Journal of agricultural and food chemistry</title><addtitle>J. Agric. Food Chem</addtitle><description>Radix Astragali (root of Astragalus; Huangqi) is a traditional Chinese medicine commonly used as an immunostimulant, hepatoprotective, diuretic, antidiabetic, analgesic, expectorant, and sedative drug. Although the species of Radix Astragali have been defined as Astragalus membranaceus and A. membranaceus var. mongholicus in Pharmacopoeia of China, their taxonomy remains controversial. The phylogenetic relationships among 10 Astragalus taxa, which are commonly found in China including A. membranaceus, A. membranaceus var. mongholicus, Astragalus propinquus, Astragalus lepsensis, Astragalus aksuensis, Astragalus hoantchy, Astragalus hoantchy subsp. dshimensis, Astragalus lehmannianus, Astragalus sieversianus, and Astragalus austrosibiricus, were determined using the DNA sequences of the 5S ribosomal RNA (5S rRNA) spacer, internal transcribed spacer region (ITS), and 18S rRNA coding region. The 5S rRNA spacer, ITS, and 18S rRNA, amplified by polymerase chain reaction from the isolated genomic DNAs, were sequenced. By using neighbor-joining and maximum parsimony analyses, phylogenetic trees were mapped by their sequence diversity. A. membranaceus and A. membranaceus var. mongholicus shared the greatest sequence homology. In addition, A. propinquus shared a closer relationship with A. membranaceus and A. membranaceus var. mongholicus, while other Astragalus species were less closely related. This is the first paper to show the phylogenetic relationship of Astragalus species related to Radix Astragali in China by the molecular genetic approach. Keywords: Astragalus; DNA sequence; phylogeny; Radix Astragali</description><subject>Agronomy. Soil science and plant productions</subject><subject>Astragalus Plant - genetics</subject><subject>Biological and medical sciences</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>DNA, Plant - chemistry</subject><subject>DNA, Ribosomal Spacer - chemistry</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Generalities. Genetics. Plant material</subject><subject>Genetics and breeding of economic plants</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Phylogeny</subject><subject>Plant material</subject><subject>Polymerase Chain Reaction</subject><subject>Pteridophyta, spermatophyta</subject><subject>RNA, Ribosomal, 18S - genetics</subject><subject>RNA, Ribosomal, 5S - genetics</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Taxonomy</subject><subject>Vegetals</subject><issn>0021-8561</issn><issn>1520-5118</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkMFuEzEQhi1ERUPhwAsgX0BC6oLttdcOtxBKqFRKIIGrNesdN5tudoO9i5ob174mT8KuEjUXpJFGmv_Tr9FHyAvO3nIm-Lu1Z6kU2tw9IiOuBEsU5-YxGbE-TIzK-Cl5GuOaMWaUZk_IKZfKiHEmRyTOV7uqucF6RxtPJ7ENcANVF2lZ0-mqrOH93z_39EtToesqCPTid1lg7ZD60Gxou0L68XpCF_irG65xKFELGr4Pxy04DOf0crk4p1AXlJt98oyceKgiPj_sM_Lj08Vy-jm5-jq7nE6uEpBStck4Ry4kE8Ijd4XuBwE4aKlyxbTmShmdpgJdBkwUvshBG6fA-JynaQYyPSOv973b0PT_xdZuyuiwqqDGpotW85T3GkwPvtmDLjQxBvR2G8oNhJ3lzA6G7YPhnn15KO3yDRZH8qC0B14dAIgOKh-gdmU8ckrIbMwGLtlzZWzx7iGHcGsznWpll_OF_Tn9IGbf5td2duwFF-266ULdu_vPg_8ALCecqQ</recordid><startdate>20031105</startdate><enddate>20031105</enddate><creator>Dong, Tina T. X</creator><creator>Ma, Xiao Q</creator><creator>Clarke, Clarles</creator><creator>Song, Zong H</creator><creator>Ji, Zhao N</creator><creator>Lo, Chun K</creator><creator>Tsim, Karl W. K</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20031105</creationdate><title>Phylogeny of Astragalus in China: Molecular Evidence from the DNA Sequences of 5S rRNA Spacer, ITS, and 18S rRNA</title><author>Dong, Tina T. X ; Ma, Xiao Q ; Clarke, Clarles ; Song, Zong H ; Ji, Zhao N ; Lo, Chun K ; Tsim, Karl W. K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a445t-9be124022fe1cd7cd7eaa1a745b507715587332ec6a02dfdba78c5a8fb1336a43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>Astragalus Plant - genetics</topic><topic>Biological and medical sciences</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>DNA, Plant - chemistry</topic><topic>DNA, Ribosomal Spacer - chemistry</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Generalities. Genetics. Plant material</topic><topic>Genetics and breeding of economic plants</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Phylogeny</topic><topic>Plant material</topic><topic>Polymerase Chain Reaction</topic><topic>Pteridophyta, spermatophyta</topic><topic>RNA, Ribosomal, 18S - genetics</topic><topic>RNA, Ribosomal, 5S - genetics</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Taxonomy</topic><topic>Vegetals</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dong, Tina T. X</creatorcontrib><creatorcontrib>Ma, Xiao Q</creatorcontrib><creatorcontrib>Clarke, Clarles</creatorcontrib><creatorcontrib>Song, Zong H</creatorcontrib><creatorcontrib>Ji, Zhao N</creatorcontrib><creatorcontrib>Lo, Chun K</creatorcontrib><creatorcontrib>Tsim, Karl W. K</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of agricultural and food chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dong, Tina T. X</au><au>Ma, Xiao Q</au><au>Clarke, Clarles</au><au>Song, Zong H</au><au>Ji, Zhao N</au><au>Lo, Chun K</au><au>Tsim, Karl W. K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogeny of Astragalus in China: Molecular Evidence from the DNA Sequences of 5S rRNA Spacer, ITS, and 18S rRNA</atitle><jtitle>Journal of agricultural and food chemistry</jtitle><addtitle>J. Agric. Food Chem</addtitle><date>2003-11-05</date><risdate>2003</risdate><volume>51</volume><issue>23</issue><spage>6709</spage><epage>6714</epage><pages>6709-6714</pages><issn>0021-8561</issn><eissn>1520-5118</eissn><coden>JAFCAU</coden><abstract>Radix Astragali (root of Astragalus; Huangqi) is a traditional Chinese medicine commonly used as an immunostimulant, hepatoprotective, diuretic, antidiabetic, analgesic, expectorant, and sedative drug. Although the species of Radix Astragali have been defined as Astragalus membranaceus and A. membranaceus var. mongholicus in Pharmacopoeia of China, their taxonomy remains controversial. The phylogenetic relationships among 10 Astragalus taxa, which are commonly found in China including A. membranaceus, A. membranaceus var. mongholicus, Astragalus propinquus, Astragalus lepsensis, Astragalus aksuensis, Astragalus hoantchy, Astragalus hoantchy subsp. dshimensis, Astragalus lehmannianus, Astragalus sieversianus, and Astragalus austrosibiricus, were determined using the DNA sequences of the 5S ribosomal RNA (5S rRNA) spacer, internal transcribed spacer region (ITS), and 18S rRNA coding region. The 5S rRNA spacer, ITS, and 18S rRNA, amplified by polymerase chain reaction from the isolated genomic DNAs, were sequenced. By using neighbor-joining and maximum parsimony analyses, phylogenetic trees were mapped by their sequence diversity. A. membranaceus and A. membranaceus var. mongholicus shared the greatest sequence homology. In addition, A. propinquus shared a closer relationship with A. membranaceus and A. membranaceus var. mongholicus, while other Astragalus species were less closely related. This is the first paper to show the phylogenetic relationship of Astragalus species related to Radix Astragali in China by the molecular genetic approach. Keywords: Astragalus; DNA sequence; phylogeny; Radix Astragali</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>14582964</pmid><doi>10.1021/jf034278x</doi><tpages>6</tpages></addata></record> |
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subjects | Agronomy. Soil science and plant productions Astragalus Plant - genetics Biological and medical sciences Classical genetics, quantitative genetics, hybrids DNA, Plant - chemistry DNA, Ribosomal Spacer - chemistry Fundamental and applied biological sciences. Psychology Generalities. Genetics. Plant material Genetics and breeding of economic plants Genetics of eukaryotes. Biological and molecular evolution Phylogeny Plant material Polymerase Chain Reaction Pteridophyta, spermatophyta RNA, Ribosomal, 18S - genetics RNA, Ribosomal, 5S - genetics Sequence Alignment Sequence Analysis, DNA Taxonomy Vegetals |
title | Phylogeny of Astragalus in China: Molecular Evidence from the DNA Sequences of 5S rRNA Spacer, ITS, and 18S rRNA |
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