Analysis and interpretation of ligand-DNA binding isotherms
Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are...
Gespeichert in:
Veröffentlicht in: | Methods in Enzymology 2001, Vol.340, p.3-22 |
---|---|
1. Verfasser: | |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 22 |
---|---|
container_issue | |
container_start_page | 3 |
container_title | Methods in Enzymology |
container_volume | 340 |
creator | Chaires, Jonathan B |
description | Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data. |
doi_str_mv | 10.1016/S0076-6879(01)40415-0 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_miscellaneous_71068200</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0076687901404150</els_id><sourcerecordid>71068200</sourcerecordid><originalsourceid>FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</originalsourceid><addsrcrecordid>eNo9kMtOwzAQRS0eog_4BFBWCBaBmTixHbFAVXlKFSzo3nLsSTFKkxKnSP17-oLVLO7R1Z3D2DnCDQKK2w8AKWKhZH4FeJ1CilkMB6yPWSZjmSt1yAaACaokSTE_Yv1_vscGIXwBJFLleMJ6iGmeqkz02d2oNtUq-BCZ2kW-7qhdtNSZzjd11JRR5WfrIH54G0WFr52vZ5EPTfdJ7TycsuPSVIHO9nfIpk-P0_FLPHl_fh2PJrHlmHWxUdxmVJCxtrDKCZRgeC4FF1SKgqe5dbJAZ5AniUXK8oIynqbgSgIngA_Z5a520TbfSwqdnvtgqapMTc0yaIkgVAIb8GIPLos5Ob1o_dy0K_337Rq43wG0XvvjqdXBeqotOd-S7bRrvEbQG9l6K1tv5GlAvZWtgf8Cb3xuAQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>71068200</pqid></control><display><type>article</type><title>Analysis and interpretation of ligand-DNA binding isotherms</title><source>MEDLINE</source><source>ScienceDirect eBooks</source><source>Access via ScienceDirect (Elsevier)</source><creator>Chaires, Jonathan B</creator><creatorcontrib>Chaires, Jonathan B</creatorcontrib><description>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</description><identifier>ISSN: 0076-6879</identifier><identifier>ISBN: 0121822419</identifier><identifier>ISBN: 9780121822415</identifier><identifier>EISSN: 1557-7988</identifier><identifier>DOI: 10.1016/S0076-6879(01)40415-0</identifier><identifier>PMID: 11494856</identifier><language>eng</language><publisher>United States: Elsevier Science & Technology</publisher><subject>Animals ; Base Sequence ; Biophysical Phenomena ; Biophysics ; Cattle ; Daunorubicin - chemistry ; Daunorubicin - metabolism ; DNA - chemistry ; DNA - metabolism ; DNA Adducts - chemistry ; DNA Adducts - metabolism ; In Vitro Techniques ; Kinetics ; Ligands ; Models, Biological ; Thermodynamics</subject><ispartof>Methods in Enzymology, 2001, Vol.340, p.3-22</ispartof><rights>2001</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0076687901404150$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,779,780,784,793,3459,3550,4024,11288,27923,27924,27925,45810,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11494856$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chaires, Jonathan B</creatorcontrib><title>Analysis and interpretation of ligand-DNA binding isotherms</title><title>Methods in Enzymology</title><addtitle>Methods Enzymol</addtitle><description>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Biophysical Phenomena</subject><subject>Biophysics</subject><subject>Cattle</subject><subject>Daunorubicin - chemistry</subject><subject>Daunorubicin - metabolism</subject><subject>DNA - chemistry</subject><subject>DNA - metabolism</subject><subject>DNA Adducts - chemistry</subject><subject>DNA Adducts - metabolism</subject><subject>In Vitro Techniques</subject><subject>Kinetics</subject><subject>Ligands</subject><subject>Models, Biological</subject><subject>Thermodynamics</subject><issn>0076-6879</issn><issn>1557-7988</issn><isbn>0121822419</isbn><isbn>9780121822415</isbn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kMtOwzAQRS0eog_4BFBWCBaBmTixHbFAVXlKFSzo3nLsSTFKkxKnSP17-oLVLO7R1Z3D2DnCDQKK2w8AKWKhZH4FeJ1CilkMB6yPWSZjmSt1yAaACaokSTE_Yv1_vscGIXwBJFLleMJ6iGmeqkz02d2oNtUq-BCZ2kW-7qhdtNSZzjd11JRR5WfrIH54G0WFr52vZ5EPTfdJ7TycsuPSVIHO9nfIpk-P0_FLPHl_fh2PJrHlmHWxUdxmVJCxtrDKCZRgeC4FF1SKgqe5dbJAZ5AniUXK8oIynqbgSgIngA_Z5a520TbfSwqdnvtgqapMTc0yaIkgVAIb8GIPLos5Ob1o_dy0K_337Rq43wG0XvvjqdXBeqotOd-S7bRrvEbQG9l6K1tv5GlAvZWtgf8Cb3xuAQ</recordid><startdate>2001</startdate><enddate>2001</enddate><creator>Chaires, Jonathan B</creator><general>Elsevier Science & Technology</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>2001</creationdate><title>Analysis and interpretation of ligand-DNA binding isotherms</title><author>Chaires, Jonathan B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Biophysical Phenomena</topic><topic>Biophysics</topic><topic>Cattle</topic><topic>Daunorubicin - chemistry</topic><topic>Daunorubicin - metabolism</topic><topic>DNA - chemistry</topic><topic>DNA - metabolism</topic><topic>DNA Adducts - chemistry</topic><topic>DNA Adducts - metabolism</topic><topic>In Vitro Techniques</topic><topic>Kinetics</topic><topic>Ligands</topic><topic>Models, Biological</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chaires, Jonathan B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>Methods in Enzymology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chaires, Jonathan B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis and interpretation of ligand-DNA binding isotherms</atitle><jtitle>Methods in Enzymology</jtitle><addtitle>Methods Enzymol</addtitle><date>2001</date><risdate>2001</risdate><volume>340</volume><spage>3</spage><epage>22</epage><pages>3-22</pages><issn>0076-6879</issn><eissn>1557-7988</eissn><isbn>0121822419</isbn><isbn>9780121822415</isbn><abstract>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</abstract><cop>United States</cop><pub>Elsevier Science & Technology</pub><pmid>11494856</pmid><doi>10.1016/S0076-6879(01)40415-0</doi><tpages>20</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0076-6879 |
ispartof | Methods in Enzymology, 2001, Vol.340, p.3-22 |
issn | 0076-6879 1557-7988 |
language | eng |
recordid | cdi_proquest_miscellaneous_71068200 |
source | MEDLINE; ScienceDirect eBooks; Access via ScienceDirect (Elsevier) |
subjects | Animals Base Sequence Biophysical Phenomena Biophysics Cattle Daunorubicin - chemistry Daunorubicin - metabolism DNA - chemistry DNA - metabolism DNA Adducts - chemistry DNA Adducts - metabolism In Vitro Techniques Kinetics Ligands Models, Biological Thermodynamics |
title | Analysis and interpretation of ligand-DNA binding isotherms |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T18%3A22%3A58IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Analysis%20and%20interpretation%20of%20ligand-DNA%20binding%20isotherms&rft.jtitle=Methods%20in%20Enzymology&rft.au=Chaires,%20Jonathan%20B&rft.date=2001&rft.volume=340&rft.spage=3&rft.epage=22&rft.pages=3-22&rft.issn=0076-6879&rft.eissn=1557-7988&rft.isbn=0121822419&rft.isbn_list=9780121822415&rft_id=info:doi/10.1016/S0076-6879(01)40415-0&rft_dat=%3Cproquest_pubme%3E71068200%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=71068200&rft_id=info:pmid/11494856&rft_els_id=S0076687901404150&rfr_iscdi=true |