Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China
The genetic variability of HRSV in China was studied using nucleotide sequencing of the hypervariable C-terminal region of the G protein gene and phylogenetic analysis on 80 isolates obtained from three children's hospitals over a period of three epidemic seasons, 1990/1991, 2000/2001, and 2003...
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| Veröffentlicht in: | Archives of virology 2007-08, Vol.152 (8), p.1425-1434 |
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| creator | Zhang, Y Xu, W Shen, K Xie, Z Sun, L Lu, Q Liu, C Liang, G Beeler, J. A Anderson, L. J |
| description | The genetic variability of HRSV in China was studied using nucleotide sequencing of the hypervariable C-terminal region of the G protein gene and phylogenetic analysis on 80 isolates obtained from three children's hospitals over a period of three epidemic seasons, 1990/1991, 2000/2001, and 2003/2004. The results showed that 76/80 of these isolates belonged to group A and 4/80 belonged to group B. Phylogenetic analysis revealed that most of the group A isolates were genotype GA2 (74/76 isolates), and the other two isolates were GA3 and GA5. All group B isolates clustered into genotype GB3. There was substantial variation among the GA2 isolates, with nucleotide sequence and amino acid homologies ranging from 88.1-100% and 78.4-100%, respectively, in the hypervariable C-terminal region of the G protein gene. One group B virus, HRSV/Beijing/B/04/11, contained a 60-nucleotide duplication in the C-terminal region of the G protein, which was similar to what has been reported previously for isolates in several countries. This is the first report on the genetic diversity of human respiratory syncytial virus isolated during epidemic periods from children in China. These data provided a preliminary evaluation of patterns of circulation and the genetic diversity of isolates associated with HRSV epidemics within China. |
| doi_str_mv | 10.1007/s00705-007-0984-3 |
| format | Article |
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A ; Anderson, L. J</creator><creatorcontrib>Zhang, Y ; Xu, W ; Shen, K ; Xie, Z ; Sun, L ; Lu, Q ; Liu, C ; Liang, G ; Beeler, J. A ; Anderson, L. J</creatorcontrib><description>The genetic variability of HRSV in China was studied using nucleotide sequencing of the hypervariable C-terminal region of the G protein gene and phylogenetic analysis on 80 isolates obtained from three children's hospitals over a period of three epidemic seasons, 1990/1991, 2000/2001, and 2003/2004. The results showed that 76/80 of these isolates belonged to group A and 4/80 belonged to group B. Phylogenetic analysis revealed that most of the group A isolates were genotype GA2 (74/76 isolates), and the other two isolates were GA3 and GA5. All group B isolates clustered into genotype GB3. There was substantial variation among the GA2 isolates, with nucleotide sequence and amino acid homologies ranging from 88.1-100% and 78.4-100%, respectively, in the hypervariable C-terminal region of the G protein gene. One group B virus, HRSV/Beijing/B/04/11, contained a 60-nucleotide duplication in the C-terminal region of the G protein, which was similar to what has been reported previously for isolates in several countries. This is the first report on the genetic diversity of human respiratory syncytial virus isolated during epidemic periods from children in China. These data provided a preliminary evaluation of patterns of circulation and the genetic diversity of isolates associated with HRSV epidemics within China.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-007-0984-3</identifier><identifier>PMID: 17510775</identifier><language>eng</language><publisher>Wien: Vienna : Springer-Verlag</publisher><subject>Biological and medical sciences ; Cell Line ; Child, Preschool ; China - epidemiology ; Disease control ; Disease Outbreaks ; Disease prevention ; Epidemics ; Fundamental and applied biological sciences. Psychology ; Genetic diversity ; Genetic Variation ; Genotype ; Genotype & phenotype ; Human respiratory syncytial virus ; Humans ; Infant ; Infant, Newborn ; Infections ; Microbiology ; Miscellaneous ; Molecular Epidemiology ; Molecular Sequence Data ; Monoclonal antibodies ; Nasopharynx - virology ; Phylogenetics ; Phylogeny ; Pneumonia ; Polymerase chain reaction ; Proteins ; Respiratory syncytial virus ; Respiratory Syncytial Virus Infections - epidemiology ; Respiratory Syncytial Virus Infections - virology ; Respiratory Syncytial Virus, Human - classification ; Respiratory Syncytial Virus, Human - genetics ; Respiratory Syncytial Virus, Human - isolation & purification ; Respiratory Tract Infections - epidemiology ; Respiratory Tract Infections - virology ; Sequence Analysis, DNA ; Viral Fusion Proteins - genetics ; Virology ; Viruses</subject><ispartof>Archives of virology, 2007-08, Vol.152 (8), p.1425-1434</ispartof><rights>2007 INIST-CNRS</rights><rights>Springer-Verlag 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c411t-8b4722bb0f5ab105f6a0d90642dc7f4fe38dc0ac05bd68165eee5b1b1dbabb123</citedby><cites>FETCH-LOGICAL-c411t-8b4722bb0f5ab105f6a0d90642dc7f4fe38dc0ac05bd68165eee5b1b1dbabb123</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18951043$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17510775$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Y</creatorcontrib><creatorcontrib>Xu, W</creatorcontrib><creatorcontrib>Shen, K</creatorcontrib><creatorcontrib>Xie, Z</creatorcontrib><creatorcontrib>Sun, L</creatorcontrib><creatorcontrib>Lu, Q</creatorcontrib><creatorcontrib>Liu, C</creatorcontrib><creatorcontrib>Liang, G</creatorcontrib><creatorcontrib>Beeler, J. A</creatorcontrib><creatorcontrib>Anderson, L. J</creatorcontrib><title>Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><description>The genetic variability of HRSV in China was studied using nucleotide sequencing of the hypervariable C-terminal region of the G protein gene and phylogenetic analysis on 80 isolates obtained from three children's hospitals over a period of three epidemic seasons, 1990/1991, 2000/2001, and 2003/2004. The results showed that 76/80 of these isolates belonged to group A and 4/80 belonged to group B. Phylogenetic analysis revealed that most of the group A isolates were genotype GA2 (74/76 isolates), and the other two isolates were GA3 and GA5. All group B isolates clustered into genotype GB3. There was substantial variation among the GA2 isolates, with nucleotide sequence and amino acid homologies ranging from 88.1-100% and 78.4-100%, respectively, in the hypervariable C-terminal region of the G protein gene. One group B virus, HRSV/Beijing/B/04/11, contained a 60-nucleotide duplication in the C-terminal region of the G protein, which was similar to what has been reported previously for isolates in several countries. This is the first report on the genetic diversity of human respiratory syncytial virus isolated during epidemic periods from children in China. These data provided a preliminary evaluation of patterns of circulation and the genetic diversity of isolates associated with HRSV epidemics within China.</description><subject>Biological and medical sciences</subject><subject>Cell Line</subject><subject>Child, Preschool</subject><subject>China - epidemiology</subject><subject>Disease control</subject><subject>Disease Outbreaks</subject><subject>Disease prevention</subject><subject>Epidemics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Human respiratory syncytial virus</subject><subject>Humans</subject><subject>Infant</subject><subject>Infant, Newborn</subject><subject>Infections</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Epidemiology</subject><subject>Molecular Sequence Data</subject><subject>Monoclonal antibodies</subject><subject>Nasopharynx - virology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pneumonia</subject><subject>Polymerase chain reaction</subject><subject>Proteins</subject><subject>Respiratory syncytial virus</subject><subject>Respiratory Syncytial Virus Infections - epidemiology</subject><subject>Respiratory Syncytial Virus Infections - virology</subject><subject>Respiratory Syncytial Virus, Human - classification</subject><subject>Respiratory Syncytial Virus, Human - genetics</subject><subject>Respiratory Syncytial Virus, Human - isolation & purification</subject><subject>Respiratory Tract Infections - epidemiology</subject><subject>Respiratory Tract Infections - virology</subject><subject>Sequence Analysis, DNA</subject><subject>Viral Fusion Proteins - genetics</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkcGOFCEQhonRuOPqA3hRYqK31qKBhj6uE11NNvGgeyZAwy5rN4zQPUm_vXRmkk28eClI1Vd_VeVH6DWBjwRAfCo1AG9qbKCXrKFP0I4w2jZS9PIp2gEF1sgO5AV6UcoDQE1Q_hxdEMEJCMF36Pe1i24OFh91DtqEMcwrTh7f5bQc8BXWccCf8f0y6YizK4eQ9Zzyissa7ToHPeJjyEtxBYeSRj27AfucJkzxIadjiHarRLy_D1G_RM-8Hot7dX4v0e3XL7_235qbH9ff91c3jWWEzI00TLStMeC5NgS47zQMPXSsHazwzDsqBwvaAjdDJ0nHnXPcEEMGo40hLb1EH066dYU_iyuzmkKxbhx1dGkpSoDoOsK6_4KkF1y2nFXw3T_gQ1pyrEeotg4UhLa0QuQE2ZxKyc6rQw6TzqsioDa_1MkvtX03v9TW8-YsvJjJDY8dZ4Mq8P4M6GL16LOONpRHTvYVZJvQ2xPndVL6Llfm9mcLhNZhfdvV9f4CbSKnEw</recordid><startdate>20070801</startdate><enddate>20070801</enddate><creator>Zhang, Y</creator><creator>Xu, W</creator><creator>Shen, K</creator><creator>Xie, Z</creator><creator>Sun, L</creator><creator>Lu, Q</creator><creator>Liu, C</creator><creator>Liang, G</creator><creator>Beeler, J. 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A</au><au>Anderson, L. J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China</atitle><jtitle>Archives of virology</jtitle><addtitle>Arch Virol</addtitle><date>2007-08-01</date><risdate>2007</risdate><volume>152</volume><issue>8</issue><spage>1425</spage><epage>1434</epage><pages>1425-1434</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The genetic variability of HRSV in China was studied using nucleotide sequencing of the hypervariable C-terminal region of the G protein gene and phylogenetic analysis on 80 isolates obtained from three children's hospitals over a period of three epidemic seasons, 1990/1991, 2000/2001, and 2003/2004. The results showed that 76/80 of these isolates belonged to group A and 4/80 belonged to group B. Phylogenetic analysis revealed that most of the group A isolates were genotype GA2 (74/76 isolates), and the other two isolates were GA3 and GA5. All group B isolates clustered into genotype GB3. There was substantial variation among the GA2 isolates, with nucleotide sequence and amino acid homologies ranging from 88.1-100% and 78.4-100%, respectively, in the hypervariable C-terminal region of the G protein gene. One group B virus, HRSV/Beijing/B/04/11, contained a 60-nucleotide duplication in the C-terminal region of the G protein, which was similar to what has been reported previously for isolates in several countries. This is the first report on the genetic diversity of human respiratory syncytial virus isolated during epidemic periods from children in China. These data provided a preliminary evaluation of patterns of circulation and the genetic diversity of isolates associated with HRSV epidemics within China.</abstract><cop>Wien</cop><cop>New York, NY</cop><pub>Vienna : Springer-Verlag</pub><pmid>17510775</pmid><doi>10.1007/s00705-007-0984-3</doi><tpages>10</tpages></addata></record> |
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| subjects | Biological and medical sciences Cell Line Child, Preschool China - epidemiology Disease control Disease Outbreaks Disease prevention Epidemics Fundamental and applied biological sciences. Psychology Genetic diversity Genetic Variation Genotype Genotype & phenotype Human respiratory syncytial virus Humans Infant Infant, Newborn Infections Microbiology Miscellaneous Molecular Epidemiology Molecular Sequence Data Monoclonal antibodies Nasopharynx - virology Phylogenetics Phylogeny Pneumonia Polymerase chain reaction Proteins Respiratory syncytial virus Respiratory Syncytial Virus Infections - epidemiology Respiratory Syncytial Virus Infections - virology Respiratory Syncytial Virus, Human - classification Respiratory Syncytial Virus, Human - genetics Respiratory Syncytial Virus, Human - isolation & purification Respiratory Tract Infections - epidemiology Respiratory Tract Infections - virology Sequence Analysis, DNA Viral Fusion Proteins - genetics Virology Viruses |
| title | Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China |
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