Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea
JH Yoon, SH Choi, KC Lee, YH Kho, KH Kang and YH Park Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea A halophilic Gram-negative bacterial strain, SW32(T), which was isolated from a sample from the Yellow Sea of Korea, was subjected to a polyphasic...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2001-05, Vol.51 (3), p.1171-1177 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Yoon, JH Choi, SH Lee, KC Kho, YH Kang, KH Park, YH |
| description | JH Yoon, SH Choi, KC Lee, YH Kho, KH Kang and YH Park
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea
A halophilic Gram-negative bacterial strain, SW32(T), which was isolated
from a sample from the Yellow Sea of Korea, was subjected to a polyphasic
taxonomic study. This organism grew optimally in the presence of 0.5--12%
NaCl. On the basis of phenotypic and phylogenetic data, strain SW32(T)
appeared to be a member of the genus Halomonas. Strain SW32(T) formed a
distinct evolutionary lineage within the phylogenetic clade comprising
Halomonas species and the genera Zymobacter and Carnimonas. The 16S rDNA
sequence of strain SW32(T) contains 19 signature characteristics of the
genus Halomonas and the family Halomonadaceae. Strain SW32(T) possessed a
single polar flagellum, ubiquinone-9 as the predominant respiratory
lipoquinone and C(18:1), C(16:0) and C(16:1) omega7c and/or iso-C(15:0) 2OH
as the major fatty acids. The DNA G+C content was 59 mol%. Levels of 16S
rDNA similarity between strain SW32(T) and the type strains of all validly
described Halomonas species were 92.0--93.8%. Strain SW32(T) exhibited 16S
rDNA similarity values of 92.7% to Zymobacter palmae IAM 14233(T) and 91.6%
to Carnimonas nigrificans CECT 4437(T). These data indicate that strain
SW32(T) was related enough to members of the genus Halomonas to be placed
as a new species within that genus. Therefore the name Halomonas
marisflavae sp. nov. is proposed for strain SW32(T). The type strain of the
new species is strain SW32(T) (=KCCM 80003(T)=JCM 10873(T)). |
| doi_str_mv | 10.1099/00207713-51-3-1171 |
| format | Article |
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Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea
A halophilic Gram-negative bacterial strain, SW32(T), which was isolated
from a sample from the Yellow Sea of Korea, was subjected to a polyphasic
taxonomic study. This organism grew optimally in the presence of 0.5--12%
NaCl. On the basis of phenotypic and phylogenetic data, strain SW32(T)
appeared to be a member of the genus Halomonas. Strain SW32(T) formed a
distinct evolutionary lineage within the phylogenetic clade comprising
Halomonas species and the genera Zymobacter and Carnimonas. The 16S rDNA
sequence of strain SW32(T) contains 19 signature characteristics of the
genus Halomonas and the family Halomonadaceae. Strain SW32(T) possessed a
single polar flagellum, ubiquinone-9 as the predominant respiratory
lipoquinone and C(18:1), C(16:0) and C(16:1) omega7c and/or iso-C(15:0) 2OH
as the major fatty acids. The DNA G+C content was 59 mol%. Levels of 16S
rDNA similarity between strain SW32(T) and the type strains of all validly
described Halomonas species were 92.0--93.8%. Strain SW32(T) exhibited 16S
rDNA similarity values of 92.7% to Zymobacter palmae IAM 14233(T) and 91.6%
to Carnimonas nigrificans CECT 4437(T). These data indicate that strain
SW32(T) was related enough to members of the genus Halomonas to be placed
as a new species within that genus. Therefore the name Halomonas
marisflavae sp. nov. is proposed for strain SW32(T). The type strain of the
new species is strain SW32(T) (=KCCM 80003(T)=JCM 10873(T)).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/00207713-51-3-1171</identifier><identifier>PMID: 11411685</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Animal, plant and microbial ecology ; Bacteriology ; Biological and medical sciences ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Halomonas - classification ; Halomonas - genetics ; Halomonas - isolation & purification ; Halomonas - ultrastructure ; Halomonas marisflavae ; Korea ; Microbial ecology ; Microbiology ; Microscopy, Electron ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Seawater - microbiology ; Systematics ; Ubiquinone - metabolism ; Various environments (extraatmospheric space, air, water) ; Yellow Sea</subject><ispartof>International journal of systematic and evolutionary microbiology, 2001-05, Vol.51 (3), p.1171-1177</ispartof><rights>2002 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c437t-b57f2171eb676c996cc53467925ccd321dc9815ad750b6d76a2268c58b8c8ec13</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>309,310,314,776,780,785,786,3732,3733,23910,23911,25119,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14161512$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11411685$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yoon, JH</creatorcontrib><creatorcontrib>Choi, SH</creatorcontrib><creatorcontrib>Lee, KC</creatorcontrib><creatorcontrib>Kho, YH</creatorcontrib><creatorcontrib>Kang, KH</creatorcontrib><creatorcontrib>Park, YH</creatorcontrib><title>Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>JH Yoon, SH Choi, KC Lee, YH Kho, KH Kang and YH Park
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea
A halophilic Gram-negative bacterial strain, SW32(T), which was isolated
from a sample from the Yellow Sea of Korea, was subjected to a polyphasic
taxonomic study. This organism grew optimally in the presence of 0.5--12%
NaCl. On the basis of phenotypic and phylogenetic data, strain SW32(T)
appeared to be a member of the genus Halomonas. Strain SW32(T) formed a
distinct evolutionary lineage within the phylogenetic clade comprising
Halomonas species and the genera Zymobacter and Carnimonas. The 16S rDNA
sequence of strain SW32(T) contains 19 signature characteristics of the
genus Halomonas and the family Halomonadaceae. Strain SW32(T) possessed a
single polar flagellum, ubiquinone-9 as the predominant respiratory
lipoquinone and C(18:1), C(16:0) and C(16:1) omega7c and/or iso-C(15:0) 2OH
as the major fatty acids. The DNA G+C content was 59 mol%. Levels of 16S
rDNA similarity between strain SW32(T) and the type strains of all validly
described Halomonas species were 92.0--93.8%. Strain SW32(T) exhibited 16S
rDNA similarity values of 92.7% to Zymobacter palmae IAM 14233(T) and 91.6%
to Carnimonas nigrificans CECT 4437(T). These data indicate that strain
SW32(T) was related enough to members of the genus Halomonas to be placed
as a new species within that genus. Therefore the name Halomonas
marisflavae sp. nov. is proposed for strain SW32(T). The type strain of the
new species is strain SW32(T) (=KCCM 80003(T)=JCM 10873(T)).</description><subject>Animal, plant and microbial ecology</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Halomonas - classification</subject><subject>Halomonas - genetics</subject><subject>Halomonas - isolation & purification</subject><subject>Halomonas - ultrastructure</subject><subject>Halomonas marisflavae</subject><subject>Korea</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Microscopy, Electron</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Seawater - microbiology</subject><subject>Systematics</subject><subject>Ubiquinone - metabolism</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Yellow Sea</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1v1DAQhq2qqC2lf6AH5EsRB7J47PgjR1QBRVTiAByQkKyJ4zSuknixs63493i12-6R04xGz8y8egi5BLYC1jTvGeNMaxCVhEpUABqOyBnUSlWSifr4uefqlLzM-Z6xMmDshJwC1ADKyDPy-wbHOMUZM50whdyP-ICe5vWKzvFh9Y4iHQqxHsIYHG3RLT6FzURDjiMuvqN9ihNdBk9_-XGMj_S7Rxpm-jUmj6_Iix7H7C_29Zz8_PTxx_VNdfvt85frD7eVq4Veqlbqnpf0vlVauaZRzklRK91w6VwnOHSuMSCx05K1qtMKOVfGSdMaZ7wDcU7e7O6uU_yz8XmxU8iu5MHZx022mjWcG8X_C4JhRnAtCsh3oEsx5-R7u06hCPprgdmtfPsk30qwwm7ll6XX--ubdvLdYWVvuwBXewCzw7FPOLuQD1wNCiRsY77dcUO4Gx5D8vbOz1MoWdoQbbjPh5__AHahmNI</recordid><startdate>20010501</startdate><enddate>20010501</enddate><creator>Yoon, JH</creator><creator>Choi, SH</creator><creator>Lee, KC</creator><creator>Kho, YH</creator><creator>Kang, KH</creator><creator>Park, YH</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>7X8</scope></search><sort><creationdate>20010501</creationdate><title>Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea</title><author>Yoon, JH ; Choi, SH ; Lee, KC ; Kho, YH ; Kang, KH ; Park, YH</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c437t-b57f2171eb676c996cc53467925ccd321dc9815ad750b6d76a2268c58b8c8ec13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Halomonas - classification</topic><topic>Halomonas - genetics</topic><topic>Halomonas - isolation & purification</topic><topic>Halomonas - ultrastructure</topic><topic>Halomonas marisflavae</topic><topic>Korea</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Microscopy, Electron</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Seawater - microbiology</topic><topic>Systematics</topic><topic>Ubiquinone - metabolism</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Yellow Sea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yoon, JH</creatorcontrib><creatorcontrib>Choi, SH</creatorcontrib><creatorcontrib>Lee, KC</creatorcontrib><creatorcontrib>Kho, YH</creatorcontrib><creatorcontrib>Kang, KH</creatorcontrib><creatorcontrib>Park, YH</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yoon, JH</au><au>Choi, SH</au><au>Lee, KC</au><au>Kho, YH</au><au>Kang, KH</au><au>Park, YH</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2001-05-01</date><risdate>2001</risdate><volume>51</volume><issue>3</issue><spage>1171</spage><epage>1177</epage><pages>1171-1177</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>JH Yoon, SH Choi, KC Lee, YH Kho, KH Kang and YH Park
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea
A halophilic Gram-negative bacterial strain, SW32(T), which was isolated
from a sample from the Yellow Sea of Korea, was subjected to a polyphasic
taxonomic study. This organism grew optimally in the presence of 0.5--12%
NaCl. On the basis of phenotypic and phylogenetic data, strain SW32(T)
appeared to be a member of the genus Halomonas. Strain SW32(T) formed a
distinct evolutionary lineage within the phylogenetic clade comprising
Halomonas species and the genera Zymobacter and Carnimonas. The 16S rDNA
sequence of strain SW32(T) contains 19 signature characteristics of the
genus Halomonas and the family Halomonadaceae. Strain SW32(T) possessed a
single polar flagellum, ubiquinone-9 as the predominant respiratory
lipoquinone and C(18:1), C(16:0) and C(16:1) omega7c and/or iso-C(15:0) 2OH
as the major fatty acids. The DNA G+C content was 59 mol%. Levels of 16S
rDNA similarity between strain SW32(T) and the type strains of all validly
described Halomonas species were 92.0--93.8%. Strain SW32(T) exhibited 16S
rDNA similarity values of 92.7% to Zymobacter palmae IAM 14233(T) and 91.6%
to Carnimonas nigrificans CECT 4437(T). These data indicate that strain
SW32(T) was related enough to members of the genus Halomonas to be placed
as a new species within that genus. Therefore the name Halomonas
marisflavae sp. nov. is proposed for strain SW32(T). The type strain of the
new species is strain SW32(T) (=KCCM 80003(T)=JCM 10873(T)).</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>11411685</pmid><doi>10.1099/00207713-51-3-1171</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2001-05, Vol.51 (3), p.1171-1177 |
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| language | eng |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Animal, plant and microbial ecology Bacteriology Biological and medical sciences DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Halomonas - classification Halomonas - genetics Halomonas - isolation & purification Halomonas - ultrastructure Halomonas marisflavae Korea Microbial ecology Microbiology Microscopy, Electron Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S - genetics rRNA 16S Seawater - microbiology Systematics Ubiquinone - metabolism Various environments (extraatmospheric space, air, water) Yellow Sea |
| title | Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea |
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