Ixodes philipi (Acari: Ixodidae): Phylogenetic Status Inferred From Mitochondrial Cytochrome Oxidase Subunit I Gene Sequence Comparison
Ixodes philipi ticks were collected from the nest burrows of streaked shearwaters, Calonectris luecomelas, on 3 different islands of Japan (Awashima: 38°45′N, 139°24′E; Mikurajima: 33°52′N, 139°36′E; and Omorijima: 36°8′N, 133°10′E). The mitochondrial cytochrome oxidase subunit I (COI) gene sequence...
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description | Ixodes philipi ticks were collected from the nest burrows of streaked shearwaters, Calonectris luecomelas, on 3 different islands of Japan (Awashima: 38°45′N, 139°24′E; Mikurajima: 33°52′N, 139°36′E; and Omorijima: 36°8′N, 133°10′E). The mitochondrial cytochrome oxidase subunit I (COI) gene sequence was determined for each tick. The COI sequences of 9 other ixodid tick species also were determined, and they were used for taxonomic positioning of I. philipi. A metastriata tick, Amblyomma triguttatum, was used as an outgroup reference for the analysis. Phylogenetic examination indicated that the I. philipi ticks are on the branch with Ixodes turdus and Ixodes acutitarsus weakly, and the bootstrap value of this branching was low. Three different analyses, maximum parsimony, genetic distance, and maximum likelihood, support this conclusion. To further refine this analysis, 2,761 base pairs (bp) of sequence, which included the genes for tRNAMet, NADH dehydrogenase subunit 2 (ND2), tRNATrp, tRNACys, tRNATyr, and COI, were determined and compared for 6 I. philipi ticks from the 3 different collection sites. Although a base substitution (T to C in the ND2 gene for an Awashima tick) and 2 transitions (G to A in the COI gene for 1 Omorijima tick) have occurred, the overall sequences were highly conserved. Preserved mitochondrial sequences in the ticks from 3 widely separated locations suggest the possibility of gene flow, which was probably accomplished by migratory seabirds. |
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The mitochondrial cytochrome oxidase subunit I (COI) gene sequence was determined for each tick. The COI sequences of 9 other ixodid tick species also were determined, and they were used for taxonomic positioning of I. philipi. A metastriata tick, Amblyomma triguttatum, was used as an outgroup reference for the analysis. Phylogenetic examination indicated that the I. philipi ticks are on the branch with Ixodes turdus and Ixodes acutitarsus weakly, and the bootstrap value of this branching was low. Three different analyses, maximum parsimony, genetic distance, and maximum likelihood, support this conclusion. To further refine this analysis, 2,761 base pairs (bp) of sequence, which included the genes for tRNAMet, NADH dehydrogenase subunit 2 (ND2), tRNATrp, tRNACys, tRNATyr, and COI, were determined and compared for 6 I. philipi ticks from the 3 different collection sites. Although a base substitution (T to C in the ND2 gene for an Awashima tick) and 2 transitions (G to A in the COI gene for 1 Omorijima tick) have occurred, the overall sequences were highly conserved. Preserved mitochondrial sequences in the ticks from 3 widely separated locations suggest the possibility of gene flow, which was probably accomplished by migratory seabirds.</description><identifier>ISSN: 0022-3395</identifier><identifier>EISSN: 1937-2345</identifier><identifier>DOI: 10.1645/GE-953R.1</identifier><identifier>PMID: 17626375</identifier><identifier>CODEN: JOPAA2</identifier><language>eng</language><publisher>Lawrence, KS: American Society of Parasitologists</publisher><subject>Acari ; Amblyomma ; Animals ; Aquatic birds ; Arachnida ; Base Sequence ; Biological and medical sciences ; Biological taxonomies ; Bird Diseases - parasitology ; Birds ; Calonectris ; Calonectris leucomelas ; COI protein ; conserved sequences ; Cytochrome ; cytochrome-c oxidase ; Cytochromes ; DNA ; DNA sequencing ; DNA, Mitochondrial - chemistry ; Electron Transport Complex IV - genetics ; Female ; Females ; Fundamental and applied biological sciences. Psychology ; Gene flow ; General aspects ; General aspects and techniques. Study of several systematic groups. Models ; Genes ; Genes, Mitochondrial ; Genetic analysis ; Genetic distance ; geographical variation ; Invertebrates ; Islands ; Ixodes ; Ixodes - classification ; Ixodes - enzymology ; Ixodes - genetics ; Ixodidae ; Japan ; Laboratories ; Male ; Males ; Mitochondria ; Mitochondria - enzymology ; Mitochondrial DNA ; NADH ; NADH dehydrogenase ; ND2 gene ; nests ; Nicotinamide adenine dinucleotide ; Nucleotide sequence ; Nucleotide sequences ; Nucleotides ; Oxidase ; Parasitology ; Phylogenetics ; Phylogeny ; Polymerase chain reaction ; Polymerase Chain Reaction - veterinary ; Procellariidae ; RESEARCH NOTES ; Sea birds ; seabirds ; Sequence Alignment - veterinary ; sequence homology ; tick infestations ; Tick Infestations - parasitology ; Tick Infestations - veterinary ; Ticks ; Trees ; tRNA Tyr ; Turdus</subject><ispartof>The Journal of parasitology, 2007-06, Vol.93 (3), p.719-722</ispartof><rights>American Society of Parasitologists</rights><rights>Copyright 2007 American Society of Parasitologists</rights><rights>2007 INIST-CNRS</rights><rights>Copyright Allen Press Inc. Jun 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b450t-efac56e2ff8c9d11cce2292afecfe09d9a8d23eba2526f75555ca2f00485becb3</citedby><cites>FETCH-LOGICAL-b450t-efac56e2ff8c9d11cce2292afecfe09d9a8d23eba2526f75555ca2f00485becb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://bioone.org/doi/pdf/10.1645/GE-953R.1$$EPDF$$P50$$Gbioone$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/40058810$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>315,781,785,804,26983,27929,27930,52368,58022,58255</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18943579$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17626375$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mitani, H</creatorcontrib><creatorcontrib>Takahashi, M</creatorcontrib><creatorcontrib>Masuyama, M</creatorcontrib><creatorcontrib>Fukunaga, M</creatorcontrib><title>Ixodes philipi (Acari: Ixodidae): Phylogenetic Status Inferred From Mitochondrial Cytochrome Oxidase Subunit I Gene Sequence Comparison</title><title>The Journal of parasitology</title><addtitle>J Parasitol</addtitle><description>Ixodes philipi ticks were collected from the nest burrows of streaked shearwaters, Calonectris luecomelas, on 3 different islands of Japan (Awashima: 38°45′N, 139°24′E; Mikurajima: 33°52′N, 139°36′E; and Omorijima: 36°8′N, 133°10′E). The mitochondrial cytochrome oxidase subunit I (COI) gene sequence was determined for each tick. The COI sequences of 9 other ixodid tick species also were determined, and they were used for taxonomic positioning of I. philipi. A metastriata tick, Amblyomma triguttatum, was used as an outgroup reference for the analysis. Phylogenetic examination indicated that the I. philipi ticks are on the branch with Ixodes turdus and Ixodes acutitarsus weakly, and the bootstrap value of this branching was low. Three different analyses, maximum parsimony, genetic distance, and maximum likelihood, support this conclusion. To further refine this analysis, 2,761 base pairs (bp) of sequence, which included the genes for tRNAMet, NADH dehydrogenase subunit 2 (ND2), tRNATrp, tRNACys, tRNATyr, and COI, were determined and compared for 6 I. philipi ticks from the 3 different collection sites. Although a base substitution (T to C in the ND2 gene for an Awashima tick) and 2 transitions (G to A in the COI gene for 1 Omorijima tick) have occurred, the overall sequences were highly conserved. Preserved mitochondrial sequences in the ticks from 3 widely separated locations suggest the possibility of gene flow, which was probably accomplished by migratory seabirds.</description><subject>Acari</subject><subject>Amblyomma</subject><subject>Animals</subject><subject>Aquatic birds</subject><subject>Arachnida</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biological taxonomies</subject><subject>Bird Diseases - parasitology</subject><subject>Birds</subject><subject>Calonectris</subject><subject>Calonectris leucomelas</subject><subject>COI protein</subject><subject>conserved sequences</subject><subject>Cytochrome</subject><subject>cytochrome-c oxidase</subject><subject>Cytochromes</subject><subject>DNA</subject><subject>DNA sequencing</subject><subject>DNA, Mitochondrial - chemistry</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Female</subject><subject>Females</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene flow</subject><subject>General aspects</subject><subject>General aspects and techniques. Study of several systematic groups. Models</subject><subject>Genes</subject><subject>Genes, Mitochondrial</subject><subject>Genetic analysis</subject><subject>Genetic distance</subject><subject>geographical variation</subject><subject>Invertebrates</subject><subject>Islands</subject><subject>Ixodes</subject><subject>Ixodes - classification</subject><subject>Ixodes - enzymology</subject><subject>Ixodes - genetics</subject><subject>Ixodidae</subject><subject>Japan</subject><subject>Laboratories</subject><subject>Male</subject><subject>Males</subject><subject>Mitochondria</subject><subject>Mitochondria - enzymology</subject><subject>Mitochondrial DNA</subject><subject>NADH</subject><subject>NADH dehydrogenase</subject><subject>ND2 gene</subject><subject>nests</subject><subject>Nicotinamide adenine dinucleotide</subject><subject>Nucleotide sequence</subject><subject>Nucleotide sequences</subject><subject>Nucleotides</subject><subject>Oxidase</subject><subject>Parasitology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Polymerase chain reaction</subject><subject>Polymerase Chain Reaction - veterinary</subject><subject>Procellariidae</subject><subject>RESEARCH NOTES</subject><subject>Sea birds</subject><subject>seabirds</subject><subject>Sequence Alignment - veterinary</subject><subject>sequence homology</subject><subject>tick infestations</subject><subject>Tick Infestations - parasitology</subject><subject>Tick Infestations - veterinary</subject><subject>Ticks</subject><subject>Trees</subject><subject>tRNA Tyr</subject><subject>Turdus</subject><issn>0022-3395</issn><issn>1937-2345</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkl1rFDEUhgdR7Fq98AeoAfGjF1PzMZmP3pVluy5UKq69DpnMSTfLTDJNZqD7C_zbZpjFghcaCCHnfXjPCW-S5DXB5yTP-Jf1Kq04-3FOniQLUrEipSzjT5MFxpSmjFX8JHkRwh5jzON-npyQIqc5K_gi-bV5cA0E1O9Ma3qDPl8q6c0FmsqmkXB2gb7vDq27AwuDUWg7yGEMaGM1eA8NuvKuQ9_M4NTO2cYb2aLlYbrFOqCbh-gRAG3HerRmQBu0jj5oC_cjWAVo6bo-tgvOvkyeadkGeHU8T5Pbq9XP5df0-ma9WV5ep3XG8ZCClornQLUuVdUQohRQWlGpQWnAVVPJsqEMakk5zXXB41KSaoyzkteganaafJx9e-_iEGEQnQkK2lZacGMQBS4IzYrsvyDFGWW8IhF8_xe4d6O38RGC5pxjysusiNTZTCnvQvCgRe9NJ_1BECymEMV6JaYQxeT49ug41h00j-QxtQh8OAIyKNlqL60y4ZErq4zxoorcm5nbh8H5P3oW_0FZEhz1d7OupRPyLgYhbrcUE4ZxiQknNBKfZqI2zln4x9C_AaCQxHM</recordid><startdate>20070601</startdate><enddate>20070601</enddate><creator>Mitani, H</creator><creator>Takahashi, M</creator><creator>Masuyama, M</creator><creator>Fukunaga, M</creator><general>American Society of Parasitologists</general><general>Allen Press Inc</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7SN</scope><scope>7SS</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20070601</creationdate><title>Ixodes philipi (Acari: Ixodidae): Phylogenetic Status Inferred From Mitochondrial Cytochrome Oxidase Subunit I Gene Sequence Comparison</title><author>Mitani, H ; Takahashi, M ; Masuyama, M ; Fukunaga, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b450t-efac56e2ff8c9d11cce2292afecfe09d9a8d23eba2526f75555ca2f00485becb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Acari</topic><topic>Amblyomma</topic><topic>Animals</topic><topic>Aquatic birds</topic><topic>Arachnida</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biological taxonomies</topic><topic>Bird Diseases - parasitology</topic><topic>Birds</topic><topic>Calonectris</topic><topic>Calonectris leucomelas</topic><topic>COI protein</topic><topic>conserved sequences</topic><topic>Cytochrome</topic><topic>cytochrome-c oxidase</topic><topic>Cytochromes</topic><topic>DNA</topic><topic>DNA sequencing</topic><topic>DNA, Mitochondrial - chemistry</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Female</topic><topic>Females</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene flow</topic><topic>General aspects</topic><topic>General aspects and techniques. Study of several systematic groups. Models</topic><topic>Genes</topic><topic>Genes, Mitochondrial</topic><topic>Genetic analysis</topic><topic>Genetic distance</topic><topic>geographical variation</topic><topic>Invertebrates</topic><topic>Islands</topic><topic>Ixodes</topic><topic>Ixodes - classification</topic><topic>Ixodes - enzymology</topic><topic>Ixodes - genetics</topic><topic>Ixodidae</topic><topic>Japan</topic><topic>Laboratories</topic><topic>Male</topic><topic>Males</topic><topic>Mitochondria</topic><topic>Mitochondria - enzymology</topic><topic>Mitochondrial DNA</topic><topic>NADH</topic><topic>NADH dehydrogenase</topic><topic>ND2 gene</topic><topic>nests</topic><topic>Nicotinamide adenine dinucleotide</topic><topic>Nucleotide sequence</topic><topic>Nucleotide sequences</topic><topic>Nucleotides</topic><topic>Oxidase</topic><topic>Parasitology</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Polymerase chain reaction</topic><topic>Polymerase Chain Reaction - veterinary</topic><topic>Procellariidae</topic><topic>RESEARCH NOTES</topic><topic>Sea birds</topic><topic>seabirds</topic><topic>Sequence Alignment - veterinary</topic><topic>sequence homology</topic><topic>tick infestations</topic><topic>Tick Infestations - parasitology</topic><topic>Tick Infestations - veterinary</topic><topic>Ticks</topic><topic>Trees</topic><topic>tRNA Tyr</topic><topic>Turdus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mitani, H</creatorcontrib><creatorcontrib>Takahashi, M</creatorcontrib><creatorcontrib>Masuyama, M</creatorcontrib><creatorcontrib>Fukunaga, M</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of parasitology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mitani, H</au><au>Takahashi, M</au><au>Masuyama, M</au><au>Fukunaga, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Ixodes philipi (Acari: Ixodidae): Phylogenetic Status Inferred From Mitochondrial Cytochrome Oxidase Subunit I Gene Sequence Comparison</atitle><jtitle>The Journal of parasitology</jtitle><addtitle>J Parasitol</addtitle><date>2007-06-01</date><risdate>2007</risdate><volume>93</volume><issue>3</issue><spage>719</spage><epage>722</epage><pages>719-722</pages><issn>0022-3395</issn><eissn>1937-2345</eissn><coden>JOPAA2</coden><abstract>Ixodes philipi ticks were collected from the nest burrows of streaked shearwaters, Calonectris luecomelas, on 3 different islands of Japan (Awashima: 38°45′N, 139°24′E; Mikurajima: 33°52′N, 139°36′E; and Omorijima: 36°8′N, 133°10′E). The mitochondrial cytochrome oxidase subunit I (COI) gene sequence was determined for each tick. The COI sequences of 9 other ixodid tick species also were determined, and they were used for taxonomic positioning of I. philipi. A metastriata tick, Amblyomma triguttatum, was used as an outgroup reference for the analysis. Phylogenetic examination indicated that the I. philipi ticks are on the branch with Ixodes turdus and Ixodes acutitarsus weakly, and the bootstrap value of this branching was low. Three different analyses, maximum parsimony, genetic distance, and maximum likelihood, support this conclusion. To further refine this analysis, 2,761 base pairs (bp) of sequence, which included the genes for tRNAMet, NADH dehydrogenase subunit 2 (ND2), tRNATrp, tRNACys, tRNATyr, and COI, were determined and compared for 6 I. philipi ticks from the 3 different collection sites. Although a base substitution (T to C in the ND2 gene for an Awashima tick) and 2 transitions (G to A in the COI gene for 1 Omorijima tick) have occurred, the overall sequences were highly conserved. Preserved mitochondrial sequences in the ticks from 3 widely separated locations suggest the possibility of gene flow, which was probably accomplished by migratory seabirds.</abstract><cop>Lawrence, KS</cop><pub>American Society of Parasitologists</pub><pmid>17626375</pmid><doi>10.1645/GE-953R.1</doi><tpages>4</tpages></addata></record> |
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subjects | Acari Amblyomma Animals Aquatic birds Arachnida Base Sequence Biological and medical sciences Biological taxonomies Bird Diseases - parasitology Birds Calonectris Calonectris leucomelas COI protein conserved sequences Cytochrome cytochrome-c oxidase Cytochromes DNA DNA sequencing DNA, Mitochondrial - chemistry Electron Transport Complex IV - genetics Female Females Fundamental and applied biological sciences. Psychology Gene flow General aspects General aspects and techniques. Study of several systematic groups. Models Genes Genes, Mitochondrial Genetic analysis Genetic distance geographical variation Invertebrates Islands Ixodes Ixodes - classification Ixodes - enzymology Ixodes - genetics Ixodidae Japan Laboratories Male Males Mitochondria Mitochondria - enzymology Mitochondrial DNA NADH NADH dehydrogenase ND2 gene nests Nicotinamide adenine dinucleotide Nucleotide sequence Nucleotide sequences Nucleotides Oxidase Parasitology Phylogenetics Phylogeny Polymerase chain reaction Polymerase Chain Reaction - veterinary Procellariidae RESEARCH NOTES Sea birds seabirds Sequence Alignment - veterinary sequence homology tick infestations Tick Infestations - parasitology Tick Infestations - veterinary Ticks Trees tRNA Tyr Turdus |
title | Ixodes philipi (Acari: Ixodidae): Phylogenetic Status Inferred From Mitochondrial Cytochrome Oxidase Subunit I Gene Sequence Comparison |
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