Analysis and interpretation of ligand-DNA binding isotherms

Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Methods in Enzymology 2001, Vol.340, p.3-22
1. Verfasser: Chaires, Jonathan B
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 22
container_issue
container_start_page 3
container_title Methods in Enzymology
container_volume 340
creator Chaires, Jonathan B
description Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.
doi_str_mv 10.1016/S0076-6879(01)40415-0
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_miscellaneous_71068200</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0076687901404150</els_id><sourcerecordid>71068200</sourcerecordid><originalsourceid>FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</originalsourceid><addsrcrecordid>eNo9kMtOwzAQRS0eog_4BFBWCBaBmTixHbFAVXlKFSzo3nLsSTFKkxKnSP17-oLVLO7R1Z3D2DnCDQKK2w8AKWKhZH4FeJ1CilkMB6yPWSZjmSt1yAaACaokSTE_Yv1_vscGIXwBJFLleMJ6iGmeqkz02d2oNtUq-BCZ2kW-7qhdtNSZzjd11JRR5WfrIH54G0WFr52vZ5EPTfdJ7TycsuPSVIHO9nfIpk-P0_FLPHl_fh2PJrHlmHWxUdxmVJCxtrDKCZRgeC4FF1SKgqe5dbJAZ5AniUXK8oIynqbgSgIngA_Z5a520TbfSwqdnvtgqapMTc0yaIkgVAIb8GIPLos5Ob1o_dy0K_337Rq43wG0XvvjqdXBeqotOd-S7bRrvEbQG9l6K1tv5GlAvZWtgf8Cb3xuAQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>71068200</pqid></control><display><type>article</type><title>Analysis and interpretation of ligand-DNA binding isotherms</title><source>MEDLINE</source><source>ScienceDirect eBooks</source><source>Access via ScienceDirect (Elsevier)</source><creator>Chaires, Jonathan B</creator><creatorcontrib>Chaires, Jonathan B</creatorcontrib><description>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</description><identifier>ISSN: 0076-6879</identifier><identifier>ISBN: 0121822419</identifier><identifier>ISBN: 9780121822415</identifier><identifier>EISSN: 1557-7988</identifier><identifier>DOI: 10.1016/S0076-6879(01)40415-0</identifier><identifier>PMID: 11494856</identifier><language>eng</language><publisher>United States: Elsevier Science &amp; Technology</publisher><subject>Animals ; Base Sequence ; Biophysical Phenomena ; Biophysics ; Cattle ; Daunorubicin - chemistry ; Daunorubicin - metabolism ; DNA - chemistry ; DNA - metabolism ; DNA Adducts - chemistry ; DNA Adducts - metabolism ; In Vitro Techniques ; Kinetics ; Ligands ; Models, Biological ; Thermodynamics</subject><ispartof>Methods in Enzymology, 2001, Vol.340, p.3-22</ispartof><rights>2001</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0076687901404150$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,779,780,784,793,3459,3550,4024,11288,27923,27924,27925,45810,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11494856$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chaires, Jonathan B</creatorcontrib><title>Analysis and interpretation of ligand-DNA binding isotherms</title><title>Methods in Enzymology</title><addtitle>Methods Enzymol</addtitle><description>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Biophysical Phenomena</subject><subject>Biophysics</subject><subject>Cattle</subject><subject>Daunorubicin - chemistry</subject><subject>Daunorubicin - metabolism</subject><subject>DNA - chemistry</subject><subject>DNA - metabolism</subject><subject>DNA Adducts - chemistry</subject><subject>DNA Adducts - metabolism</subject><subject>In Vitro Techniques</subject><subject>Kinetics</subject><subject>Ligands</subject><subject>Models, Biological</subject><subject>Thermodynamics</subject><issn>0076-6879</issn><issn>1557-7988</issn><isbn>0121822419</isbn><isbn>9780121822415</isbn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kMtOwzAQRS0eog_4BFBWCBaBmTixHbFAVXlKFSzo3nLsSTFKkxKnSP17-oLVLO7R1Z3D2DnCDQKK2w8AKWKhZH4FeJ1CilkMB6yPWSZjmSt1yAaACaokSTE_Yv1_vscGIXwBJFLleMJ6iGmeqkz02d2oNtUq-BCZ2kW-7qhdtNSZzjd11JRR5WfrIH54G0WFr52vZ5EPTfdJ7TycsuPSVIHO9nfIpk-P0_FLPHl_fh2PJrHlmHWxUdxmVJCxtrDKCZRgeC4FF1SKgqe5dbJAZ5AniUXK8oIynqbgSgIngA_Z5a520TbfSwqdnvtgqapMTc0yaIkgVAIb8GIPLos5Ob1o_dy0K_337Rq43wG0XvvjqdXBeqotOd-S7bRrvEbQG9l6K1tv5GlAvZWtgf8Cb3xuAQ</recordid><startdate>2001</startdate><enddate>2001</enddate><creator>Chaires, Jonathan B</creator><general>Elsevier Science &amp; Technology</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>2001</creationdate><title>Analysis and interpretation of ligand-DNA binding isotherms</title><author>Chaires, Jonathan B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-a83c5ebeaccbc8d6170a397636ef6b349cd7b1da1322c1e59be53440dfe0d603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Biophysical Phenomena</topic><topic>Biophysics</topic><topic>Cattle</topic><topic>Daunorubicin - chemistry</topic><topic>Daunorubicin - metabolism</topic><topic>DNA - chemistry</topic><topic>DNA - metabolism</topic><topic>DNA Adducts - chemistry</topic><topic>DNA Adducts - metabolism</topic><topic>In Vitro Techniques</topic><topic>Kinetics</topic><topic>Ligands</topic><topic>Models, Biological</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chaires, Jonathan B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>Methods in Enzymology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chaires, Jonathan B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis and interpretation of ligand-DNA binding isotherms</atitle><jtitle>Methods in Enzymology</jtitle><addtitle>Methods Enzymol</addtitle><date>2001</date><risdate>2001</risdate><volume>340</volume><spage>3</spage><epage>22</epage><pages>3-22</pages><issn>0076-6879</issn><eissn>1557-7988</eissn><isbn>0121822419</isbn><isbn>9780121822415</isbn><abstract>Binding studies provide information of fundamental and central importance for the complete understanding of ligand-DNA interactions. Studies of ligand binding to long natural DNA samples, to synthetic deoxypolynucleotides of simple repeating sequence, and to oligonucleotides of defined sequence are all needed to begin to understand the interaction in detail. Binding studies provide entry into the thermodynamics of the DNA interactions, which in turn provides great insight into the molecular forces that drive the binding process. This chapter summarizes both model-dependent and -independent approaches for the analysis and interpretation of binding isotherms, and should serve as a concise guide for handling experimental data.</abstract><cop>United States</cop><pub>Elsevier Science &amp; Technology</pub><pmid>11494856</pmid><doi>10.1016/S0076-6879(01)40415-0</doi><tpages>20</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0076-6879
ispartof Methods in Enzymology, 2001, Vol.340, p.3-22
issn 0076-6879
1557-7988
language eng
recordid cdi_proquest_miscellaneous_71068200
source MEDLINE; ScienceDirect eBooks; Access via ScienceDirect (Elsevier)
subjects Animals
Base Sequence
Biophysical Phenomena
Biophysics
Cattle
Daunorubicin - chemistry
Daunorubicin - metabolism
DNA - chemistry
DNA - metabolism
DNA Adducts - chemistry
DNA Adducts - metabolism
In Vitro Techniques
Kinetics
Ligands
Models, Biological
Thermodynamics
title Analysis and interpretation of ligand-DNA binding isotherms
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T18%3A22%3A58IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Analysis%20and%20interpretation%20of%20ligand-DNA%20binding%20isotherms&rft.jtitle=Methods%20in%20Enzymology&rft.au=Chaires,%20Jonathan%20B&rft.date=2001&rft.volume=340&rft.spage=3&rft.epage=22&rft.pages=3-22&rft.issn=0076-6879&rft.eissn=1557-7988&rft.isbn=0121822419&rft.isbn_list=9780121822415&rft_id=info:doi/10.1016/S0076-6879(01)40415-0&rft_dat=%3Cproquest_pubme%3E71068200%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=71068200&rft_id=info:pmid/11494856&rft_els_id=S0076687901404150&rfr_iscdi=true