Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding
Fibers of pilin monomers (pili) form the dominant adhesin of Pseudomonas aeruginosa, and they play an important role in infections by this opportunistic bacterial pathogen. Blocking adhesion is therefore a target for vaccine development. The receptor-binding site is located in a C-terminal disulphid...
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Veröffentlicht in: | Journal of molecular biology 2000-06, Vol.299 (4), p.1005-1017 |
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creator | Hazes, B Sastry, P A Hayakawa, K Read, R J Irvin, R T |
description | Fibers of pilin monomers (pili) form the dominant adhesin of Pseudomonas aeruginosa, and they play an important role in infections by this opportunistic bacterial pathogen. Blocking adhesion is therefore a target for vaccine development. The receptor-binding site is located in a C-terminal disulphide-bonded loop of each pilin monomer, but functional binding sites are displayed only at the tip of the pilus. A factor complicating vaccination is that different bacterial strains produce distinct, and sometimes highly divergent, pilin variants. It is surprising that all strains still appear to bind a common receptor, asialo-GM1. Here, we present the 1.63 A crystal structure of pilin from P. aeruginosa strain PAK. The structure shows that the proposed receptor-binding site is formed by two beta-turns that create a surface dominated by main-chain atoms. Receptor specificity could therefore be maintained, whilst allowing side-chain variation, if the main-chain conformation is conserved. The location of the binding site relative to the proposed packing of the pilus fiber raises new issues and suggests that the current fiber model may have to be reconsidered. Finally, the structure of the C-terminal disulphide-bonded loop will provide the template for the structure-based design of a consensus sequence vaccine. |
doi_str_mv | 10.1006/jmbi.2000.3801 |
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Blocking adhesion is therefore a target for vaccine development. The receptor-binding site is located in a C-terminal disulphide-bonded loop of each pilin monomer, but functional binding sites are displayed only at the tip of the pilus. A factor complicating vaccination is that different bacterial strains produce distinct, and sometimes highly divergent, pilin variants. It is surprising that all strains still appear to bind a common receptor, asialo-GM1. Here, we present the 1.63 A crystal structure of pilin from P. aeruginosa strain PAK. The structure shows that the proposed receptor-binding site is formed by two beta-turns that create a surface dominated by main-chain atoms. Receptor specificity could therefore be maintained, whilst allowing side-chain variation, if the main-chain conformation is conserved. The location of the binding site relative to the proposed packing of the pilus fiber raises new issues and suggests that the current fiber model may have to be reconsidered. Finally, the structure of the C-terminal disulphide-bonded loop will provide the template for the structure-based design of a consensus sequence vaccine.</description><identifier>ISSN: 0022-2836</identifier><identifier>DOI: 10.1006/jmbi.2000.3801</identifier><identifier>PMID: 10843854</identifier><language>eng</language><publisher>England</publisher><subject>Amino Acid Sequence ; Antigens, Bacterial - chemistry ; Antigens, Bacterial - metabolism ; Bacterial Vaccines - chemistry ; Binding Sites ; Crystallization ; Crystallography, X-Ray ; Disulfides - metabolism ; Fimbriae Proteins ; G(M1) Ganglioside - metabolism ; Glycosylation ; Membrane Proteins - chemistry ; Membrane Proteins - classification ; Membrane Proteins - metabolism ; Models, Molecular ; Molecular Sequence Data ; Peptide Fragments - chemistry ; Peptide Fragments - metabolism ; pilin ; Protein Structure, Secondary ; Pseudomonas aeruginosa ; Pseudomonas aeruginosa - chemistry ; Pseudomonas aeruginosa - classification ; Sequence Alignment ; Substrate Specificity ; Vaccines, Synthetic - chemistry</subject><ispartof>Journal of molecular biology, 2000-06, Vol.299 (4), p.1005-1017</ispartof><rights>Copyright 2000 Academic Press.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10843854$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hazes, B</creatorcontrib><creatorcontrib>Sastry, P A</creatorcontrib><creatorcontrib>Hayakawa, K</creatorcontrib><creatorcontrib>Read, R J</creatorcontrib><creatorcontrib>Irvin, R T</creatorcontrib><title>Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>Fibers of pilin monomers (pili) form the dominant adhesin of Pseudomonas aeruginosa, and they play an important role in infections by this opportunistic bacterial pathogen. Blocking adhesion is therefore a target for vaccine development. The receptor-binding site is located in a C-terminal disulphide-bonded loop of each pilin monomer, but functional binding sites are displayed only at the tip of the pilus. A factor complicating vaccination is that different bacterial strains produce distinct, and sometimes highly divergent, pilin variants. It is surprising that all strains still appear to bind a common receptor, asialo-GM1. Here, we present the 1.63 A crystal structure of pilin from P. aeruginosa strain PAK. The structure shows that the proposed receptor-binding site is formed by two beta-turns that create a surface dominated by main-chain atoms. Receptor specificity could therefore be maintained, whilst allowing side-chain variation, if the main-chain conformation is conserved. The location of the binding site relative to the proposed packing of the pilus fiber raises new issues and suggests that the current fiber model may have to be reconsidered. Finally, the structure of the C-terminal disulphide-bonded loop will provide the template for the structure-based design of a consensus sequence vaccine.</description><subject>Amino Acid Sequence</subject><subject>Antigens, Bacterial - chemistry</subject><subject>Antigens, Bacterial - metabolism</subject><subject>Bacterial Vaccines - chemistry</subject><subject>Binding Sites</subject><subject>Crystallization</subject><subject>Crystallography, X-Ray</subject><subject>Disulfides - metabolism</subject><subject>Fimbriae Proteins</subject><subject>G(M1) Ganglioside - metabolism</subject><subject>Glycosylation</subject><subject>Membrane Proteins - chemistry</subject><subject>Membrane Proteins - classification</subject><subject>Membrane Proteins - metabolism</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Peptide Fragments - chemistry</subject><subject>Peptide Fragments - metabolism</subject><subject>pilin</subject><subject>Protein Structure, Secondary</subject><subject>Pseudomonas aeruginosa</subject><subject>Pseudomonas aeruginosa - chemistry</subject><subject>Pseudomonas aeruginosa - classification</subject><subject>Sequence Alignment</subject><subject>Substrate Specificity</subject><subject>Vaccines, Synthetic - chemistry</subject><issn>0022-2836</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkL1PwzAUxD2AaCmsjMgTW8qzndjJWFV8iUp0gDly_BFcJXawk4H_ngBlZrk33O-dTofQFYE1AeC3h75xawoAa1YCOUFLAEozWjK-QOcpHWanYHl5hhYEypyVRb5Efhs_0yg7nMY4qXGKBgeL98lMOvTBy4SliVPrfEgS7zfPeHCd8zhNbWvSOLu4l85n6v1b5xfn5Wg07oP-CYpGmWEMETfOa-fbC3RqZZfM5fGu0Nv93ev2Mdu9PDxtN7tsoKwcs8rkQHkpBWdMKGt0TqzNuSJNpW2hbGF5wwQoI7StGqYoWMgrqypNddMYYCt085s7xPAxzU3r3iVluk56E6ZUC0IE5cD_BYng84ggZvD6CE5Nb3Q9RNfL-Fn_Tcm-ACzkdn0</recordid><startdate>20000616</startdate><enddate>20000616</enddate><creator>Hazes, B</creator><creator>Sastry, P A</creator><creator>Hayakawa, K</creator><creator>Read, R J</creator><creator>Irvin, R T</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20000616</creationdate><title>Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding</title><author>Hazes, B ; Sastry, P A ; Hayakawa, K ; Read, R J ; Irvin, R T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p238t-9e40268a76337cfed41ff46c1b9df5cf5f6b370ce7df9b3c20f049fc9d2dbbe03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Amino Acid Sequence</topic><topic>Antigens, Bacterial - chemistry</topic><topic>Antigens, Bacterial - metabolism</topic><topic>Bacterial Vaccines - chemistry</topic><topic>Binding Sites</topic><topic>Crystallization</topic><topic>Crystallography, X-Ray</topic><topic>Disulfides - metabolism</topic><topic>Fimbriae Proteins</topic><topic>G(M1) Ganglioside - metabolism</topic><topic>Glycosylation</topic><topic>Membrane Proteins - chemistry</topic><topic>Membrane Proteins - classification</topic><topic>Membrane Proteins - metabolism</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Peptide Fragments - chemistry</topic><topic>Peptide Fragments - metabolism</topic><topic>pilin</topic><topic>Protein Structure, Secondary</topic><topic>Pseudomonas aeruginosa</topic><topic>Pseudomonas aeruginosa - chemistry</topic><topic>Pseudomonas aeruginosa - classification</topic><topic>Sequence Alignment</topic><topic>Substrate Specificity</topic><topic>Vaccines, Synthetic - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hazes, B</creatorcontrib><creatorcontrib>Sastry, P A</creatorcontrib><creatorcontrib>Hayakawa, K</creatorcontrib><creatorcontrib>Read, R J</creatorcontrib><creatorcontrib>Irvin, R T</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hazes, B</au><au>Sastry, P A</au><au>Hayakawa, K</au><au>Read, R J</au><au>Irvin, R T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>2000-06-16</date><risdate>2000</risdate><volume>299</volume><issue>4</issue><spage>1005</spage><epage>1017</epage><pages>1005-1017</pages><issn>0022-2836</issn><abstract>Fibers of pilin monomers (pili) form the dominant adhesin of Pseudomonas aeruginosa, and they play an important role in infections by this opportunistic bacterial pathogen. Blocking adhesion is therefore a target for vaccine development. The receptor-binding site is located in a C-terminal disulphide-bonded loop of each pilin monomer, but functional binding sites are displayed only at the tip of the pilus. A factor complicating vaccination is that different bacterial strains produce distinct, and sometimes highly divergent, pilin variants. It is surprising that all strains still appear to bind a common receptor, asialo-GM1. Here, we present the 1.63 A crystal structure of pilin from P. aeruginosa strain PAK. The structure shows that the proposed receptor-binding site is formed by two beta-turns that create a surface dominated by main-chain atoms. Receptor specificity could therefore be maintained, whilst allowing side-chain variation, if the main-chain conformation is conserved. The location of the binding site relative to the proposed packing of the pilus fiber raises new issues and suggests that the current fiber model may have to be reconsidered. 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subjects | Amino Acid Sequence Antigens, Bacterial - chemistry Antigens, Bacterial - metabolism Bacterial Vaccines - chemistry Binding Sites Crystallization Crystallography, X-Ray Disulfides - metabolism Fimbriae Proteins G(M1) Ganglioside - metabolism Glycosylation Membrane Proteins - chemistry Membrane Proteins - classification Membrane Proteins - metabolism Models, Molecular Molecular Sequence Data Peptide Fragments - chemistry Peptide Fragments - metabolism pilin Protein Structure, Secondary Pseudomonas aeruginosa Pseudomonas aeruginosa - chemistry Pseudomonas aeruginosa - classification Sequence Alignment Substrate Specificity Vaccines, Synthetic - chemistry |
title | Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding |
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