Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov
SD Lee, ES Kim, JH Roe, J Kim, SO Kang and YC Hah Department of Microbiology, College of Natural Sciences and Research Center for Molecular Microbiology, Seoul National University, Seoul 151-742, Republic of Korea The generic position of two isolates from soils inside a gold mine cave in Kongju, Kor...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2000-05, Vol.50 (3), p.1315-1323 |
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| creator | Lee, SD Kim, ES Roe, JH Kim, J Kang, SO Hah, YC |
| description | SD Lee, ES Kim, JH Roe, J Kim, SO Kang and YC Hah
Department of Microbiology, College of Natural Sciences and Research Center for Molecular Microbiology, Seoul National University, Seoul 151-742, Republic of Korea
The generic position of two isolates from soils inside a gold mine cave in
Kongju, Korea, was determined by 16S rDNA sequencing and chemotaxonomic
characteristics. Phylogenetic analysis indicated that both of the isolates
formed a clade with Lentzea albidocapillata and members of the genus
Saccharothrix of the family Pseudonocardiaceae. The chemical composition of
the isolates and of Lentzea albidocapillata was consistent with that of the
genus Saccharothrix, which is characterized by a type III cell wall (the
meso-isomer of diaminopimelic acid, and galactose and rhamnose as
characteristic whole-cell sugars), MK-9(H(4)) as the major menaquinone, and
a phospholipid type PII pattern (phosphatidylethanolamine as a diagnostic
phospholipid). The combination of morphological features, chemotaxonomic
characters and phylogenetic data supported the proposal that Lentzea
albidocapillata, the only and type strain of the genus Lentzea, should be
transferred to the genus Saccharothrix. On the basis of physiological
properties, cellular fatty acid composition and DNA--DNA hybridization
data, two new species within the genus Saccharothrix are proposed:
Saccharothrix violacea sp. nov., type strain LM 036(T) (=IMSNU 50388(T)),
and Saccharothrix albidocapillata comb. nov., type strain DSM 44073(T)
(=IMSNU 21253(T)). |
| doi_str_mv | 10.1099/00207713-50-3-1315 |
| format | Article |
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Department of Microbiology, College of Natural Sciences and Research Center for Molecular Microbiology, Seoul National University, Seoul 151-742, Republic of Korea
The generic position of two isolates from soils inside a gold mine cave in
Kongju, Korea, was determined by 16S rDNA sequencing and chemotaxonomic
characteristics. Phylogenetic analysis indicated that both of the isolates
formed a clade with Lentzea albidocapillata and members of the genus
Saccharothrix of the family Pseudonocardiaceae. The chemical composition of
the isolates and of Lentzea albidocapillata was consistent with that of the
genus Saccharothrix, which is characterized by a type III cell wall (the
meso-isomer of diaminopimelic acid, and galactose and rhamnose as
characteristic whole-cell sugars), MK-9(H(4)) as the major menaquinone, and
a phospholipid type PII pattern (phosphatidylethanolamine as a diagnostic
phospholipid). The combination of morphological features, chemotaxonomic
characters and phylogenetic data supported the proposal that Lentzea
albidocapillata, the only and type strain of the genus Lentzea, should be
transferred to the genus Saccharothrix. On the basis of physiological
properties, cellular fatty acid composition and DNA--DNA hybridization
data, two new species within the genus Saccharothrix are proposed:
Saccharothrix violacea sp. nov., type strain LM 036(T) (=IMSNU 50388(T)),
and Saccharothrix albidocapillata comb. nov., type strain DSM 44073(T)
(=IMSNU 21253(T)).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/00207713-50-3-1315</identifier><identifier>PMID: 10843077</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Actinomycetales - classification ; Actinomycetales - cytology ; Actinomycetales - isolation & purification ; Actinomycetales - physiology ; Bacteriology ; Biological and medical sciences ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Gold ; Korea ; Microbiology ; Microscopy, Electron, Scanning ; Mining ; Molecular Sequence Data ; Phenotype ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Saccharothrix albidocapillata ; Saccharothrix violacea ; Sequence Analysis, DNA ; Soil Microbiology ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2000-05, Vol.50 (3), p.1315-1323</ispartof><rights>2000 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c502t-e31aca322b21353b9b6b2abf2f196a789d51ef2060d550ea4fa4ba4bb65471d83</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>310,311,315,781,785,790,791,3747,3748,23932,23933,25142,27926,27927</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1503968$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10843077$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, SD</creatorcontrib><creatorcontrib>Kim, ES</creatorcontrib><creatorcontrib>Roe, JH</creatorcontrib><creatorcontrib>Kim, J</creatorcontrib><creatorcontrib>Kang, SO</creatorcontrib><creatorcontrib>Hah, YC</creatorcontrib><title>Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>SD Lee, ES Kim, JH Roe, J Kim, SO Kang and YC Hah
Department of Microbiology, College of Natural Sciences and Research Center for Molecular Microbiology, Seoul National University, Seoul 151-742, Republic of Korea
The generic position of two isolates from soils inside a gold mine cave in
Kongju, Korea, was determined by 16S rDNA sequencing and chemotaxonomic
characteristics. Phylogenetic analysis indicated that both of the isolates
formed a clade with Lentzea albidocapillata and members of the genus
Saccharothrix of the family Pseudonocardiaceae. The chemical composition of
the isolates and of Lentzea albidocapillata was consistent with that of the
genus Saccharothrix, which is characterized by a type III cell wall (the
meso-isomer of diaminopimelic acid, and galactose and rhamnose as
characteristic whole-cell sugars), MK-9(H(4)) as the major menaquinone, and
a phospholipid type PII pattern (phosphatidylethanolamine as a diagnostic
phospholipid). The combination of morphological features, chemotaxonomic
characters and phylogenetic data supported the proposal that Lentzea
albidocapillata, the only and type strain of the genus Lentzea, should be
transferred to the genus Saccharothrix. On the basis of physiological
properties, cellular fatty acid composition and DNA--DNA hybridization
data, two new species within the genus Saccharothrix are proposed:
Saccharothrix violacea sp. nov., type strain LM 036(T) (=IMSNU 50388(T)),
and Saccharothrix albidocapillata comb. nov., type strain DSM 44073(T)
(=IMSNU 21253(T)).</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - cytology</subject><subject>Actinomycetales - isolation & purification</subject><subject>Actinomycetales - physiology</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gold</subject><subject>Korea</subject><subject>Microbiology</subject><subject>Microscopy, Electron, Scanning</subject><subject>Mining</subject><subject>Molecular Sequence Data</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Saccharothrix albidocapillata</subject><subject>Saccharothrix violacea</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUtLAzEUhYMotlb_gAvJQsSFU_OYZDpLKb5AcKGuw00m00ZmJjVpq_57U1tfKyGQcPnOuYcchA4pGVJSlueEMFIUlGeCZDyjnIot1Ke5lGnA8-3vN5M9tBfjMyFpQMgu6lEyynnS9lHzAMZMIfj5NLg3vHS-AWMBx9kQd345PMMuptHcVrgOvsWAJ76pcOs6iw0s7RmGrsJ_TaDRrvIGZq5JSsDGt_rTbR_t1NBEe7C5B-jp6vJxfJPd3V_fji_uMpPCzjPLKRjgjGlGueC61FIz0DWraSmhGJWVoLZmRJJKCGIhryHX6Wgp8oJWIz5AJ2vfWfAvCxvnqnXR2JSms34RVUGpLJj4H6SFHAnGiwSyNWiCjzHYWs2CayG8K0rUqgz1VYYSRHG1KiOJjjbuC93a6pdk_fsJON4AEA00dYDOuPjDpRpLuUp5usambjJ9dcGqie1al6Jo55V7jj8rPwDmaJ8y</recordid><startdate>20000501</startdate><enddate>20000501</enddate><creator>Lee, SD</creator><creator>Kim, ES</creator><creator>Roe, JH</creator><creator>Kim, J</creator><creator>Kang, SO</creator><creator>Hah, YC</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>7X8</scope></search><sort><creationdate>20000501</creationdate><title>Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov</title><author>Lee, SD ; Kim, ES ; Roe, JH ; Kim, J ; Kang, SO ; Hah, YC</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c502t-e31aca322b21353b9b6b2abf2f196a789d51ef2060d550ea4fa4ba4bb65471d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - cytology</topic><topic>Actinomycetales - isolation & purification</topic><topic>Actinomycetales - physiology</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gold</topic><topic>Korea</topic><topic>Microbiology</topic><topic>Microscopy, Electron, Scanning</topic><topic>Mining</topic><topic>Molecular Sequence Data</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Saccharothrix albidocapillata</topic><topic>Saccharothrix violacea</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, SD</creatorcontrib><creatorcontrib>Kim, ES</creatorcontrib><creatorcontrib>Roe, JH</creatorcontrib><creatorcontrib>Kim, J</creatorcontrib><creatorcontrib>Kang, SO</creatorcontrib><creatorcontrib>Hah, YC</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, SD</au><au>Kim, ES</au><au>Roe, JH</au><au>Kim, J</au><au>Kang, SO</au><au>Hah, YC</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2000-05-01</date><risdate>2000</risdate><volume>50</volume><issue>3</issue><spage>1315</spage><epage>1323</epage><pages>1315-1323</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>SD Lee, ES Kim, JH Roe, J Kim, SO Kang and YC Hah
Department of Microbiology, College of Natural Sciences and Research Center for Molecular Microbiology, Seoul National University, Seoul 151-742, Republic of Korea
The generic position of two isolates from soils inside a gold mine cave in
Kongju, Korea, was determined by 16S rDNA sequencing and chemotaxonomic
characteristics. Phylogenetic analysis indicated that both of the isolates
formed a clade with Lentzea albidocapillata and members of the genus
Saccharothrix of the family Pseudonocardiaceae. The chemical composition of
the isolates and of Lentzea albidocapillata was consistent with that of the
genus Saccharothrix, which is characterized by a type III cell wall (the
meso-isomer of diaminopimelic acid, and galactose and rhamnose as
characteristic whole-cell sugars), MK-9(H(4)) as the major menaquinone, and
a phospholipid type PII pattern (phosphatidylethanolamine as a diagnostic
phospholipid). The combination of morphological features, chemotaxonomic
characters and phylogenetic data supported the proposal that Lentzea
albidocapillata, the only and type strain of the genus Lentzea, should be
transferred to the genus Saccharothrix. On the basis of physiological
properties, cellular fatty acid composition and DNA--DNA hybridization
data, two new species within the genus Saccharothrix are proposed:
Saccharothrix violacea sp. nov., type strain LM 036(T) (=IMSNU 50388(T)),
and Saccharothrix albidocapillata comb. nov., type strain DSM 44073(T)
(=IMSNU 21253(T)).</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>10843077</pmid><doi>10.1099/00207713-50-3-1315</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2000-05, Vol.50 (3), p.1315-1323 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_71167258 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Actinomycetales - classification Actinomycetales - cytology Actinomycetales - isolation & purification Actinomycetales - physiology Bacteriology Biological and medical sciences DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Gold Korea Microbiology Microscopy, Electron, Scanning Mining Molecular Sequence Data Phenotype Phylogeny RNA, Ribosomal, 16S - genetics Saccharothrix albidocapillata Saccharothrix violacea Sequence Analysis, DNA Soil Microbiology Systematics |
| title | Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov |
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