A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/ GPC6 gene cluster on chromosome 13q32
The glypicans compose a family of glycosylphosphatidylinositol-anchored heparan sulfate proteoglycans that may play a role in the control of cell division and growth regulation. So far, six members (GPC1–6) of this family are known in vertebrates. We report the construction of a high-resolution 4 Mb...
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| Veröffentlicht in: | Matrix biology 2001-09, Vol.20 (5), p.375-385 |
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| creator | Veugelers, Mark De Cat, Bart Delande, Nathalie Esselens, Carl Bonk, Ines Vermeesch, Joris Marynen, Peter Fryns, Jean-Pierre David, Guido |
| description | The glypicans compose a family of glycosylphosphatidylinositol-anchored heparan sulfate proteoglycans that may play a role in the control of cell division and growth regulation. So far, six members (GPC1–6) of this family are known in vertebrates. We report the construction of a high-resolution 4 Mb sequence-ready BAC/PAC contig of the
GPC5/
GPC6 gene cluster on chromosome region 13q32. The contig indicates that, like the
GPC3/
GPC4 genes on Xq26,
GPC5 and
GPC6 are arranged in tandem array. Both
GPC5 and
GPC6 are very large genes, with sizes well over 1 Mb. With a size of approximately 2 Mb,
GPC5 would be the second largest human gene identified to date. Comparison of the long range gene organisation on 13q and Xq, suggests that these chromosomes share several regions of homology. Mutations and deletions affecting
GPC3 are associated with the Simpson–Golabi–Behmel overgrowth syndrome. Mutational analysis of
GPC5 and
GPC6 in 19 patients with somatic overgrowth failed to reveal pathologic mutations in either of these genes, but identified several coding region polymorphisms. |
| doi_str_mv | 10.1016/S0945-053X(01)00143-3 |
| format | Article |
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GPC5/
GPC6 gene cluster on chromosome region 13q32. The contig indicates that, like the
GPC3/
GPC4 genes on Xq26,
GPC5 and
GPC6 are arranged in tandem array. Both
GPC5 and
GPC6 are very large genes, with sizes well over 1 Mb. With a size of approximately 2 Mb,
GPC5 would be the second largest human gene identified to date. Comparison of the long range gene organisation on 13q and Xq, suggests that these chromosomes share several regions of homology. Mutations and deletions affecting
GPC3 are associated with the Simpson–Golabi–Behmel overgrowth syndrome. Mutational analysis of
GPC5 and
GPC6 in 19 patients with somatic overgrowth failed to reveal pathologic mutations in either of these genes, but identified several coding region polymorphisms.</description><identifier>ISSN: 0945-053X</identifier><identifier>EISSN: 1569-1802</identifier><identifier>DOI: 10.1016/S0945-053X(01)00143-3</identifier><identifier>PMID: 11566272</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Base Sequence ; Beckwith-Wiedemann Syndrome - genetics ; Chromosomes, Human, Pair 13 - genetics ; Contig Mapping - methods ; Exons - genetics ; Extracellular Matrix Proteins ; Gene structure ; Glypican ; Glypicans ; Heparan Sulfate Proteoglycans - genetics ; Humans ; Molecular Sequence Data ; Multigene Family - genetics ; Overgrowth syndrome ; Polymorphism, Genetic - genetics ; Proteoglycan ; Sequence Homology ; Sequence polymorphisms</subject><ispartof>Matrix biology, 2001-09, Vol.20 (5), p.375-385</ispartof><rights>2001 Elsevier Science B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c361t-5d8b4d2c73e5128d8cc4c8d9264a96a41889f73b364812738ed56da0c5056e83</citedby><cites>FETCH-LOGICAL-c361t-5d8b4d2c73e5128d8cc4c8d9264a96a41889f73b364812738ed56da0c5056e83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/S0945-053X(01)00143-3$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27929,27930,46000</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11566272$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Veugelers, Mark</creatorcontrib><creatorcontrib>De Cat, Bart</creatorcontrib><creatorcontrib>Delande, Nathalie</creatorcontrib><creatorcontrib>Esselens, Carl</creatorcontrib><creatorcontrib>Bonk, Ines</creatorcontrib><creatorcontrib>Vermeesch, Joris</creatorcontrib><creatorcontrib>Marynen, Peter</creatorcontrib><creatorcontrib>Fryns, Jean-Pierre</creatorcontrib><creatorcontrib>David, Guido</creatorcontrib><title>A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/ GPC6 gene cluster on chromosome 13q32</title><title>Matrix biology</title><addtitle>Matrix Biol</addtitle><description>The glypicans compose a family of glycosylphosphatidylinositol-anchored heparan sulfate proteoglycans that may play a role in the control of cell division and growth regulation. So far, six members (GPC1–6) of this family are known in vertebrates. We report the construction of a high-resolution 4 Mb sequence-ready BAC/PAC contig of the
GPC5/
GPC6 gene cluster on chromosome region 13q32. The contig indicates that, like the
GPC3/
GPC4 genes on Xq26,
GPC5 and
GPC6 are arranged in tandem array. Both
GPC5 and
GPC6 are very large genes, with sizes well over 1 Mb. With a size of approximately 2 Mb,
GPC5 would be the second largest human gene identified to date. Comparison of the long range gene organisation on 13q and Xq, suggests that these chromosomes share several regions of homology. Mutations and deletions affecting
GPC3 are associated with the Simpson–Golabi–Behmel overgrowth syndrome. Mutational analysis of
GPC5 and
GPC6 in 19 patients with somatic overgrowth failed to reveal pathologic mutations in either of these genes, but identified several coding region polymorphisms.</description><subject>Base Sequence</subject><subject>Beckwith-Wiedemann Syndrome - genetics</subject><subject>Chromosomes, Human, Pair 13 - genetics</subject><subject>Contig Mapping - methods</subject><subject>Exons - genetics</subject><subject>Extracellular Matrix Proteins</subject><subject>Gene structure</subject><subject>Glypican</subject><subject>Glypicans</subject><subject>Heparan Sulfate Proteoglycans - genetics</subject><subject>Humans</subject><subject>Molecular Sequence Data</subject><subject>Multigene Family - genetics</subject><subject>Overgrowth syndrome</subject><subject>Polymorphism, Genetic - genetics</subject><subject>Proteoglycan</subject><subject>Sequence Homology</subject><subject>Sequence polymorphisms</subject><issn>0945-053X</issn><issn>1569-1802</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMtO5DAQRS0EgubxCSCvECwy7YofcVaoiWaYkRgNEizYWWm7uglK4sZ2kObvST8ESzZVtTi3SnUIOQf2Axio6SMrhcyY5M9XDK4ZA8EzvkcmIFWZgWb5Ppl8IkfkOMZXxpgQhT4kRzBSKi_yCVnOqMj-zuntrJo-zCpqfZ-aJa17N47dqsWEdIm97xpLYwqDTUNA6hc0vSC9e6jkdF3VmkFq2yEmDNT31L4E3_noO6TA33h-Sg4WdRvxbNdPyNOvn0_V7-z-392fanafWa4gZdLpuXC5LThKyLXT1gqrXZkrUZeqFqB1uSj4nCuhIS-4RieVq5mVTCrU_IRcbteugn8bMCbTNdFi29Y9-iGaAkALJosRlFvQBh9jwIVZhaarw38DzKwFm41gs7ZnGJiNYMPH3MXuwDDv0H2ldkZH4GYL4Pjle4PBRNtgb9E1AW0yzjffnPgAnN2HUQ</recordid><startdate>20010901</startdate><enddate>20010901</enddate><creator>Veugelers, Mark</creator><creator>De Cat, Bart</creator><creator>Delande, Nathalie</creator><creator>Esselens, Carl</creator><creator>Bonk, Ines</creator><creator>Vermeesch, Joris</creator><creator>Marynen, Peter</creator><creator>Fryns, Jean-Pierre</creator><creator>David, Guido</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20010901</creationdate><title>A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/ GPC6 gene cluster on chromosome 13q32</title><author>Veugelers, Mark ; De Cat, Bart ; Delande, Nathalie ; Esselens, Carl ; Bonk, Ines ; Vermeesch, Joris ; Marynen, Peter ; Fryns, Jean-Pierre ; David, Guido</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c361t-5d8b4d2c73e5128d8cc4c8d9264a96a41889f73b364812738ed56da0c5056e83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Base Sequence</topic><topic>Beckwith-Wiedemann Syndrome - genetics</topic><topic>Chromosomes, Human, Pair 13 - genetics</topic><topic>Contig Mapping - methods</topic><topic>Exons - genetics</topic><topic>Extracellular Matrix Proteins</topic><topic>Gene structure</topic><topic>Glypican</topic><topic>Glypicans</topic><topic>Heparan Sulfate Proteoglycans - genetics</topic><topic>Humans</topic><topic>Molecular Sequence Data</topic><topic>Multigene Family - genetics</topic><topic>Overgrowth syndrome</topic><topic>Polymorphism, Genetic - genetics</topic><topic>Proteoglycan</topic><topic>Sequence Homology</topic><topic>Sequence polymorphisms</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Veugelers, Mark</creatorcontrib><creatorcontrib>De Cat, Bart</creatorcontrib><creatorcontrib>Delande, Nathalie</creatorcontrib><creatorcontrib>Esselens, Carl</creatorcontrib><creatorcontrib>Bonk, Ines</creatorcontrib><creatorcontrib>Vermeesch, Joris</creatorcontrib><creatorcontrib>Marynen, Peter</creatorcontrib><creatorcontrib>Fryns, Jean-Pierre</creatorcontrib><creatorcontrib>David, Guido</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Matrix biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Veugelers, Mark</au><au>De Cat, Bart</au><au>Delande, Nathalie</au><au>Esselens, Carl</au><au>Bonk, Ines</au><au>Vermeesch, Joris</au><au>Marynen, Peter</au><au>Fryns, Jean-Pierre</au><au>David, Guido</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/ GPC6 gene cluster on chromosome 13q32</atitle><jtitle>Matrix biology</jtitle><addtitle>Matrix Biol</addtitle><date>2001-09-01</date><risdate>2001</risdate><volume>20</volume><issue>5</issue><spage>375</spage><epage>385</epage><pages>375-385</pages><issn>0945-053X</issn><eissn>1569-1802</eissn><abstract>The glypicans compose a family of glycosylphosphatidylinositol-anchored heparan sulfate proteoglycans that may play a role in the control of cell division and growth regulation. So far, six members (GPC1–6) of this family are known in vertebrates. We report the construction of a high-resolution 4 Mb sequence-ready BAC/PAC contig of the
GPC5/
GPC6 gene cluster on chromosome region 13q32. The contig indicates that, like the
GPC3/
GPC4 genes on Xq26,
GPC5 and
GPC6 are arranged in tandem array. Both
GPC5 and
GPC6 are very large genes, with sizes well over 1 Mb. With a size of approximately 2 Mb,
GPC5 would be the second largest human gene identified to date. Comparison of the long range gene organisation on 13q and Xq, suggests that these chromosomes share several regions of homology. Mutations and deletions affecting
GPC3 are associated with the Simpson–Golabi–Behmel overgrowth syndrome. Mutational analysis of
GPC5 and
GPC6 in 19 patients with somatic overgrowth failed to reveal pathologic mutations in either of these genes, but identified several coding region polymorphisms.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>11566272</pmid><doi>10.1016/S0945-053X(01)00143-3</doi><tpages>11</tpages></addata></record> |
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| ispartof | Matrix biology, 2001-09, Vol.20 (5), p.375-385 |
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| subjects | Base Sequence Beckwith-Wiedemann Syndrome - genetics Chromosomes, Human, Pair 13 - genetics Contig Mapping - methods Exons - genetics Extracellular Matrix Proteins Gene structure Glypican Glypicans Heparan Sulfate Proteoglycans - genetics Humans Molecular Sequence Data Multigene Family - genetics Overgrowth syndrome Polymorphism, Genetic - genetics Proteoglycan Sequence Homology Sequence polymorphisms |
| title | A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/ GPC6 gene cluster on chromosome 13q32 |
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